Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CARGAARA | 8 | CAAGAAGA |
RGACAAGA | 8 | GGACAAGA |
ATKAGG | 6 | ATGAGG |
AGRGTGAG | 8 | AGGGTGAG |
THAATAAA | 8 | TCAATAAA |
CAVTTGTC | 8 | CAGTTGTC |
ATYCTTC | 7 | ATTCTTC |
CNTGGGAC | 8 | CTTGGGAC |
RGGCAGA | 7 | AGGCAGA |
ACTCRGGA | 8 | ACTCAGGA |
ARGGTGRA | 8 | AGGGTGGA |
CACDGACA | 8 | CACAGACA |
ATGCWGAC | 8 | ATGCTGAC |
GAACAGC | 7 | GAACAGC |
CTCAGTAA | 8 | CTCAGTAA |
GCTCCTY | 7 | GCTCCTC |
CCACCRAA | 8 | CCACCAAA |
TCAGCTAR | 8 | TCAGCTAG |
GACRC | 5 | GACAC |
ATGYG | 5 | ATGTG |
CATGTM | 6 | CATGTC |
GGTACM | 6 | GGTACA |
CRTGAGAC | 8 | CATGAGAC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.252 C 0.248 G 0.248 T 0.252
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
CACDGACA | DREME-12 | chr16 | - | 4243805 | 4243812 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr1 | - | 8939420 | 8939427 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr1 | - | 10974610 | 10974617 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr10 | - | 11730465 | 11730472 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr21 | - | 29295633 | 29295640 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr21 | - | 29461273 | 29461280 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr15 | - | 34187387 | 34187394 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr8 | - | 37559808 | 37559815 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr12 | - | 38879370 | 38879377 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr12 | - | 41856649 | 41856656 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr10 | - | 42772414 | 42772421 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr22 | - | 42775372 | 42775379 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr14 | - | 45039024 | 45039031 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr19 | - | 46822470 | 46822477 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr13 | - | 48551548 | 48551555 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr8 | - | 52599304 | 52599311 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr2 | - | 55438880 | 55438887 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr12 | - | 58655806 | 58655813 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr2 | - | 72428138 | 72428145 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr15 | - | 73892161 | 73892168 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr18 | - | 75483852 | 75483859 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr3 | - | 105759220 | 105759227 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr7 | - | 106051453 | 106051460 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr6 | - | 110138717 | 110138724 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr12 | - | 112161968 | 112161975 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr8 | - | 123754905 | 123754912 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr6 | - | 125453753 | 125453760 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr7 | - | 127608801 | 127608808 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr2 | - | 165075193 | 165075200 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr1 | - | 201156972 | 201156979 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr1 | - | 217969178 | 217969185 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr1 | - | 222894062 | 222894069 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr2 | - | 241639745 | 241639752 | 1.53e-05 | 0.131 | CACAGACA |
CACDGACA | DREME-12 | chr4 | + | 2981345 | 2981352 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr8 | + | 17748600 | 17748607 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr12 | + | 24803095 | 24803102 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr11 | + | 27305398 | 27305405 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr13 | + | 31270871 | 31270878 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr12 | + | 31832688 | 31832695 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr10 | + | 32122230 | 32122237 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr3 | + | 32917450 | 32917457 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr19 | + | 32937063 | 32937070 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr5 | + | 33041054 | 33041061 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr3 | + | 33467439 | 33467446 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr20 | + | 41006735 | 41006742 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr21 | + | 46108900 | 46108907 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr6 | + | 54393322 | 54393329 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr12 | + | 64032100 | 64032107 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr11 | + | 76250983 | 76250990 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr10 | + | 89020326 | 89020333 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr6 | + | 89073227 | 89073234 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr14 | + | 94818729 | 94818736 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr10 | + | 95706335 | 95706342 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr13 | + | 100403674 | 100403681 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chrX | + | 105050690 | 105050697 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr7 | + | 107360174 | 107360181 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr11 | + | 115329654 | 115329661 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr11 | + | 115329735 | 115329742 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr10 | + | 121855042 | 121855049 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr7 | + | 151958792 | 151958799 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr4 | + | 152540119 | 152540126 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr7 | + | 159310654 | 159310661 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr5 | + | 159344380 | 159344387 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr1 | + | 167583695 | 167583702 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr1 | + | 169439627 | 169439634 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr5 | + | 180934930 | 180934937 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr2 | + | 186738316 | 186738323 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr1 | + | 204279870 | 204279877 | 1.53e-05 | 0.131 | cacagaca |
CACDGACA | DREME-12 | chr12 | - | 8956105 | 8956112 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr16 | - | 11600949 | 11600956 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr12 | - | 12108003 | 12108010 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr8 | - | 20343532 | 20343539 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr11 | - | 32704942 | 32704949 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr7 | - | 32948494 | 32948501 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr13 | - | 33136787 | 33136794 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr8 | - | 33659478 | 33659485 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr15 | - | 36222174 | 36222181 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr1 | - | 41762288 | 41762295 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chrX | - | 47698392 | 47698399 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr8 | - | 48081136 | 48081143 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr4 | - | 52886409 | 52886416 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr6 | - | 54667854 | 54667861 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr8 | - | 98670863 | 98670870 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr8 | - | 100670737 | 100670744 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr10 | - | 118608937 | 118608944 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr3 | - | 141657453 | 141657460 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr2 | - | 238416132 | 238416139 | 3.05e-05 | 0.164 | CACTGACA |
CACDGACA | DREME-12 | chr4 | + | 1286446 | 1286453 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr18 | + | 8837221 | 8837228 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr6 | + | 9553200 | 9553207 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr12 | + | 12107948 | 12107955 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr2 | + | 17629778 | 17629785 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr6 | + | 20790688 | 20790695 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr1 | + | 29861121 | 29861128 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr10 | + | 44666981 | 44666988 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr15 | + | 45029459 | 45029466 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr12 | + | 45770552 | 45770559 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr18 | + | 57889236 | 57889243 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr1 | + | 67817053 | 67817060 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr15 | + | 67869830 | 67869837 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr11 | + | 87042032 | 87042039 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr16 | + | 89149597 | 89149604 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr7 | + | 97139195 | 97139202 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr5 | + | 108967226 | 108967233 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr7 | + | 131854675 | 131854682 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr4 | + | 142336135 | 142336142 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr2 | + | 238416018 | 238416025 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr2 | + | 241639574 | 241639581 | 3.05e-05 | 0.164 | cactgaca |
CACDGACA | DREME-12 | chr6 | - | 20723162 | 20723169 | 4.55e-05 | 0.219 | CACGGACA |
CACDGACA | DREME-12 | chr22 | - | 33619119 | 33619126 | 4.55e-05 | 0.219 | CACGGACA |
CACDGACA | DREME-12 | chr18 | - | 51014694 | 51014701 | 4.55e-05 | 0.219 | CACGGACA |
CACDGACA | DREME-12 | chr1 | - | 61874006 | 61874013 | 4.55e-05 | 0.219 | CACGGACA |
CACDGACA | DREME-12 | chr6 | - | 136571265 | 136571272 | 4.55e-05 | 0.219 | CACGGACA |
CACDGACA | DREME-12 | chr7 | + | 17101460 | 17101467 | 4.55e-05 | 0.219 | cacggaca |
CACDGACA | DREME-12 | chr18 | + | 21863236 | 21863243 | 4.55e-05 | 0.219 | cacggaca |
CACDGACA | DREME-12 | chr16 | + | 68187455 | 68187462 | 4.55e-05 | 0.219 | cacggaca |
CACDGACA | DREME-12 | chr5 | + | 81291923 | 81291930 | 4.55e-05 | 0.219 | cacggaca |
CACDGACA | DREME-12 | chr9 | + | 85744511 | 85744518 | 4.55e-05 | 0.219 | cacggaca |
CACDGACA | DREME-12 | chr14 | + | 95676782 | 95676789 | 4.55e-05 | 0.219 | cacggaca |
CACDGACA | DREME-12 | chr1 | + | 98650507 | 98650514 | 4.55e-05 | 0.219 | cacggaca |
CACDGACA | DREME-12 | chr3 | + | 196506862 | 196506869 | 4.55e-05 | 0.219 | cacggaca |
CACDGACA | DREME-12 | chr5 | - | 141681756 | 141681763 | 6.05e-05 | 0.289 | CACCGACA |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_16 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif CACDGACA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_16 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.