# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:08:39 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF680.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:08:39 PDT 2018) # host: surya # when: Thu May 10 18:41:29 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.266 C 0.233 G 0.230 T 0.271 MOTIF CARGAARA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CARGAARA TYTTCYTG 447 21 1.3e-162 3.2e-158 # CAAGAAGA TCTTCTTG 256 7 3.7e-081 9.1e-077 # CAGGAAGA TCTTCCTG 142 9 7.5e-036 1.8e-031 # CAAGAAAA TTTTCTTG 39 2 2.2e-010 5.4e-006 # CAGGAAAA TTTTCCTG 18 3 6.8e-004 1.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 470 E= 3.2e-158 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.655319 0.000000 0.344681 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.121277 0.000000 0.878723 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RGACAAGA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RGACAAGA TCTTGTCY 314 11 9.1e-102 2.2e-097 # GGACAAGA TCTTGTCC 257 6 5.8e-083 1.4e-078 # AGACAAGA TCTTGTCT 57 5 4.8e-013 1.2e-008 letter-probability matrix: alength= 4 w= 8 nsites= 314 E= 2.2e-097 0.181529 0.000000 0.818471 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATKAGG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ATKAGG CCTMAT 347 65 2.9e-070 7.0e-066 # ATGAGG CCTCAT 296 49 3.8e-060 9.0e-056 # ATTAGG CCTAAT 53 16 2.5e-006 6.0e-002 letter-probability matrix: alength= 4 w= 6 nsites= 371 E= 7.0e-066 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.851752 0.148248 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGRGTGAG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AGRGTGAG CTCACYCT 211 12 2.8e-057 6.6e-053 # AGGGTGAG CTCACCCT 136 3 1.6e-040 3.8e-036 # AGAGTGAG CTCACTCT 75 9 3.1e-015 7.4e-011 letter-probability matrix: alength= 4 w= 8 nsites= 211 E= 6.6e-053 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.355450 0.000000 0.644550 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF THAATAAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST THAATAAA TTTATTDA 159 2 3.3e-050 7.6e-046 # TCAATAAA TTTATTGA 119 1 1.5e-037 3.5e-033 # TTAATAAA TTTATTAA 29 0 1.3e-009 3.1e-005 # TAAATAAA TTTATTTA 11 1 3.1e-003 7.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 169 E= 7.6e-046 0.000000 0.000000 0.000000 1.000000 0.124260 0.704142 0.000000 0.171598 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAVTTGTC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAVTTGTC GACAABTG 125 8 3.3e-031 7.6e-027 # CAGTTGTC GACAACTG 59 4 1.9e-014 4.3e-010 # CACTTGTC GACAAGTG 43 3 1.2e-010 2.7e-006 # CAATTGTC GACAATTG 24 1 6.2e-007 1.5e-002 letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 7.6e-027 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.190476 0.341270 0.468254 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATYCTTC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATYCTTC GAAGRAT 127 17 9.0e-025 2.1e-020 # ATTCTTC GAAGAAT 101 9 8.3e-023 1.9e-018 # ATCCTTC GAAGGAT 29 8 3.1e-004 7.2e+000 letter-probability matrix: alength= 4 w= 7 nsites= 136 E= 2.1e-020 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.227941 0.000000 0.772059 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CNTGGGAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CNTGGGAC GTCCCANG 89 8 5.3e-020 1.2e-015 # CTTGGGAC GTCCCAAG 37 2 8.5e-010 2.0e-005 # CATGGGAC GTCCCATG 27 3 3.3e-006 7.6e-002 # CCTGGGAC GTCCCAGG 18 3 6.8e-004 1.6e+001 # CGTGGGAC GTCCCACG 8 0 3.8e-003 8.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 1.2e-015 0.000000 1.000000 0.000000 0.000000 0.300000 0.200000 0.088889 0.411111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RGGCAGA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST RGGCAGA TCTGCCY 124 26 8.7e-019 2.0e-014 # AGGCAGA TCTGCCT 82 14 4.5e-014 1.0e-009 # GGGCAGA TCTGCCC 43 12 1.1e-005 2.5e-001 letter-probability matrix: alength= 4 w= 7 nsites= 125 E= 2.0e-014 0.656000 0.000000 0.344000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACTCRGGA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACTCRGGA TCCYGAGT 68 4 3.9e-017 8.7e-013 # ACTCAGGA TCCTGAGT 45 1 2.9e-013 6.6e-009 # ACTCGGGA TCCCGAGT 23 3 3.7e-005 8.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 8.7e-013 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.661765 0.000000 0.338235 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ARGGTGRA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ARGGTGRA TYCACCYT 83 10 8.5e-017 1.9e-012 # AGGGTGGA TCCACCCT 23 1 1.2e-006 2.8e-002 # AAGGTGGA TCCACCTT 22 3 6.8e-005 1.5e+000 # AAGGTGAA TTCACCTT 19 2 9.8e-005 2.2e+000 # AGGGTGAA TTCACCCT 20 4 7.0e-004 1.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 1.9e-012 1.000000 0.000000 0.000000 0.000000 0.488095 0.000000 0.511905 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.464286 0.000000 0.535714 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACDGACA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CACDGACA TGTCHGTG 54 4 5.4e-013 1.2e-008 # CACAGACA TGTCTGTG 24 2 4.3e-006 9.7e-002 # CACTGACA TGTCAGTG 21 2 2.9e-005 6.4e-001 # CACGGACA TGTCCGTG 9 0 1.9e-003 4.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.2e-008 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.000000 0.166667 0.388889 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGCWGAC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ATGCWGAC GTCWGCAT 39 0 9.6e-013 2.1e-008 # ATGCTGAC GTCAGCAT 22 0 2.0e-007 4.4e-003 # ATGCAGAC GTCTGCAT 17 0 6.8e-006 1.5e-001 letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 2.1e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.435897 0.000000 0.000000 0.564103 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAACAGC DREME-14 # Word RC Word Pos Neg P-value E-value # BEST GAACAGC GCTGTTC 50 5 4.5e-011 1.0e-006 # GAACAGC GCTGTTC 50 5 4.5e-011 1.0e-006 letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 1.0e-006 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTCAGTAA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CTCAGTAA TTACTGAG 33 0 7.4e-011 1.6e-006 # CTCAGTAA TTACTGAG 33 0 7.4e-011 1.6e-006 letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.6e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCTCCTY DREME-16 # Word RC Word Pos Neg P-value E-value # BEST GCTCCTY RAGGAGC 86 24 1.9e-010 4.3e-006 # GCTCCTC GAGGAGC 56 11 4.4e-009 9.8e-005 # GCTCCTT AAGGAGC 31 13 4.2e-003 9.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 88 E= 4.3e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.636364 0.000000 0.363636 MOTIF CCACCRAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CCACCRAA TTYGGTGG 35 1 3.3e-010 7.3e-006 # CCACCAAA TTTGGTGG 28 1 4.1e-008 9.1e-004 # CCACCGAA TTCGGTGG 7 0 7.7e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 7.3e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCAGCTAR DREME-18 # Word RC Word Pos Neg P-value E-value # BEST TCAGCTAR YTAGCTGA 36 4 6.0e-008 1.3e-003 # TCAGCTAG CTAGCTGA 20 1 9.1e-006 2.0e-001 # TCAGCTAA TTAGCTGA 16 3 2.1e-003 4.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.3e-003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.444444 0.000000 0.555556 0.000000 MOTIF GACRC DREME-19 # Word RC Word Pos Neg P-value E-value # BEST GACRC GYGTC 186 108 1.0e-007 2.3e-003 # GACAC GTGTC 153 98 6.1e-005 1.3e+000 # GACGC GCGTC 35 14 1.6e-003 3.4e+001 letter-probability matrix: alength= 4 w= 5 nsites= 200 E= 2.3e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.825000 0.000000 0.175000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATGYG DREME-20 # Word RC Word Pos Neg P-value E-value # BEST ATGYG CRCAT 174 101 3.4e-007 7.2e-003 # ATGCG CGCAT 33 7 1.6e-005 3.4e-001 # ATGTG CACAT 146 96 2.0e-004 4.3e+000 letter-probability matrix: alength= 4 w= 5 nsites= 193 E= 7.2e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.170984 0.000000 0.829016 0.000000 0.000000 1.000000 0.000000 MOTIF CATGTM DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CATGTM KACATG 82 31 2.6e-007 5.4e-003 # CATGTC GACATG 54 21 5.4e-005 1.1e+000 # CATGTA TACATG 38 13 2.4e-004 4.9e+000 letter-probability matrix: alength= 4 w= 6 nsites= 93 E= 5.4e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.408602 0.591398 0.000000 0.000000 MOTIF GGTACM DREME-22 # Word RC Word Pos Neg P-value E-value # BEST GGTACM KGTACC 45 10 6.1e-007 1.2e-002 # GGTACA TGTACC 30 8 1.9e-004 4.0e+000 # GGTACC GGTACC 15 2 1.1e-003 2.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 45 E= 1.2e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 MOTIF CRTGAGAC DREME-23 # Word RC Word Pos Neg P-value E-value # BEST CRTGAGAC GTCTCAYG 19 0 1.7e-006 3.4e-002 # CATGAGAC GTCTCATG 12 0 2.3e-004 4.7e+000 # CGTGAGAC GTCTCACG 7 0 7.7e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 3.4e-002 0.000000 1.000000 0.000000 0.000000 0.631579 0.000000 0.368421 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 78.25 seconds