# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF667.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF667.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF667.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF667.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:07:55 PDT 2018) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF667.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:07:55 PDT 2018) # host: wotan # when: Thu May 10 19:43:59 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.246 C 0.248 G 0.254 T 0.252 MOTIF AAGADCAG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AAGADCAG CTGHTCTT 166 9 4.6e-044 1.5e-039 # AAGAACAG CTGTTCTT 133 3 1.8e-039 5.7e-035 # AAGATCAG CTGATCTT 21 3 1.2e-004 3.9e+000 # AAGAGCAG CTGCTCTT 14 3 6.1e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 168 E= 1.5e-039 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.791667 0.000000 0.083333 0.125000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GRAAAM DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GRAAAM KTTTYC 260 144 8.1e-013 2.6e-008 # GAAAAC GTTTTC 115 39 2.1e-011 6.9e-007 # GGAAAA TTTTCC 86 43 4.0e-005 1.3e+000 # GGAAAC GTTTCC 56 28 1.0e-003 3.3e+001 # GAAAAA TTTTTC 99 70 1.0e-002 3.2e+002 letter-probability matrix: alength= 4 w= 6 nsites= 309 E= 2.6e-008 0.000000 0.000000 1.000000 0.000000 0.611650 0.000000 0.388350 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.485437 0.514563 0.000000 0.000000 MOTIF AGDTTCAG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AGDTTCAG CTGAAHCT 48 4 2.9e-011 9.0e-007 # AGATTCAG CTGAATCT 25 2 2.3e-006 7.1e-002 # AGGTTCAG CTGAACCT 12 1 1.6e-003 5.1e+001 # AGTTTCAG CTGAAACT 11 1 3.1e-003 9.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 9.0e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.520833 0.000000 0.250000 0.229167 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TTGGCAB DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TTGGCAB VTGCCAA 86 22 3.1e-011 9.7e-007 # TTGGCAC GTGCCAA 36 7 3.1e-006 9.8e-002 # TTGGCAG CTGCCAA 28 6 8.0e-005 2.5e+000 # TTGGCAT ATGCCAA 24 9 6.1e-003 1.9e+002 letter-probability matrix: alength= 4 w= 7 nsites= 95 E= 9.7e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.431579 0.305263 0.263158 MOTIF AATAAAY DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AATAAAY RTTTATT 46 8 3.7e-008 1.2e-003 # AATAAAC GTTTATT 23 4 1.3e-004 4.2e+000 # AATAAAT ATTTATT 24 5 2.4e-004 7.3e+000 letter-probability matrix: alength= 4 w= 7 nsites= 47 E= 1.2e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.489362 0.000000 0.510638 MOTIF CTATTCY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CTATTCY RGAATAG 36 4 6.0e-008 1.9e-003 # CTATTCC GGAATAG 18 0 3.4e-006 1.0e-001 # CTATTCT AGAATAG 19 4 1.2e-003 3.7e+001 letter-probability matrix: alength= 4 w= 7 nsites= 36 E= 1.9e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.472222 0.000000 0.527778 # Stopping reason: E-value threshold exceeded # Running time: 149.11 seconds