# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF664.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF664.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF664.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF664.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:40:04 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF664.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:40:04 PST 2017) # host: surya # when: Mon Dec 18 16:54:11 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.296 C 0.202 G 0.201 T 0.300 MOTIF CTCADTWA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CTCADTWA TWAHTGAG 311 21 4.7e-089 1.4e-084 # CTCATTTA TAAATGAG 151 3 7.9e-046 2.4e-041 # CTCAATAA TTATTGAG 92 7 9.8e-022 3.0e-017 # CTCAGTAA TTACTGAG 31 1 5.3e-009 1.6e-004 # CTCATTAA TTAATGAG 19 3 3.9e-004 1.2e+001 # CTCAATTA TAATTGAG 15 3 3.6e-003 1.1e+002 # CTCAGTTA TAACTGAG 16 4 5.6e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 336 E= 1.4e-084 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.318452 0.000000 0.139881 0.541667 0.000000 0.000000 0.000000 1.000000 0.425595 0.000000 0.000000 0.574405 1.000000 0.000000 0.000000 0.000000 MOTIF RTAGTA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RTAGTA TACTAY 213 64 2.1e-025 6.2e-021 # ATAGTA TACTAT 154 35 2.4e-022 7.3e-018 # GTAGTA TACTAC 75 35 4.1e-005 1.2e+000 letter-probability matrix: alength= 4 w= 6 nsites= 236 E= 6.2e-021 0.669492 0.000000 0.330508 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTGCCD DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GTGCCD HGGCAC 151 40 2.6e-019 7.6e-015 # GTGCCT AGGCAC 83 20 2.2e-011 6.5e-007 # GTGCCA TGGCAC 69 19 1.3e-008 3.8e-004 # GTGCCG CGGCAC 15 3 3.6e-003 1.1e+002 letter-probability matrix: alength= 4 w= 6 nsites= 164 E= 7.6e-015 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.414634 0.000000 0.091463 0.493902 MOTIF BTATCTCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST BTATCTCA TGAGATAV 43 3 1.2e-010 3.4e-006 # GTATCTCA TGAGATAC 14 0 5.7e-005 1.7e+000 # CTATCTCA TGAGATAG 16 1 1.3e-004 3.7e+000 # TTATCTCA TGAGATAA 15 2 1.1e-003 3.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 3.4e-006 0.000000 0.369565 0.304348 0.326087 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGTGYTCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GGTGYTCA TGARCACC 33 2 1.2e-008 3.6e-004 # GGTGCTCA TGAGCACC 23 2 8.1e-006 2.4e-001 # GGTGTTCA TGAACACC 10 0 9.4e-004 2.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 3.6e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.676471 0.000000 0.323529 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAATGRG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AAAATGRG CYCATTTT 43 8 2.0e-007 5.9e-003 # AAAATGGG CCCATTTT 24 3 2.1e-005 6.0e-001 # AAAATGAG CTCATTTT 19 5 3.0e-003 8.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 5.9e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TCAACWAA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST TCAACWAA TTWGTTGA 34 4 2.1e-007 6.0e-003 # TCAACAAA TTTGTTGA 18 2 1.8e-004 5.3e+000 # TCAACTAA TTAGTTGA 16 2 6.1e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 6.0e-003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.529412 0.000000 0.000000 0.470588 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTCMC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CCTCMC GKGAGG 84 34 7.4e-007 2.2e-002 # CCTCAC GTGAGG 53 19 2.3e-005 6.6e-001 # CCTCCC GGGAGG 38 16 1.6e-003 4.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 99 E= 2.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.565657 0.434343 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGCACTTW DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AGCACTTW WAAGTGCT 34 5 8.5e-007 2.5e-002 # AGCACTTT AAAGTGCT 16 2 6.1e-004 1.7e+001 # AGCACTTA TAAGTGCT 18 3 6.8e-004 2.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 2.5e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.529412 0.000000 0.000000 0.470588 MOTIF TCATTYA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST TCATTYA TRAATGA 70 26 1.7e-006 4.8e-002 # TCATTCA TGAATGA 43 14 5.3e-005 1.5e+000 # TCATTTA TAAATGA 28 12 7.4e-003 2.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 75 E= 4.8e-002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.586667 0.000000 0.413333 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 39.69 seconds