# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:40:05 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:40:05 PST 2017) # host: indra # when: Mon Dec 18 16:51:10 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.384 C 0.122 G 0.120 T 0.374 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 576 116 6.2e-185 1.4e-180 # TAAATAAA TTTATTTA 576 116 6.2e-185 1.4e-180 letter-probability matrix: alength= 4 w= 8 nsites= 2927 E= 1.4e-180 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWC GWCTC 420 42 8.6e-124 1.8e-119 # GAGAC GTCTC 358 27 3.6e-105 7.6e-101 # GAGTC GACTC 258 18 1.6e-069 3.4e-065 letter-probability matrix: alength= 4 w= 5 nsites= 638 E= 1.8e-119 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.681818 0.000000 0.000000 0.318182 0.000000 1.000000 0.000000 0.000000 MOTIF ACAGRGY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ACAGRGY RCYCTGT 200 1 1.5e-067 3.0e-063 # ACAGAGC GCTCTGT 120 0 1.0e-039 2.0e-035 # ACAGAGT ACTCTGT 68 1 1.7e-020 3.3e-016 # ACAGGGC GCCCTGT 7 0 7.7e-003 1.5e+002 # ACAGGGT ACCCTGT 7 0 7.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 203 E= 3.0e-063 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.931034 0.000000 0.068966 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.630542 0.000000 0.369458 MOTIF CWTCTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CWTCTC GAGAWG 143 14 7.5e-032 1.5e-027 # CATCTC GAGATG 127 11 3.3e-029 6.5e-025 # CTTCTC GAGAAG 18 3 6.8e-004 1.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 148 E= 1.5e-027 0.000000 1.000000 0.000000 0.000000 0.871622 0.000000 0.000000 0.128378 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGKS DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTGKS SMCAG 262 86 4.8e-030 9.2e-026 # CTGGG CCCAG 131 29 3.8e-019 7.2e-015 # CTGGC GCCAG 69 23 3.2e-007 6.2e-003 # CTGTC GACAG 57 18 1.9e-006 3.5e-002 # CTGTG CACAG 62 23 7.0e-006 1.3e-001 letter-probability matrix: alength= 4 w= 5 nsites= 332 E= 9.2e-026 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.629518 0.370482 0.000000 0.394578 0.605422 0.000000 MOTIF CAAGAS DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAAGAS STCTTG 64 7 1.5e-013 2.7e-009 # CAAGAG CTCTTG 46 6 2.6e-009 4.5e-005 # CAAGAC GTCTTG 18 1 3.4e-005 5.9e-001 letter-probability matrix: alength= 4 w= 6 nsites= 65 E= 2.7e-009 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.276923 0.723077 0.000000 MOTIF CTCWS DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTCWS SWGAG 152 66 6.3e-011 1.1e-006 # CTCAC GTGAG 45 12 4.1e-006 7.1e-002 # CTCTG CAGAG 51 18 2.7e-005 4.7e-001 # CTCAG CTGAG 38 16 1.6e-003 2.7e+001 # CTCTC GAGAG 53 29 4.1e-003 7.0e+001 letter-probability matrix: alength= 4 w= 5 nsites= 183 E= 1.1e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.448087 0.000000 0.000000 0.551913 0.000000 0.530055 0.469945 0.000000 MOTIF CCWSC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CCWSC GSWGG 141 67 9.8e-009 1.6e-004 # CCACC GGTGG 53 23 2.6e-004 4.1e+000 # CCTCC GGAGG 41 17 8.7e-004 1.4e+001 # CCAGC GCTGG 37 16 2.3e-003 3.6e+001 # CCTGC GCAGG 37 18 6.2e-003 9.9e+001 letter-probability matrix: alength= 4 w= 5 nsites= 165 E= 1.6e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.515152 0.000000 0.000000 0.484848 0.000000 0.581818 0.418182 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAAACTC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GAAACTC GAGTTTC 40 5 2.3e-008 3.5e-004 # GAAACTC GAGTTTC 40 5 2.3e-008 3.5e-004 letter-probability matrix: alength= 4 w= 7 nsites= 41 E= 3.5e-004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 32.27 seconds