# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:05:25 PDT 2018) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:05:25 PDT 2018) # host: wotan # when: Thu May 10 19:44:34 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.241 C 0.256 G 0.261 T 0.243 MOTIF DTAAATA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST DTAAATA TATTTAH 144 13 5.6e-033 1.8e-028 # ATAAATA TATTTAT 56 3 1.8e-014 5.9e-010 # TTAAATA TATTTAA 57 7 1.3e-011 4.3e-007 # GTAAATA TATTTAC 34 3 4.1e-008 1.4e-003 letter-probability matrix: alength= 4 w= 7 nsites= 148 E= 1.8e-028 0.385135 0.000000 0.229730 0.385135 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GDAAAC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GDAAAC GTTTHC 143 55 3.4e-012 1.1e-007 # GGAAAC GTTTCC 71 28 3.9e-006 1.3e-001 # GTAAAC GTTTAC 29 5 1.5e-005 5.0e-001 # GAAAAC GTTTTC 48 24 2.4e-003 8.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 152 E= 1.1e-007 0.000000 0.000000 1.000000 0.000000 0.328947 0.000000 0.480263 0.190789 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RTGASTCA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST RTGASTCA TGASTCAY 59 8 1.6e-011 5.3e-007 # ATGACTCA TGAGTCAT 29 3 9.7e-007 3.1e-002 # GTGAGTCA TGACTCAC 22 2 1.5e-005 4.9e-001 # ATGAGTCA TGACTCAT 18 2 1.8e-004 5.9e+000 # GTGACTCA TGAGTCAC 16 3 2.1e-003 6.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 5.3e-007 0.557377 0.000000 0.442623 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.524590 0.475410 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGTMATCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GGTMATCA TGATKACC 42 2 2.9e-011 9.2e-007 # GGTCATCA TGATGACC 27 1 8.2e-008 2.6e-003 # GGTAATCA TGATTACC 15 1 2.4e-004 7.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 9.2e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.357143 0.642857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ASTTCCG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ASTTCCG CGGAAST 31 2 4.6e-008 1.5e-003 # ACTTCCG CGGAAGT 22 0 2.0e-007 6.3e-003 # AGTTCCG CGGAACT 12 2 6.2e-003 2.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 35 E= 1.5e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.657143 0.342857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGRAAK DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GGRAAK MTTYCC 204 119 2.0e-008 6.4e-004 # GGGAAG CTTCCC 78 46 1.6e-003 5.1e+001 # GGAAAT ATTTCC 51 26 2.2e-003 7.1e+001 # GGGAAT ATTCCC 42 20 2.9e-003 9.2e+001 # GGAAAG CTTTCC 68 42 6.0e-003 1.9e+002 letter-probability matrix: alength= 4 w= 6 nsites= 249 E= 6.4e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.502008 0.000000 0.497992 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.614458 0.385542 MOTIF GATTGCCM DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GATTGCCM KGGCAATC 24 0 4.7e-008 1.5e-003 # GATTGCCC GGGCAATC 13 0 1.1e-004 3.6e+000 # GATTGCCA TGGCAATC 11 0 4.7e-004 1.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.5e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.458333 0.541667 0.000000 0.000000 MOTIF CAGMG DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CAGMG CKCTG 293 202 6.1e-008 1.9e-003 # CAGAG CTCTG 208 137 3.8e-006 1.2e-001 # CAGCG CGCTG 123 77 2.3e-004 7.4e+000 letter-probability matrix: alength= 4 w= 5 nsites= 400 E= 1.9e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.375000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 169.28 seconds