******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:44772760-44773260 1.0000 100 chr4:17262057-17262557 1.0000 100 chr6:28838789-28839289 1.0000 100 chr6:31703080-31703580 1.0000 100 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chr17:19187859-19188359 1.0000 100 chr5:41747193-41747693 1.0000 100 chr17:1080693-1081193 1.0000 100 chr3:168883091-168883591 1.0000 100 chr1:234977852-234978352 1.0000 100 chr6:6467240-6467740 1.0000 100 chr16:29943427-29943927 1.0000 100 chr2:169569890-169570390 1.0000 100 chr10:31646516-31647016 1.0000 100 chr20:1430074-1430574 1.0000 100 chr10:6141072-6141572 1.0000 100 chr14_GL000225v1_random: 1.0000 100 chr10:77162540-77163040 1.0000 100 chr16:70066718-70067218 1.0000 100 chr10:113524488-11352498 1.0000 100 chr17:26619784-26620284 1.0000 100 chr5:62233352-62233852 1.0000 100 chr11:126060729-12606122 1.0000 100 chr15:69760808-69761308 1.0000 100 chr17:44021163-44021663 1.0000 100 chrY:11327418-11327918 1.0000 100 chr9:18394811-18395311 1.0000 100 chr6:28589230-28589730 1.0000 100 chr16:15021454-15021954 1.0000 100 chr17:40314533-40315033 1.0000 100 chr6:28747607-28748107 1.0000 100 chr6:28795800-28796300 1.0000 100 chr7:105026679-105027179 1.0000 100 chr3:20083198-20083698 1.0000 100 chr17:46742759-46743259 1.0000 100 chr10:75622452-75622952 1.0000 100 chr1:199490764-199491264 1.0000 100 chr6:30907758-30908258 1.0000 100 chr5:61328038-61328538 1.0000 100 chr19:34218189-34218689 1.0000 100 chr1:226102929-226103429 1.0000 100 chr13:99145422-99145922 1.0000 100 chr13:45194225-45194725 1.0000 100 chr19:30394410-30394910 1.0000 100 chr11:46914239-46914739 1.0000 100 chr2:134919311-134919811 1.0000 100 chr7:117135399-117135899 1.0000 100 chr1:234974976-234975476 1.0000 100 chr1_KI270713v1_random:2 1.0000 100 chr3:126208507-126209007 1.0000 100 chr5:41788974-41789474 1.0000 100 chr17:77233782-77234282 1.0000 100 chr1:30811134-30811634 1.0000 100 chr8:26151267-26151767 1.0000 100 chr8:7109180-7109680 1.0000 100 chr17:41860481-41860981 1.0000 100 chr1:157044254-157044754 1.0000 100 chr9:3410429-3410929 1.0000 100 chr1:115668990-115669490 1.0000 100 chr9:11171-11671 1.0000 100 chr6:31777110-31777610 1.0000 100 chr7:101941959-101942459 1.0000 100 chr6:170280345-170280845 1.0000 100 chr5:138306952-138307452 1.0000 100 chr7:141737995-141738495 1.0000 100 chr17:36133558-36134058 1.0000 100 chr12:111819779-11182027 1.0000 100 chr7:69609969-69610469 1.0000 100 chr8:37229054-37229554 1.0000 100 chrX:150325312-150325812 1.0000 100 chr5:50668042-50668542 1.0000 100 chr7:114481939-114482439 1.0000 100 chr10:63267226-63267726 1.0000 100 chr7:99699102-99699602 1.0000 100 chr7:129332673-129333173 1.0000 100 chr15:60255408-60255908 1.0000 100 chr22:30017315-30017815 1.0000 100 chr16:19517270-19517770 1.0000 100 chr7:99751548-99752048 1.0000 100 chr19:41501316-41501816 1.0000 100 chr14_GL000225v1_random: 1.0000 100 chr7:103100300-103100800 1.0000 100 chr17:26603654-26604154 1.0000 100 chr14_GL000225v1_random: 1.0000 100 chr7:104932218-104932718 1.0000 100 chr19:50388494-50388994 1.0000 100 chr7:94446292-94446792 1.0000 100 chr8:37256709-37257209 1.0000 100 chr1:125179940-125180440 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 599 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59900 N= 599 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.266 C 0.234 G 0.234 T 0.266 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background): A 0.273 C 0.228 G 0.228 T 0.273 ******************************************************************************** ******************************************************************************** MOTIF TDWTAAATAGTY MEME-1 width = 12 sites = 164 llr = 1570 E-value = 1.4e-124 ******************************************************************************** -------------------------------------------------------------------------------- Motif TDWTAAATAGTY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 233:9aa:a1:1 pos.-specific C 2111::::::23 probability G 142::::::8:: matrix T 6249:::a:185 bits 2.1 1.9 *** 1.7 **** 1.5 ***** Relative 1.3 ******** Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.6 ******** 0.4 * ********* 0.2 ************ 0.0 ------------ Multilevel TGTTAAATAGTT consensus AA C sequence TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDWTAAATAGTY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr15:60255408-60255908 - 79 1.15e-07 CATCATCAGT TGTTAAATAGTT AGGCTGCCAA chr7:69761239-69761739 + 36 1.15e-07 GGGCTGTTAA TGTTAAATAGTT CAGTCCTGTT chr9:14478778-14479278 + 37 1.15e-07 TCCTTGCAGA TGTTAAATAGTT GGGATTAGAC chr15:65830875-65831375 - 75 1.15e-07 TATTAGAATA TGTTAAATAGTT TGTGCAGAAC chr3:157051033-157051533 - 62 1.15e-07 GGAGTCAGAG TGTTAAATAGTT CATTCTATGA chr7:94446292-94446792 - 18 3.27e-07 TTACGTGAAC TGTTAAATAGTC CATCTGCAAT chr2:134919311-134919811 + 48 3.27e-07 TCGTAGCCAT TGATAAATAGTT CCAGGGCCCT chr1:244655160-244655660 + 33 3.27e-07 TTTATCGGAA TGATAAATAGTT GAATTATTAG chr16:74996953-74997453 + 44 3.27e-07 ACCTAGCACT TGATAAATAGTT GTTCAGCAGT chr17:8849256-8849756 + 45 3.27e-07 tataggtttt tgttaAATAGTC ACAAGTATTT chr4:138869142-138869642 - 70 3.27e-07 GTTTCCATAA TGTTAAATAGTC ATCCCATATT chr8:37256709-37257209 + 53 4.65e-07 ATTATCATCT TATTAAATAGTT CTCCAGTTAG chr7:117135399-117135899 - 40 4.65e-07 TAACAGCTGT TATTAAATAGTT CCTTCCAACA chr14:63481408-63481908 - 28 4.65e-07 TTGTTAAAAC TATTAAATAGTT ATTGGAAATG chr11:120911843-12091234 - 38 4.65e-07 ATGATTTCTC TATTAAATAGTT TTTAATGGGT chr1:51838697-51839197 - 28 4.65e-07 ATAGACCAAG TATTAAATAGTT TTAACTTGGA chr3:192883554-192884054 + 27 4.65e-07 GATACATAAC TATTAAATAGTT CCCTGATCTG chr4:17262057-17262557 - 46 4.65e-07 TGGGTACTAC TATTAAATAGTT CAAAATGTTC chr6:2171475-2171975 - 32 5.61e-07 CTGGCTTCTG TGGTAAATAGTT TCACACTATG chr5:116524095-116524595 - 48 7.95e-07 CAGCTACTGA TGATAAATAGTC AGTTACTAAC chr13:110007200-11000770 - 49 7.95e-07 AGTCTCCAGT TTTTAAATAGTT CTCACTTTAT chr17:45579027-45579527 - 41 7.95e-07 AGTTACGCAG TGATAAATAGTC TTGCATACAG chr8:26151267-26151767 - 55 1.05e-06 TGCTCCACCT TAATAAATAGTT GACCTTTTAG chr10:51170753-51171253 + 39 1.05e-06 gctagaaagc tattaaatagtc aaagaggcag chr5:67133166-67133666 + 48 1.05e-06 GATGCCCATA TATTAAATAGTC TTAGAAACTG chr1:178166157-178166657 - 44 1.05e-06 GGATGCTAAC TATTAAATAGTC CAAGAGATCA chr6:110401506-110402006 + 12 1.05e-06 aatatcacag taataaatagtt caggcaaaaa chr6:75827099-75827599 + 70 1.05e-06 TACCTGCATC TAATAAATAGTT CAGTCTGTCT chr1:240613735-240614235 + 57 1.13e-06 CTGTCCAACT TGGTAAATAGTC ATTTATGTTA chr13:35891803-35892303 + 15 1.13e-06 TTTTAGCATA TGGTAAATAGTC TTGAATGATT chr10:63267226-63267726 + 38 1.59e-06 ATGAAATTTG TAGTAAATAGTT CATGGGTCTA chr11:46914239-46914739 - 51 1.59e-06 GAGTTTGACC TTATAAATAGTT CTGATGACTG chr3:20083198-20083698 + 39 1.59e-06 ATTGTCAGTA TAGTAAATAGTT TAGCTTTGCA chr8:90701116-90701616 + 36 1.59e-06 aagggctgga tagtaaatagtt taggctttgc chr7:81689824-81690324 - 33 1.59e-06 ATTACAGGCT TAGTAAATAGTT CTTATCGTTC chr1:199490764-199491264 + 79 1.94e-06 tgacagaaac agttaaatagtt atttttatga chr4:27005444-27005944 + 36 1.94e-06 CAGAGAAAAC AGTTAAATAGTT GCCACTATTG chr14:37001123-37001623 + 63 1.94e-06 tgcccagaga agttaaatagtt tgctcaaggg chr10:113524488-11352498 + 39 2.66e-06 tgctcagaga tgttaaatagct tgcctcagct chr5:140418793-140419293 - 60 2.66e-06 CTGGTAGGAA TGTTAAATAGTA CAGCTGCAGA chrX:31836379-31836879 + 48 2.66e-06 ATTTCACTGA TTATAAATAGTC CACGTCAATG chr6:53306891-53307391 - 23 2.77e-06 AGTAGACACT CATTAAATAGTT TTTAACTCAG chr6:106620898-106621398 - 50 3.26e-06 GTTTTACCCT AGATAAATAGTT GAAAACAGAT chr5:41788974-41789474 - 47 4.09e-06 TTTATGGCTG CTTTAAATAGTT AGGATAGAAA chr16:10080366-10080866 - 57 4.09e-06 AGATCTACCC TGATAAATAGCT GCTGCCGTGG chr13:27451138-27451638 + 54 4.09e-06 ACTACTAAAG CTTTAAATAGTT CTTTGGGAGC chr17:60439492-60439992 - 49 4.09e-06 TCCTGCTGCT CTTTAAATAGTT TGAGTATTTT chr6:82170347-82170847 - 51 4.09e-06 CATATACAGG AATTAAATAGTT TGGAAGAGGG chr7:99751548-99752048 + 16 4.66e-06 AATCATTGCA AGGTAAATAGTT CTGTGTATGA chr7:99699102-99699602 + 2 4.66e-06 A AGGTAAATAGTT CTGTGTATGA chr16:1704419-1704919 + 11 4.66e-06 TTTCTATTAG CATTAAATAGTC ACTGATGTGG chr1:177883509-177884009 - 47 5.31e-06 TGATCTAACC TCGTAAATAGTT CTGAAATGTC chr8:101647205-101647705 - 39 5.31e-06 TTGCTGCTGC AGATAAATAGTC TACAATTCTC chr9:4262526-4263026 - 54 6.52e-06 GGGGATGCTG TGATAAATAGCC AGTGTGGTAT chr1:193177468-193177968 + 45 6.52e-06 cttgtacaat cagtaaatagtt tctactGCTG chr12:100688412-10068891 + 63 6.52e-06 TGTGCCAGAA CTATAAATAGTT CTCCTGACAT chr8:80837975-80838475 + 17 6.52e-06 CTTCTTCATG GGTTAAATAGTT CATTGCAGCT chr2:69138048-69138548 + 30 6.52e-06 ATTGTCAACT CTTTAAATAGTC CAACATTGGC chr8:21492216-21492716 + 77 6.52e-06 ACTGAAGGGG AAATAAATAGTT ATAGCAGCTG chr15:71238823-71239323 + 37 7.04e-06 TTGGTAGAGC TATTAAATAGCC AAACTAGAGC chr7:105026679-105027179 + 25 7.91e-06 TTACCTCCTA AAGTAAATAGTT CATTAAGGAT chr5:123578339-123578839 + 59 7.91e-06 tgagcagaac tgttaaatattt ttgaagtcta chr10:97653164-97653664 + 3 7.91e-06 gg atataaatagtt cctactttgt chrX:53581204-53581704 - 66 7.91e-06 GGCAAACAAT ATATAAATAGTT CAGTATCTCC chrX:104191492-104191992 - 62 7.91e-06 GATGACCGTT AAGTAAATAGTT TCCAAGTATT chr18:47821621-47822121 + 36 7.91e-06 ttatcattct tgttaaatattt tatagtgacc chr4:102817564-102818064 - 48 9.31e-06 ATTTCCAGTC CAGTAAATAGTC TTGCTGTGGG chr16:24723658-24724158 - 50 9.31e-06 ACTATCACTA CTATAAATAGTC ACAGCAGTGA chr5:140190171-140190671 + 21 9.31e-06 atgtatgagg cagtaaatagtc cattagaagt chr1:17724110-17724610 + 26 9.31e-06 tgatgattca ccttaaatagtt gagaaaacag chr13:99145422-99145922 - 32 1.11e-05 TTGTCGAACT ATATAAATAGTC CTGTACTGAG chr20:1430074-1430574 + 42 1.11e-05 gttcttcagc ttgtaaatagta tgtcatggga chr6:6467240-6467740 - 22 1.11e-05 CTGACCCATG TGTTAAATATTC ATCGCCCAGA chr12:102216018-10221651 - 53 1.11e-05 AAAAAGTTAA CTGTAAATAGTC TCAGGCAGGT chr1:63381690-63382190 - 32 1.11e-05 TGATCACATC CTGTAAATAGTC ACTCTACTGC chr7:148105799-148106299 - 53 1.11e-05 TAGCCACACC TTCTAAATAGTC TGTGCTGTGT chr1:92940495-92940995 + 9 1.23e-05 caccataa gtttaaatagtt gcaaactgct chr2:171879794-171880294 - 71 1.23e-05 CTTGCAGTAT CCATAAATAGTT CAGTATGTAG chr10:98432288-98432788 - 60 1.23e-05 TCAAGGGATG TGTTAAATAGCA GATGAGACAT chr22:36534952-36535452 - 71 1.23e-05 TCAAGGGATG TGTTAAATAGCA GATGAGACAT chr1:213989659-213990159 + 35 1.23e-05 TGGTGCTTAG TCTTAAATAGCT CAAGGAGGCA chr4:119625739-119626239 + 71 1.23e-05 GGACCTGCAC TATTAAATATTT TACACTTTCA chr17:44021163-44021663 + 62 1.34e-05 tctgcctgct gattaaatagtc tgtcaagaaa chr4:453203-453703 - 52 1.34e-05 TCTGCCAGCT GATTAAATAGTC TGTCAAGAGA chr19:19700441-19700941 + 49 1.34e-05 tcatcctgct gattaaatagtc tgtcaagaga chr12:121874909-12187540 + 9 1.34e-05 aagccata tggtaaatattt ctgctttgtg chr7:104932218-104932718 + 70 1.51e-05 TATCCCAGCC TGTTCAATAGTT CTCTCCCCAT chr15:38868647-38869147 - 54 1.51e-05 TTTTCCCCCC ACTTAAATAGTC TATTGAAGAG chr3:171281209-171281709 - 50 1.51e-05 GACTTAAATA AGATAAATAGCT TGCTCATGAT chr18:70279366-70279866 + 24 1.51e-05 cctggctagt ttttaaatattt tatagggatg chr7:18576104-18576604 - 59 1.51e-05 TGGCCCCTAC TCCTAAATAGTT TTTGAAGCCA chr6:117916409-117916909 - 42 1.51e-05 TGTCCTGTAC TCCTAAATAGTT TCCCTGCCTC chr9:8975936-8976436 - 75 1.51e-05 TTACCCTAAC TATCAAATAGTT TAAACACAAA chr5:61328038-61328538 - 20 1.69e-05 CTGGCCCACT TCATAAATAGTA CTCCCAGTAG chr19:50388494-50388994 - 71 1.83e-05 TGACCACAAC TTTCAAATAGTT CAGCCAAAAA chr7:107836139-107836639 + 21 1.83e-05 ttgctattct tTTCAAATAGTT CAGGAGGAAG chr5:139696109-139696609 + 26 1.83e-05 agtaggtgtt cattaaatagcc ttgattGCCA chr12:93847990-93848490 - 21 2.08e-05 ATGACACTAC TGATCAATAGTT GAGATTAACA chr14:96359946-96360446 - 70 2.08e-05 TGTCATAAAT ACATAAATAGTC AGTGGAGAAT chr12:79634393-79634893 - 13 2.08e-05 ATTTCATAAC TAACAAATAGTT ACACCTGGCA chr5:50668042-50668542 + 35 2.30e-05 CGTCCCTCGG TTTTAAATAGCA GGAGGAGGGG chr7:30304903-30305403 - 57 2.30e-05 GATTTCCATG GTATAAATAGTC TGTCCTATTT chr1:30811134-30811634 + 50 2.74e-05 tgtccccatc tagtaaatattc agaactttaa chr19:30394410-30394910 + 48 2.74e-05 TTTGCCCCAC CTGTAAATAGTA CAGTCTGGAA chr6:151292896-151293396 - 3 2.74e-05 GCCACAGAAA GGCTAAATAGTT TC chr10:75622452-75622952 - 61 2.95e-05 GCAAACCATC AGTCAAATAGTT TGTTCTTTCT chr9:18394811-18395311 + 43 3.19e-05 TGTCCCAACT TGGTAAATAGTG CATTTTTCAG chr7:44735421-44735921 + 71 3.19e-05 ctggtgggaa tgtcaaatagta cagctgcttt chr6:20130516-20131016 - 41 3.19e-05 GCTAATGAAA GATTAAATAGTA TTGGCTGGTT chr1:119645819-119646319 - 65 3.19e-05 TGGATTGAAG TGGTAAATAGTG ACCTCACATC chr7:129332673-129333173 - 54 3.49e-05 AGTCATCATA TTCTAAATAGCC AAATAAACAG chr12:125034764-12503526 + 45 3.49e-05 gttgttgccc ttatcaatagtt cactcttttt chr7:123573840-123574340 + 50 3.49e-05 ATTGTTAGCC TGTTAAATATCC CCTTTGGAGT chr11:124796261-12479676 - 30 3.49e-05 ATCATAGCAC CTGTAAATAGCC ACTGTACTCC chr12:111819779-11182027 + 53 3.75e-05 atgtttaggt ccataaatagct gcatgagctt chr3:11476819-11477319 - 40 3.75e-05 ACTGATTGCC AGTTAAATAATT ATAATCAAGT chr2:12296809-12297309 + 22 3.75e-05 TTCAGACATC AGTCAAATAGTC ATACATAATA chr16:30619623-30620123 + 37 3.75e-05 atgcttaggt ccataaatagct gctcggcctt chr13:114230250-11423075 - 43 4.09e-05 ATTTTGCATC CTTCAAATAGTT CAGACTGCTC chr17:29257672-29258172 + 49 4.09e-05 TTCCCCAGCT TATAAAATAGTT CCAGTTTCGC chr16:14487539-14488039 - 54 4.09e-05 GCAATCAGGA TATAAAATAGTT CTGTCACCTT chr20:1812943-1813443 - 69 4.52e-05 GCCCAGAGTT CTATAAATATTT GTTCAATGGG chr1:39008191-39008691 - 70 4.52e-05 TCTAAACAGT TGTTCAATAGCT TTTTCTGTGA chr17:46194878-46195378 + 28 4.52e-05 ACACATACAC ACATAAATAGTA ATTCCACAAA chr10:43353399-43353899 + 40 4.52e-05 AATTTCGACT TCTTCAATAGTT CTTTCTGGTT chr4:55378763-55379263 - 35 4.85e-05 TTCCCCTTCC TTTAAAATAGTT TCTTTTGTCT chr10:74833193-74833693 - 80 5.29e-05 GCATTTAAG TGCTCAATAGTT TCAGTCTCTA chr6:30142610-30143110 + 82 5.29e-05 TTATTCTTTC TGTTATATAGTT TTGACAA chr8:119579545-119580045 - 39 5.29e-05 ATAGTCACAA TGATAAATAATA GCAGCTGGTG chr19:19402959-19403459 - 65 5.29e-05 CTGGACTAAA CAGCAAATAGTT CAGCTGGGTG chr10:99659903-99660403 + 30 5.29e-05 TTTCGAGGGC TGATAAATAATA GTTTCTAGCC chrX:150325312-150325812 + 4 5.78e-05 ttt gtctaaatagtc tccatcagca chr1:23431386-23431886 - 27 5.78e-05 ATTTCCACAC CTCTAAATAGTA CCTGCCTAAA chr15:57218150-57218650 + 43 5.78e-05 ATTGGAAAAC ATTTAAATAGCA AAACGTGTCT chr1:206037050-206037550 - 23 6.18e-05 ATGATCATGC CTATAAATAGCA CGACACTTCA chr3:169967465-169967965 - 39 6.18e-05 ATGAGACGAC TAATAAATATCC TGAGTCCAAG chr3:197308474-197308974 + 36 6.18e-05 agcaagctct gtataaatagcc tctgttctca chr13:39773861-39774361 - 48 6.18e-05 GATGAGCATC CTATAAATAGCA TGCTCTCATT chr5:135705227-135705727 + 49 6.72e-05 gattagcaca ctgtaaatattc cgtaagtatt chr1:226102929-226103429 - 61 7.24e-05 ATGATCGTGC CTGTAAATAGCA ACTGCTTTCC chr2:202638672-202639172 + 42 7.24e-05 TGTTTCACTC TAGTAAATATCC ATGCAGAGTA chr13:50072624-50073124 - 25 7.24e-05 TTAATCCCAC TGGTTAATAGTT TATTAATCCA chr8:28624917-28625417 - 39 7.24e-05 TGCACTTAGT AGGTAAATAATC TGCAGAAAAA chr9:85745117-85745617 - 58 7.24e-05 AATGGTTGAT TGTTGAATAGTT ATAACAATCA chr8:120827449-120827949 - 83 7.24e-05 GCAAGT TACTCAATAGTT TCTTCCACTG chr7:114481939-114482439 - 17 7.73e-05 ATATCACAAT GCATAAATAGTA GCACAACAAG chr20:34049338-34049838 + 35 7.73e-05 ACCTGTCAAA TGGTAAATAACC ACTGTCCTAT chr17:59912215-59912715 + 41 7.73e-05 ttataaaaat aagtaaataaTT GATTGCCCAT chr14:24425628-24426128 + 28 7.73e-05 TGCAAAATAT ACTCAAATAGTT CCACCAGTAT chr12:26112743-26113243 + 59 7.73e-05 TGACTAATTG TCGTAAATAATC ATTGTGTTGG chr7:133572498-133572998 + 82 7.73e-05 ttgtgaTTGC TGATTAATAGTC Caagaat chr19:3065861-3066361 + 57 8.33e-05 GTGGCCCACA CTATAAATAATC AACCAAGCCA chr19:44258299-44258799 + 3 8.33e-05 GC TGCTAAATATTA CTTCATTTTT chr1:234974976-234975476 - 46 8.97e-05 ATTCAGCCAC TGATAAATATCA CCCCATTATC chr1:51745128-51745628 + 64 8.97e-05 TAGACCTAAC TGTTAAATAGAC CTATTATTTG chr9:135468731-135469231 - 21 8.97e-05 GTGCAGGATC TGCAAAATAGTT CAAGCACTGG chr5:62233352-62233852 + 13 9.58e-05 ACTGGGAAGC CCATAAATAGCA GCAGAGAGGA chr22:38924319-38924819 + 41 9.58e-05 atgactcaca aagtaaataatc tgtaaatgaa chr8:37229054-37229554 + 69 1.03e-04 CTTTCAAGCC TATCAAATATTC TTATTTGCTT chr19:40906461-40906961 + 4 1.18e-04 tat tgctaaataata ttgtatggat chr19:46793107-46793607 - 69 1.27e-04 TCTCAGTGTT TGATAAATATTG GCCAGATGAG chr8:30254860-30255360 + 73 1.35e-04 TGAGGAGAAT CAATAAATAACT AGGGAGTAAA chr1:115668990-115669490 - 80 1.54e-04 GCTTCAGCA ATATAAATATCC TATAGAATGG chrUn_KI270466v1:211-711 + 57 3.02e-04 gtacagcata taatatatattt ggggtatttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDWTAAATAGTY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:60255408-60255908 1.2e-07 78_[-1]_10 chr7:69761239-69761739 1.2e-07 35_[+1]_53 chr9:14478778-14479278 1.2e-07 36_[+1]_52 chr15:65830875-65831375 1.2e-07 74_[-1]_14 chr3:157051033-157051533 1.2e-07 61_[-1]_27 chr7:94446292-94446792 3.3e-07 17_[-1]_71 chr2:134919311-134919811 3.3e-07 47_[+1]_41 chr1:244655160-244655660 3.3e-07 32_[+1]_56 chr16:74996953-74997453 3.3e-07 43_[+1]_45 chr17:8849256-8849756 3.3e-07 44_[+1]_44 chr4:138869142-138869642 3.3e-07 69_[-1]_19 chr8:37256709-37257209 4.6e-07 52_[+1]_36 chr7:117135399-117135899 4.6e-07 39_[-1]_49 chr14:63481408-63481908 4.6e-07 27_[-1]_61 chr11:120911843-12091234 4.6e-07 37_[-1]_51 chr1:51838697-51839197 4.6e-07 27_[-1]_61 chr3:192883554-192884054 4.6e-07 26_[+1]_62 chr4:17262057-17262557 4.6e-07 45_[-1]_43 chr6:2171475-2171975 5.6e-07 31_[-1]_57 chr5:116524095-116524595 8e-07 47_[-1]_41 chr13:110007200-11000770 8e-07 48_[-1]_40 chr17:45579027-45579527 8e-07 40_[-1]_48 chr8:26151267-26151767 1e-06 54_[-1]_34 chr10:51170753-51171253 1e-06 38_[+1]_50 chr5:67133166-67133666 1e-06 47_[+1]_41 chr1:178166157-178166657 1e-06 43_[-1]_45 chr6:110401506-110402006 1e-06 11_[+1]_77 chr6:75827099-75827599 1e-06 69_[+1]_19 chr1:240613735-240614235 1.1e-06 56_[+1]_32 chr13:35891803-35892303 1.1e-06 14_[+1]_74 chr10:63267226-63267726 1.6e-06 37_[+1]_51 chr11:46914239-46914739 1.6e-06 50_[-1]_38 chr3:20083198-20083698 1.6e-06 38_[+1]_50 chr8:90701116-90701616 1.6e-06 35_[+1]_53 chr7:81689824-81690324 1.6e-06 32_[-1]_56 chr1:199490764-199491264 1.9e-06 78_[+1]_10 chr4:27005444-27005944 1.9e-06 35_[+1]_53 chr14:37001123-37001623 1.9e-06 62_[+1]_26 chr10:113524488-11352498 2.7e-06 38_[+1]_50 chr5:140418793-140419293 2.7e-06 59_[-1]_29 chrX:31836379-31836879 2.7e-06 47_[+1]_41 chr6:53306891-53307391 2.8e-06 22_[-1]_66 chr6:106620898-106621398 3.3e-06 49_[-1]_39 chr5:41788974-41789474 4.1e-06 46_[-1]_42 chr16:10080366-10080866 4.1e-06 56_[-1]_32 chr13:27451138-27451638 4.1e-06 53_[+1]_35 chr17:60439492-60439992 4.1e-06 48_[-1]_40 chr6:82170347-82170847 4.1e-06 50_[-1]_38 chr7:99751548-99752048 4.7e-06 15_[+1]_73 chr7:99699102-99699602 4.7e-06 1_[+1]_87 chr16:1704419-1704919 4.7e-06 10_[+1]_78 chr1:177883509-177884009 5.3e-06 46_[-1]_42 chr8:101647205-101647705 5.3e-06 38_[-1]_50 chr9:4262526-4263026 6.5e-06 53_[-1]_35 chr1:193177468-193177968 6.5e-06 44_[+1]_44 chr12:100688412-10068891 6.5e-06 62_[+1]_26 chr8:80837975-80838475 6.5e-06 16_[+1]_72 chr2:69138048-69138548 6.5e-06 29_[+1]_59 chr8:21492216-21492716 6.5e-06 76_[+1]_12 chr15:71238823-71239323 7e-06 36_[+1]_52 chr7:105026679-105027179 7.9e-06 24_[+1]_64 chr5:123578339-123578839 7.9e-06 58_[+1]_30 chr10:97653164-97653664 7.9e-06 2_[+1]_86 chrX:53581204-53581704 7.9e-06 65_[-1]_23 chrX:104191492-104191992 7.9e-06 61_[-1]_27 chr18:47821621-47822121 7.9e-06 35_[+1]_53 chr4:102817564-102818064 9.3e-06 47_[-1]_41 chr16:24723658-24724158 9.3e-06 49_[-1]_39 chr5:140190171-140190671 9.3e-06 20_[+1]_68 chr1:17724110-17724610 9.3e-06 25_[+1]_63 chr13:99145422-99145922 1.1e-05 31_[-1]_57 chr20:1430074-1430574 1.1e-05 41_[+1]_47 chr6:6467240-6467740 1.1e-05 21_[-1]_67 chr12:102216018-10221651 1.1e-05 52_[-1]_36 chr1:63381690-63382190 1.1e-05 31_[-1]_57 chr7:148105799-148106299 1.1e-05 52_[-1]_36 chr1:92940495-92940995 1.2e-05 8_[+1]_80 chr2:171879794-171880294 1.2e-05 70_[-1]_18 chr10:98432288-98432788 1.2e-05 59_[-1]_29 chr22:36534952-36535452 1.2e-05 70_[-1]_18 chr1:213989659-213990159 1.2e-05 34_[+1]_54 chr4:119625739-119626239 1.2e-05 70_[+1]_18 chr17:44021163-44021663 1.3e-05 61_[+1]_27 chr4:453203-453703 1.3e-05 51_[-1]_37 chr19:19700441-19700941 1.3e-05 48_[+1]_40 chr12:121874909-12187540 1.3e-05 8_[+1]_80 chr7:104932218-104932718 1.5e-05 69_[+1]_19 chr15:38868647-38869147 1.5e-05 53_[-1]_35 chr3:171281209-171281709 1.5e-05 49_[-1]_39 chr18:70279366-70279866 1.5e-05 23_[+1]_65 chr7:18576104-18576604 1.5e-05 58_[-1]_30 chr6:117916409-117916909 1.5e-05 41_[-1]_47 chr9:8975936-8976436 1.5e-05 74_[-1]_14 chr5:61328038-61328538 1.7e-05 19_[-1]_69 chr19:50388494-50388994 1.8e-05 70_[-1]_18 chr7:107836139-107836639 1.8e-05 20_[+1]_68 chr5:139696109-139696609 1.8e-05 25_[+1]_63 chr12:93847990-93848490 2.1e-05 20_[-1]_68 chr14:96359946-96360446 2.1e-05 69_[-1]_19 chr12:79634393-79634893 2.1e-05 12_[-1]_76 chr5:50668042-50668542 2.3e-05 34_[+1]_54 chr7:30304903-30305403 2.3e-05 56_[-1]_32 chr1:30811134-30811634 2.7e-05 49_[+1]_39 chr19:30394410-30394910 2.7e-05 47_[+1]_41 chr6:151292896-151293396 2.7e-05 2_[-1]_86 chr10:75622452-75622952 2.9e-05 60_[-1]_28 chr9:18394811-18395311 3.2e-05 42_[+1]_46 chr7:44735421-44735921 3.2e-05 70_[+1]_18 chr6:20130516-20131016 3.2e-05 40_[-1]_48 chr1:119645819-119646319 3.2e-05 64_[-1]_24 chr7:129332673-129333173 3.5e-05 53_[-1]_35 chr12:125034764-12503526 3.5e-05 44_[+1]_44 chr7:123573840-123574340 3.5e-05 49_[+1]_39 chr11:124796261-12479676 3.5e-05 29_[-1]_59 chr12:111819779-11182027 3.8e-05 52_[+1]_36 chr3:11476819-11477319 3.8e-05 39_[-1]_49 chr2:12296809-12297309 3.8e-05 21_[+1]_67 chr16:30619623-30620123 3.8e-05 36_[+1]_52 chr13:114230250-11423075 4.1e-05 42_[-1]_46 chr17:29257672-29258172 4.1e-05 48_[+1]_40 chr16:14487539-14488039 4.1e-05 53_[-1]_35 chr20:1812943-1813443 4.5e-05 68_[-1]_20 chr1:39008191-39008691 4.5e-05 69_[-1]_19 chr17:46194878-46195378 4.5e-05 27_[+1]_61 chr10:43353399-43353899 4.5e-05 39_[+1]_49 chr4:55378763-55379263 4.8e-05 34_[-1]_54 chr10:74833193-74833693 5.3e-05 79_[-1]_9 chr6:30142610-30143110 5.3e-05 81_[+1]_7 chr8:119579545-119580045 5.3e-05 38_[-1]_50 chr19:19402959-19403459 5.3e-05 64_[-1]_24 chr10:99659903-99660403 5.3e-05 29_[+1]_59 chrX:150325312-150325812 5.8e-05 3_[+1]_85 chr1:23431386-23431886 5.8e-05 26_[-1]_62 chr15:57218150-57218650 5.8e-05 42_[+1]_46 chr1:206037050-206037550 6.2e-05 22_[-1]_66 chr3:169967465-169967965 6.2e-05 38_[-1]_50 chr3:197308474-197308974 6.2e-05 35_[+1]_53 chr13:39773861-39774361 6.2e-05 47_[-1]_41 chr5:135705227-135705727 6.7e-05 48_[+1]_40 chr1:226102929-226103429 7.2e-05 60_[-1]_28 chr2:202638672-202639172 7.2e-05 41_[+1]_47 chr13:50072624-50073124 7.2e-05 24_[-1]_64 chr8:28624917-28625417 7.2e-05 38_[-1]_50 chr9:85745117-85745617 7.2e-05 57_[-1]_31 chr8:120827449-120827949 7.2e-05 82_[-1]_6 chr7:114481939-114482439 7.7e-05 16_[-1]_72 chr20:34049338-34049838 7.7e-05 34_[+1]_54 chr17:59912215-59912715 7.7e-05 40_[+1]_48 chr14:24425628-24426128 7.7e-05 27_[+1]_61 chr12:26112743-26113243 7.7e-05 58_[+1]_30 chr7:133572498-133572998 7.7e-05 81_[+1]_7 chr19:3065861-3066361 8.3e-05 56_[+1]_32 chr19:44258299-44258799 8.3e-05 2_[+1]_86 chr1:234974976-234975476 9e-05 45_[-1]_43 chr1:51745128-51745628 9e-05 63_[+1]_25 chr9:135468731-135469231 9e-05 20_[-1]_68 chr5:62233352-62233852 9.6e-05 12_[+1]_76 chr22:38924319-38924819 9.6e-05 40_[+1]_48 chr8:37229054-37229554 0.0001 68_[+1]_20 chr19:40906461-40906961 0.00012 3_[+1]_85 chr19:46793107-46793607 0.00013 68_[-1]_20 chr8:30254860-30255360 0.00013 72_[+1]_16 chr1:115668990-115669490 0.00015 79_[-1]_9 chrUn_KI270466v1:211-711 0.0003 56_[+1]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDWTAAATAGTY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TDWTAAATAGTY width=12 seqs=164 chr15:60255408-60255908 ( 79) TGTTAAATAGTT 1 chr7:69761239-69761739 ( 36) TGTTAAATAGTT 1 chr9:14478778-14479278 ( 37) TGTTAAATAGTT 1 chr15:65830875-65831375 ( 75) TGTTAAATAGTT 1 chr3:157051033-157051533 ( 62) TGTTAAATAGTT 1 chr7:94446292-94446792 ( 18) TGTTAAATAGTC 1 chr2:134919311-134919811 ( 48) TGATAAATAGTT 1 chr1:244655160-244655660 ( 33) TGATAAATAGTT 1 chr16:74996953-74997453 ( 44) TGATAAATAGTT 1 chr17:8849256-8849756 ( 45) TGTTAAATAGTC 1 chr4:138869142-138869642 ( 70) TGTTAAATAGTC 1 chr8:37256709-37257209 ( 53) TATTAAATAGTT 1 chr7:117135399-117135899 ( 40) TATTAAATAGTT 1 chr14:63481408-63481908 ( 28) TATTAAATAGTT 1 chr11:120911843-12091234 ( 38) TATTAAATAGTT 1 chr1:51838697-51839197 ( 28) TATTAAATAGTT 1 chr3:192883554-192884054 ( 27) TATTAAATAGTT 1 chr4:17262057-17262557 ( 46) TATTAAATAGTT 1 chr6:2171475-2171975 ( 32) TGGTAAATAGTT 1 chr5:116524095-116524595 ( 48) TGATAAATAGTC 1 chr13:110007200-11000770 ( 49) TTTTAAATAGTT 1 chr17:45579027-45579527 ( 41) TGATAAATAGTC 1 chr8:26151267-26151767 ( 55) TAATAAATAGTT 1 chr10:51170753-51171253 ( 39) TATTAAATAGTC 1 chr5:67133166-67133666 ( 48) TATTAAATAGTC 1 chr1:178166157-178166657 ( 44) TATTAAATAGTC 1 chr6:110401506-110402006 ( 12) TAATAAATAGTT 1 chr6:75827099-75827599 ( 70) TAATAAATAGTT 1 chr1:240613735-240614235 ( 57) TGGTAAATAGTC 1 chr13:35891803-35892303 ( 15) TGGTAAATAGTC 1 chr10:63267226-63267726 ( 38) TAGTAAATAGTT 1 chr11:46914239-46914739 ( 51) TTATAAATAGTT 1 chr3:20083198-20083698 ( 39) TAGTAAATAGTT 1 chr8:90701116-90701616 ( 36) TAGTAAATAGTT 1 chr7:81689824-81690324 ( 33) TAGTAAATAGTT 1 chr1:199490764-199491264 ( 79) AGTTAAATAGTT 1 chr4:27005444-27005944 ( 36) AGTTAAATAGTT 1 chr14:37001123-37001623 ( 63) AGTTAAATAGTT 1 chr10:113524488-11352498 ( 39) TGTTAAATAGCT 1 chr5:140418793-140419293 ( 60) TGTTAAATAGTA 1 chrX:31836379-31836879 ( 48) TTATAAATAGTC 1 chr6:53306891-53307391 ( 23) CATTAAATAGTT 1 chr6:106620898-106621398 ( 50) AGATAAATAGTT 1 chr5:41788974-41789474 ( 47) CTTTAAATAGTT 1 chr16:10080366-10080866 ( 57) TGATAAATAGCT 1 chr13:27451138-27451638 ( 54) CTTTAAATAGTT 1 chr17:60439492-60439992 ( 49) CTTTAAATAGTT 1 chr6:82170347-82170847 ( 51) AATTAAATAGTT 1 chr7:99751548-99752048 ( 16) AGGTAAATAGTT 1 chr7:99699102-99699602 ( 2) AGGTAAATAGTT 1 chr16:1704419-1704919 ( 11) CATTAAATAGTC 1 chr1:177883509-177884009 ( 47) TCGTAAATAGTT 1 chr8:101647205-101647705 ( 39) AGATAAATAGTC 1 chr9:4262526-4263026 ( 54) TGATAAATAGCC 1 chr1:193177468-193177968 ( 45) CAGTAAATAGTT 1 chr12:100688412-10068891 ( 63) CTATAAATAGTT 1 chr8:80837975-80838475 ( 17) GGTTAAATAGTT 1 chr2:69138048-69138548 ( 30) CTTTAAATAGTC 1 chr8:21492216-21492716 ( 77) AAATAAATAGTT 1 chr15:71238823-71239323 ( 37) TATTAAATAGCC 1 chr7:105026679-105027179 ( 25) AAGTAAATAGTT 1 chr5:123578339-123578839 ( 59) TGTTAAATATTT 1 chr10:97653164-97653664 ( 3) ATATAAATAGTT 1 chrX:53581204-53581704 ( 66) ATATAAATAGTT 1 chrX:104191492-104191992 ( 62) AAGTAAATAGTT 1 chr18:47821621-47822121 ( 36) TGTTAAATATTT 1 chr4:102817564-102818064 ( 48) CAGTAAATAGTC 1 chr16:24723658-24724158 ( 50) CTATAAATAGTC 1 chr5:140190171-140190671 ( 21) CAGTAAATAGTC 1 chr1:17724110-17724610 ( 26) CCTTAAATAGTT 1 chr13:99145422-99145922 ( 32) ATATAAATAGTC 1 chr20:1430074-1430574 ( 42) TTGTAAATAGTA 1 chr6:6467240-6467740 ( 22) TGTTAAATATTC 1 chr12:102216018-10221651 ( 53) CTGTAAATAGTC 1 chr1:63381690-63382190 ( 32) CTGTAAATAGTC 1 chr7:148105799-148106299 ( 53) TTCTAAATAGTC 1 chr1:92940495-92940995 ( 9) GTTTAAATAGTT 1 chr2:171879794-171880294 ( 71) CCATAAATAGTT 1 chr10:98432288-98432788 ( 60) TGTTAAATAGCA 1 chr22:36534952-36535452 ( 71) TGTTAAATAGCA 1 chr1:213989659-213990159 ( 35) TCTTAAATAGCT 1 chr4:119625739-119626239 ( 71) TATTAAATATTT 1 chr17:44021163-44021663 ( 62) GATTAAATAGTC 1 chr4:453203-453703 ( 52) GATTAAATAGTC 1 chr19:19700441-19700941 ( 49) GATTAAATAGTC 1 chr12:121874909-12187540 ( 9) TGGTAAATATTT 1 chr7:104932218-104932718 ( 70) TGTTCAATAGTT 1 chr15:38868647-38869147 ( 54) ACTTAAATAGTC 1 chr3:171281209-171281709 ( 50) AGATAAATAGCT 1 chr18:70279366-70279866 ( 24) TTTTAAATATTT 1 chr7:18576104-18576604 ( 59) TCCTAAATAGTT 1 chr6:117916409-117916909 ( 42) TCCTAAATAGTT 1 chr9:8975936-8976436 ( 75) TATCAAATAGTT 1 chr5:61328038-61328538 ( 20) TCATAAATAGTA 1 chr19:50388494-50388994 ( 71) TTTCAAATAGTT 1 chr7:107836139-107836639 ( 21) TTTCAAATAGTT 1 chr5:139696109-139696609 ( 26) CATTAAATAGCC 1 chr12:93847990-93848490 ( 21) TGATCAATAGTT 1 chr14:96359946-96360446 ( 70) ACATAAATAGTC 1 chr12:79634393-79634893 ( 13) TAACAAATAGTT 1 chr5:50668042-50668542 ( 35) TTTTAAATAGCA 1 chr7:30304903-30305403 ( 57) GTATAAATAGTC 1 chr1:30811134-30811634 ( 50) TAGTAAATATTC 1 chr19:30394410-30394910 ( 48) CTGTAAATAGTA 1 chr6:151292896-151293396 ( 3) GGCTAAATAGTT 1 chr10:75622452-75622952 ( 61) AGTCAAATAGTT 1 chr9:18394811-18395311 ( 43) TGGTAAATAGTG 1 chr7:44735421-44735921 ( 71) TGTCAAATAGTA 1 chr6:20130516-20131016 ( 41) GATTAAATAGTA 1 chr1:119645819-119646319 ( 65) TGGTAAATAGTG 1 chr7:129332673-129333173 ( 54) TTCTAAATAGCC 1 chr12:125034764-12503526 ( 45) TTATCAATAGTT 1 chr7:123573840-123574340 ( 50) TGTTAAATATCC 1 chr11:124796261-12479676 ( 30) CTGTAAATAGCC 1 chr12:111819779-11182027 ( 53) CCATAAATAGCT 1 chr3:11476819-11477319 ( 40) AGTTAAATAATT 1 chr2:12296809-12297309 ( 22) AGTCAAATAGTC 1 chr16:30619623-30620123 ( 37) CCATAAATAGCT 1 chr13:114230250-11423075 ( 43) CTTCAAATAGTT 1 chr17:29257672-29258172 ( 49) TATAAAATAGTT 1 chr16:14487539-14488039 ( 54) TATAAAATAGTT 1 chr20:1812943-1813443 ( 69) CTATAAATATTT 1 chr1:39008191-39008691 ( 70) TGTTCAATAGCT 1 chr17:46194878-46195378 ( 28) ACATAAATAGTA 1 chr10:43353399-43353899 ( 40) TCTTCAATAGTT 1 chr4:55378763-55379263 ( 35) TTTAAAATAGTT 1 chr10:74833193-74833693 ( 80) TGCTCAATAGTT 1 chr6:30142610-30143110 ( 82) TGTTATATAGTT 1 chr8:119579545-119580045 ( 39) TGATAAATAATA 1 chr19:19402959-19403459 ( 65) CAGCAAATAGTT 1 chr10:99659903-99660403 ( 30) TGATAAATAATA 1 chrX:150325312-150325812 ( 4) GTCTAAATAGTC 1 chr1:23431386-23431886 ( 27) CTCTAAATAGTA 1 chr15:57218150-57218650 ( 43) ATTTAAATAGCA 1 chr1:206037050-206037550 ( 23) CTATAAATAGCA 1 chr3:169967465-169967965 ( 39) TAATAAATATCC 1 chr3:197308474-197308974 ( 36) GTATAAATAGCC 1 chr13:39773861-39774361 ( 48) CTATAAATAGCA 1 chr5:135705227-135705727 ( 49) CTGTAAATATTC 1 chr1:226102929-226103429 ( 61) CTGTAAATAGCA 1 chr2:202638672-202639172 ( 42) TAGTAAATATCC 1 chr13:50072624-50073124 ( 25) TGGTTAATAGTT 1 chr8:28624917-28625417 ( 39) AGGTAAATAATC 1 chr9:85745117-85745617 ( 58) TGTTGAATAGTT 1 chr8:120827449-120827949 ( 83) TACTCAATAGTT 1 chr7:114481939-114482439 ( 17) GCATAAATAGTA 1 chr20:34049338-34049838 ( 35) TGGTAAATAACC 1 chr17:59912215-59912715 ( 41) AAGTAAATAATT 1 chr14:24425628-24426128 ( 28) ACTCAAATAGTT 1 chr12:26112743-26113243 ( 59) TCGTAAATAATC 1 chr7:133572498-133572998 ( 82) TGATTAATAGTC 1 chr19:3065861-3066361 ( 57) CTATAAATAATC 1 chr19:44258299-44258799 ( 3) TGCTAAATATTA 1 chr1:234974976-234975476 ( 46) TGATAAATATCA 1 chr1:51745128-51745628 ( 64) TGTTAAATAGAC 1 chr9:135468731-135469231 ( 21) TGCAAAATAGTT 1 chr5:62233352-62233852 ( 13) CCATAAATAGCA 1 chr22:38924319-38924819 ( 41) AAGTAAATAATC 1 chr8:37229054-37229554 ( 69) TATCAAATATTC 1 chr19:40906461-40906961 ( 4) TGCTAAATAATA 1 chr19:46793107-46793607 ( 69) TGATAAATATTG 1 chr8:30254860-30255360 ( 73) CAATAAATAACT 1 chr1:115668990-115669490 ( 80) ATATAAATATCC 1 chrUn_KI270466v1:211-711 ( 57) TAATATATATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDWTAAATAGTY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53311 bayes= 9.83267 E= 1.4e-124 -73 -27 -176 109 7 -113 71 -20 7 -164 -13 67 -348 -176 -1400 174 178 -241 -522 -448 186 -1400 -1400 -448 188 -1400 -1400 -1400 -1400 -1400 -1400 188 188 -1400 -1400 -1400 -202 -1400 186 -131 -548 -41 -1400 159 -102 42 -364 99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDWTAAATAGTY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 164 E= 1.4e-124 0.164634 0.189024 0.067073 0.579268 0.286585 0.103659 0.371951 0.237805 0.286585 0.073171 0.207317 0.432927 0.024390 0.067073 0.000000 0.908537 0.939024 0.042683 0.006098 0.012195 0.987805 0.000000 0.000000 0.012195 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.067073 0.000000 0.823171 0.109756 0.006098 0.170732 0.000000 0.823171 0.134146 0.304878 0.018293 0.542683 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDWTAAATAGTY MEME-1 regular expression -------------------------------------------------------------------------------- T[GAT][TAG]TAAATAGT[TC] -------------------------------------------------------------------------------- Time 360.18 secs. ******************************************************************************** ******************************************************************************** MOTIF ATAGGSTGGGTMATCA MEME-2 width = 16 sites = 88 llr = 1025 E-value = 2.2e-099 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATAGGSTGGGTMATCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 616312::1213a::a pos.-specific C 123:24::::24::a: probability G 321763:a9822:1:: matrix T :51:129:::61:9:: bits 2.1 1.9 * ** 1.7 * * ** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 * **** **** (16.8 bits) 0.9 * **** **** 0.6 * * **** **** 0.4 * *** ***** **** 0.2 **************** 0.0 ---------------- Multilevel ATAGGCTGGGTCATCA consensus GCCACG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGGSTGGGTMATCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr10:48285704-48286204 - 30 2.19e-10 TGAGTGGGGA ATAGGCTGGGTCATCA ATCATTAGAG chr7:103100300-103100800 - 48 4.38e-10 TCACTGCCCA ATAGGGTGGGTCATCA ATTAGGAGAA chr17:41860481-41860981 - 44 3.10e-09 TGTTTTCTCA AGAGGCTGGGTCATCA ATGAGAAGGT chr3:168883091-168883591 + 49 3.10e-09 GGAGGCACTG GTAGGGTGGGTCATCA CTCAGAATAC chr21:25709805-25710305 - 62 4.31e-09 CCATTTACAA GTAGGCTGGGTAATCA TCATTCTCTC chr17:80639564-80640064 + 63 8.27e-09 GGTGAAATGG ATAGGATGGGTAATCA AACTGGGTAC chr17:36133558-36134058 - 46 1.36e-08 ATAACTCTGT ACAGGTTGGGTCATCA AGGGCTCAGA chr9:127074607-127075107 - 25 2.43e-08 AATAACCTGA ATAGGGTGGGGAATCA GGAGAGGGCA chr5:138306952-138307452 + 37 3.00e-08 GCATATTCTT ATAGGATGGGCCATCA ATCAAAAATG chr2:227716473-227716973 + 33 3.47e-08 gagacatgtt gcagggtgggtaatca atcactctga chr14_GL000225v1_random: - 18 5.96e-08 CAAGAGTCCC ATCAGCTGGGTGATCA TTGCAGAGTT chr10:22318698-22319198 - 66 7.24e-08 TAATCTCTGG ATAGGATGGGGAATCA GTGTTCTAGG chr12:93821951-93822451 - 41 8.47e-08 GAGTGGCAGG GTAGGATGGGGCATCA AGCCTAAAGA chr14:54569383-54569883 - 37 9.98e-08 AAGGAAGCAA AGAGGGTGGATCATCA GTTACCCAAT chr2:169569890-169570390 + 61 1.35e-07 AATAACCCCT GAAGGTTGGGTCATCA TGTGAGAAAA chr3:171584915-171585415 - 22 1.35e-07 CCAAGAAAAT ATAGGGTGGAGCATCA ATAGCATCTG chr4:78213187-78213687 + 56 1.35e-07 ttgcagcaaa agaggctgggacatCA TTTCTTTCTT chr14_GL000225v1_random: - 33 1.35e-07 CAAGAGTTAC ATCACCTGGGTAATCA GTGCAGAAAT chr3:50238472-50238972 - 29 1.53e-07 GGCAGCCATG GCAGACTGGGTCATCA ATATCAAGCA chr11:123408586-12340908 - 39 2.05e-07 GTAAATATTG ACAGGCTGGGTCAGCA TCAGCGTTAG chr12:54347245-54347745 + 64 2.05e-07 GAAAGAAATA ATAGCGTGGATAATCA ACCCCTGAAT chr14_GL000225v1_random: - 29 2.37e-07 TAAATGTTAC ATCACCTGGGTGATCA GTGCAGAGAT chrY:11327418-11327918 + 35 2.37e-07 aaattgttac atcacctgggtgatca gtggagatat chr14_GL000225v1_random: - 6 2.37e-07 GAAGAGTTGC ATCACCTGGGTGATCA TTGCA chr14_GL000225v1_random: - 57 2.37e-07 CAAGAGTTGC ATCACCTGGGTGATCA GTGCAGATAT chr14_GL000225v1_random: - 56 2.37e-07 CAAGAGTTAC ATCACCTGGGTGATCA GTGCAGAAAT chr18:107005-107505 - 58 2.37e-07 CAAGAGTTAC ATCACCTGGGTGATCA GTGTAGAGAT chr14_GL000225v1_random: + 32 2.37e-07 aacgagttac atcacctgggtgatca gtgcagagat chr14_GL000225v1_random: - 1 2.37e-07 AAAGATTTAC ATCACCTGGGTGATCA chr7:105010008-105010508 + 48 3.14e-07 GTGTCAAGCA CTAGGCTGGGTTATCA ACATAAAGAA chr7:95598883-95599383 - 32 3.14e-07 GCTGGGTAAG CTAGGCTGGGCAATCA ATGTACTTAG chr7:153097778-153098278 + 46 3.58e-07 gaactgttct ataggttgggctatca ggagcctatc chr18:364380-364880 + 54 4.02e-07 AAATGCAGCT CTAGCTTGGGTCATCA ATCTGCTGTA chr13:75771789-75772289 + 41 4.58e-07 gttgcagaaa agagagtgggtgatca aatagtgact chr2:222057647-222058147 + 45 5.83e-07 AATCACATTT ATAGGCTGGTGCATCA GTCCTGGGTC chr6:99347714-99348214 - 72 7.38e-07 CCCATCTCTG AAAGGGTGGGAAATCA TTTAGGTTTG chr8:25003966-25004466 + 58 7.38e-07 agttgaatct gcagggtggagcatca acaaggaggt chr10:31646516-31647016 - 49 9.32e-07 AAACTATCAA ACAAGATGGATAATCA AGCTTGGTAA chr6:28880947-28881447 - 14 9.32e-07 AGGACGAGCA GTTAGATGGGTCATCA GCGGTGAACC chr19:41501316-41501816 - 32 1.04e-06 CTCTGCCAAT ACAGGGTGAATCATCA TCCATCCCTC chr15:34849511-34850011 + 40 1.04e-06 CTAGCTATTG ATAGGTTGAGCAATCA ATATTGAGAT chr4:73740219-73740719 + 31 1.04e-06 GTTTGCCCTG AGGGGATGGGCCATCA GTTGCAAATC chr17:81912634-81913134 + 61 1.15e-06 GCGTGCACAC ACAGGGTGGGGCAGCA GTGGCCCCAG chr7:66015993-66016493 - 57 1.28e-06 TGATAATTTT AACATCTGGGTCATCA TGGGCTTGGC chr10:69005626-69006126 + 39 1.28e-06 CTACCATCCT ATAGAGTGGGCTATCA ATGCTGCTAC chr7:81716140-81716640 - 66 1.28e-06 AGTATTAGTG AGGACCTGGGTAATCA GTCTGTCTCA chr17:38825277-38825777 - 26 1.28e-06 GTTTCAACAG AGAGTCTGGGACATCA GGCAACGTGG chr6:170280345-170280845 + 40 1.58e-06 CAAGGACTCA GCAGAGTGGGCAATCA CCTAGGCGCG chrX:129933644-129934144 + 64 1.75e-06 ATGATACCCA AAGGGATGGGCCATCA ATGCTTTTTG chr7:101941959-101942459 + 49 2.13e-06 CCCAAAGCTA ACAGGGTGGAGTATCA TAGCCAGGAC chr1:157044254-157044754 - 28 2.13e-06 ACTGGTAGAA GTAGAGTGGAGCATCA GTTACCAGGG chr7:92674871-92675371 - 80 2.13e-06 GTTTT TTAGGATGGGTAATCA ATCAGAAACC chr22:30017315-30017815 + 41 2.36e-06 TTTTGTGCCA GCAGGATGGACAATCA CCATCTAACA chr2:61288007-61288507 - 22 2.84e-06 ACATTAGGGA AGTGGTTGGGTTATCA GGAACTTAGA chr19:46793107-46793607 - 53 3.40e-06 ATAAATATTG GCCAGATGAGTCATCA CAACGATCCC chr5:32507999-32508499 + 70 3.40e-06 CTGAGGCTGA GTAGGATGGAGTATCA GGAAAGGCTT chr6:33418277-33418777 + 16 3.74e-06 GCGTCAGGCT GTGGAGTGGGGAATCA TCCTTAAACC chr5:14268130-14268630 - 44 4.09e-06 AGAGAGCTGT GTGACCTGAGTCATCA TTCCAAAGCA chr15:82571521-82572021 + 39 4.47e-06 CGTCTGCATT ACAGACTGGGCCAGCA TGTGATCAGG chr8:36573695-36574195 + 81 4.87e-06 caagcacaag ctcacatgggtgatca ccta chr14:34459884-34460384 - 40 5.30e-06 AAACTATCTG ATAGTTTGGAACATCA ATTTGAGATT chr16:19517270-19517770 + 9 5.77e-06 GATGTTTA ACTATATGGGTCATCA ATGGCTTATG chr10:77162540-77163040 - 29 6.27e-06 TTTCATATTT ACAGACTGGAAAATCA ATGGAGATGG chr17:1115023-1115523 - 42 6.27e-06 TCAACAGTGA GATGGGTGAGTCATCA GCTGGGGCCC chr8:120827449-120827949 - 58 6.27e-06 TTCTTCCACT GTCAGGTGAATAATCA CAGTGGCCTG chr16:78404545-78405045 - 47 6.81e-06 GGGACATTTA ATAAAATGGACAATCA ACTTTAAGTG chr17:46121314-46121814 - 30 7.37e-06 CAATGCAGTG ATAAATAGGGTCATCA GGGAAAAAGG chr3:197958196-197958696 + 65 7.37e-06 GGTGCATTTA CAAAGTTGGGGAATCA GGAGATGGTT chr14_GL000225v1_random: - 24 8.01e-06 CAAGAGTTAC ATCACCTAGGTGATCA GTGCAGAGAT chr10:133764511-13376501 + 20 8.67e-06 caagagttac atcacctgggtcataa gggcagagat chr6:31546478-31546978 - 13 9.38e-06 ACTCGGTGCA GGAGGCTGAGTGAGCA GGGGAGCACT chr19:56368194-56368694 + 47 1.01e-05 AGCGCCACGC GGAGGCTGGGCCATTA TGAGGTTTGT chr10:133689862-13369036 + 50 1.09e-05 caagagttac atcatctggttgatca gtaaagagat chr5:142401566-142402066 - 59 1.27e-05 TGTTATTTAT GAGAGTTGGATAATCA TGAGTGGTTT chr1:150656998-150657498 - 77 1.37e-05 ATTGCATT AGCAGCTAGGCAATCA GCCATTTGAT chr1:119646520-119647020 + 5 1.47e-05 GTAA ACAGTTGGGGGCATCA ACAAAAAATC chr17:46742759-46743259 - 66 1.59e-05 AGGACTCATG GCAGCGTGGGGCCTCA GGGAGAGGCA chr6:82170347-82170847 - 30 1.59e-05 TAGTTTGGAA GAGGGTTGGATTATCA TTACCTTTAC chr10:121216745-12121724 + 48 1.70e-05 GCTGATGTGT GTCGCTGGGGCAATCA ATTCAAGATG chr19:33473077-33473577 + 29 1.83e-05 AGACACACCG AGAATTTAGGTCATCA TCTACGTATC chr15:70220368-70220868 + 67 1.83e-05 tgcctattct atagcgggggaTATCA TGAATGCTGC chr9:135468731-135469231 - 44 2.10e-05 TCTGGGTGGT GCCGGCTGATCCATCA AGTGCAGGAT chr6:6467240-6467740 - 65 2.41e-05 GGGTGTCTGA AGTGGGTGATTCATCA GGGAGCCACA chr3:171281209-171281709 + 28 2.58e-05 gctgctattt atcagctgtgaaatca tgagcaagct chr1:211037006-211037506 + 18 2.58e-05 tgagtcatgc aaggggtgagtaagca gagaagctgg chr12:95554518-95555018 + 15 2.58e-05 TTCATGTGTA AGAGCTAGGATGATCA ACCTGCTTTT chr16:24723658-24724158 + 19 3.35e-05 tacagttctt gatgtgtgagtaatca attcatcact chr9:3410429-3410929 + 38 4.05e-05 GCATGAAATG CTCGTAAGGGTAATCA GTTTTAGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGGSTGGGTMATCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:48285704-48286204 2.2e-10 29_[-2]_55 chr7:103100300-103100800 4.4e-10 47_[-2]_37 chr17:41860481-41860981 3.1e-09 43_[-2]_41 chr3:168883091-168883591 3.1e-09 48_[+2]_36 chr21:25709805-25710305 4.3e-09 61_[-2]_23 chr17:80639564-80640064 8.3e-09 62_[+2]_22 chr17:36133558-36134058 1.4e-08 45_[-2]_39 chr9:127074607-127075107 2.4e-08 24_[-2]_60 chr5:138306952-138307452 3e-08 36_[+2]_48 chr2:227716473-227716973 3.5e-08 32_[+2]_52 chr14_GL000225v1_random: 6e-08 17_[-2]_67 chr10:22318698-22319198 7.2e-08 65_[-2]_19 chr12:93821951-93822451 8.5e-08 40_[-2]_44 chr14:54569383-54569883 1e-07 36_[-2]_48 chr2:169569890-169570390 1.4e-07 60_[+2]_24 chr3:171584915-171585415 1.4e-07 21_[-2]_63 chr4:78213187-78213687 1.4e-07 55_[+2]_29 chr14_GL000225v1_random: 1.4e-07 32_[-2]_52 chr3:50238472-50238972 1.5e-07 28_[-2]_56 chr11:123408586-12340908 2e-07 38_[-2]_46 chr12:54347245-54347745 2e-07 63_[+2]_21 chr14_GL000225v1_random: 2.4e-07 28_[-2]_56 chrY:11327418-11327918 2.4e-07 34_[+2]_50 chr14_GL000225v1_random: 2.4e-07 5_[-2]_79 chr14_GL000225v1_random: 2.4e-07 56_[-2]_28 chr14_GL000225v1_random: 2.4e-07 55_[-2]_29 chr18:107005-107505 2.4e-07 57_[-2]_27 chr14_GL000225v1_random: 2.4e-07 31_[+2]_53 chr14_GL000225v1_random: 2.4e-07 [-2]_84 chr7:105010008-105010508 3.1e-07 47_[+2]_37 chr7:95598883-95599383 3.1e-07 31_[-2]_53 chr7:153097778-153098278 3.6e-07 45_[+2]_39 chr18:364380-364880 4e-07 53_[+2]_31 chr13:75771789-75772289 4.6e-07 40_[+2]_44 chr2:222057647-222058147 5.8e-07 44_[+2]_40 chr6:99347714-99348214 7.4e-07 71_[-2]_13 chr8:25003966-25004466 7.4e-07 57_[+2]_27 chr10:31646516-31647016 9.3e-07 48_[-2]_36 chr6:28880947-28881447 9.3e-07 13_[-2]_71 chr19:41501316-41501816 1e-06 31_[-2]_53 chr15:34849511-34850011 1e-06 39_[+2]_45 chr4:73740219-73740719 1e-06 30_[+2]_54 chr17:81912634-81913134 1.2e-06 60_[+2]_24 chr7:66015993-66016493 1.3e-06 56_[-2]_28 chr10:69005626-69006126 1.3e-06 38_[+2]_46 chr7:81716140-81716640 1.3e-06 65_[-2]_19 chr17:38825277-38825777 1.3e-06 25_[-2]_59 chr6:170280345-170280845 1.6e-06 39_[+2]_45 chrX:129933644-129934144 1.7e-06 63_[+2]_21 chr7:101941959-101942459 2.1e-06 48_[+2]_36 chr1:157044254-157044754 2.1e-06 27_[-2]_57 chr7:92674871-92675371 2.1e-06 79_[-2]_5 chr22:30017315-30017815 2.4e-06 40_[+2]_44 chr2:61288007-61288507 2.8e-06 21_[-2]_63 chr19:46793107-46793607 3.4e-06 52_[-2]_32 chr5:32507999-32508499 3.4e-06 69_[+2]_15 chr6:33418277-33418777 3.7e-06 15_[+2]_69 chr5:14268130-14268630 4.1e-06 43_[-2]_41 chr15:82571521-82572021 4.5e-06 38_[+2]_46 chr8:36573695-36574195 4.9e-06 80_[+2]_4 chr14:34459884-34460384 5.3e-06 39_[-2]_45 chr16:19517270-19517770 5.8e-06 8_[+2]_76 chr10:77162540-77163040 6.3e-06 28_[-2]_56 chr17:1115023-1115523 6.3e-06 41_[-2]_43 chr8:120827449-120827949 6.3e-06 57_[-2]_27 chr16:78404545-78405045 6.8e-06 46_[-2]_38 chr17:46121314-46121814 7.4e-06 29_[-2]_55 chr3:197958196-197958696 7.4e-06 64_[+2]_20 chr14_GL000225v1_random: 8e-06 23_[-2]_61 chr10:133764511-13376501 8.7e-06 19_[+2]_65 chr6:31546478-31546978 9.4e-06 12_[-2]_72 chr19:56368194-56368694 1e-05 46_[+2]_38 chr10:133689862-13369036 1.1e-05 49_[+2]_35 chr5:142401566-142402066 1.3e-05 58_[-2]_26 chr1:150656998-150657498 1.4e-05 76_[-2]_8 chr1:119646520-119647020 1.5e-05 4_[+2]_80 chr17:46742759-46743259 1.6e-05 65_[-2]_19 chr6:82170347-82170847 1.6e-05 29_[-2]_55 chr10:121216745-12121724 1.7e-05 47_[+2]_37 chr19:33473077-33473577 1.8e-05 28_[+2]_56 chr15:70220368-70220868 1.8e-05 66_[+2]_18 chr9:135468731-135469231 2.1e-05 43_[-2]_41 chr6:6467240-6467740 2.4e-05 64_[-2]_20 chr3:171281209-171281709 2.6e-05 27_[+2]_57 chr1:211037006-211037506 2.6e-05 17_[+2]_67 chr12:95554518-95555018 2.6e-05 14_[+2]_70 chr16:24723658-24724158 3.3e-05 18_[+2]_66 chr9:3410429-3410929 4e-05 37_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGGSTGGGTMATCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATAGGSTGGGTMATCA width=16 seqs=88 chr10:48285704-48286204 ( 30) ATAGGCTGGGTCATCA 1 chr7:103100300-103100800 ( 48) ATAGGGTGGGTCATCA 1 chr17:41860481-41860981 ( 44) AGAGGCTGGGTCATCA 1 chr3:168883091-168883591 ( 49) GTAGGGTGGGTCATCA 1 chr21:25709805-25710305 ( 62) GTAGGCTGGGTAATCA 1 chr17:80639564-80640064 ( 63) ATAGGATGGGTAATCA 1 chr17:36133558-36134058 ( 46) ACAGGTTGGGTCATCA 1 chr9:127074607-127075107 ( 25) ATAGGGTGGGGAATCA 1 chr5:138306952-138307452 ( 37) ATAGGATGGGCCATCA 1 chr2:227716473-227716973 ( 33) GCAGGGTGGGTAATCA 1 chr14_GL000225v1_random: ( 18) ATCAGCTGGGTGATCA 1 chr10:22318698-22319198 ( 66) ATAGGATGGGGAATCA 1 chr12:93821951-93822451 ( 41) GTAGGATGGGGCATCA 1 chr14:54569383-54569883 ( 37) AGAGGGTGGATCATCA 1 chr2:169569890-169570390 ( 61) GAAGGTTGGGTCATCA 1 chr3:171584915-171585415 ( 22) ATAGGGTGGAGCATCA 1 chr4:78213187-78213687 ( 56) AGAGGCTGGGACATCA 1 chr14_GL000225v1_random: ( 33) ATCACCTGGGTAATCA 1 chr3:50238472-50238972 ( 29) GCAGACTGGGTCATCA 1 chr11:123408586-12340908 ( 39) ACAGGCTGGGTCAGCA 1 chr12:54347245-54347745 ( 64) ATAGCGTGGATAATCA 1 chr14_GL000225v1_random: ( 29) ATCACCTGGGTGATCA 1 chrY:11327418-11327918 ( 35) ATCACCTGGGTGATCA 1 chr14_GL000225v1_random: ( 6) ATCACCTGGGTGATCA 1 chr14_GL000225v1_random: ( 57) ATCACCTGGGTGATCA 1 chr14_GL000225v1_random: ( 56) ATCACCTGGGTGATCA 1 chr18:107005-107505 ( 58) ATCACCTGGGTGATCA 1 chr14_GL000225v1_random: ( 32) ATCACCTGGGTGATCA 1 chr14_GL000225v1_random: ( 1) ATCACCTGGGTGATCA 1 chr7:105010008-105010508 ( 48) CTAGGCTGGGTTATCA 1 chr7:95598883-95599383 ( 32) CTAGGCTGGGCAATCA 1 chr7:153097778-153098278 ( 46) ATAGGTTGGGCTATCA 1 chr18:364380-364880 ( 54) CTAGCTTGGGTCATCA 1 chr13:75771789-75772289 ( 41) AGAGAGTGGGTGATCA 1 chr2:222057647-222058147 ( 45) ATAGGCTGGTGCATCA 1 chr6:99347714-99348214 ( 72) AAAGGGTGGGAAATCA 1 chr8:25003966-25004466 ( 58) GCAGGGTGGAGCATCA 1 chr10:31646516-31647016 ( 49) ACAAGATGGATAATCA 1 chr6:28880947-28881447 ( 14) GTTAGATGGGTCATCA 1 chr19:41501316-41501816 ( 32) ACAGGGTGAATCATCA 1 chr15:34849511-34850011 ( 40) ATAGGTTGAGCAATCA 1 chr4:73740219-73740719 ( 31) AGGGGATGGGCCATCA 1 chr17:81912634-81913134 ( 61) ACAGGGTGGGGCAGCA 1 chr7:66015993-66016493 ( 57) AACATCTGGGTCATCA 1 chr10:69005626-69006126 ( 39) ATAGAGTGGGCTATCA 1 chr7:81716140-81716640 ( 66) AGGACCTGGGTAATCA 1 chr17:38825277-38825777 ( 26) AGAGTCTGGGACATCA 1 chr6:170280345-170280845 ( 40) GCAGAGTGGGCAATCA 1 chrX:129933644-129934144 ( 64) AAGGGATGGGCCATCA 1 chr7:101941959-101942459 ( 49) ACAGGGTGGAGTATCA 1 chr1:157044254-157044754 ( 28) GTAGAGTGGAGCATCA 1 chr7:92674871-92675371 ( 80) TTAGGATGGGTAATCA 1 chr22:30017315-30017815 ( 41) GCAGGATGGACAATCA 1 chr2:61288007-61288507 ( 22) AGTGGTTGGGTTATCA 1 chr19:46793107-46793607 ( 53) GCCAGATGAGTCATCA 1 chr5:32507999-32508499 ( 70) GTAGGATGGAGTATCA 1 chr6:33418277-33418777 ( 16) GTGGAGTGGGGAATCA 1 chr5:14268130-14268630 ( 44) GTGACCTGAGTCATCA 1 chr15:82571521-82572021 ( 39) ACAGACTGGGCCAGCA 1 chr8:36573695-36574195 ( 81) CTCACATGGGTGATCA 1 chr14:34459884-34460384 ( 40) ATAGTTTGGAACATCA 1 chr16:19517270-19517770 ( 9) ACTATATGGGTCATCA 1 chr10:77162540-77163040 ( 29) ACAGACTGGAAAATCA 1 chr17:1115023-1115523 ( 42) GATGGGTGAGTCATCA 1 chr8:120827449-120827949 ( 58) GTCAGGTGAATAATCA 1 chr16:78404545-78405045 ( 47) ATAAAATGGACAATCA 1 chr17:46121314-46121814 ( 30) ATAAATAGGGTCATCA 1 chr3:197958196-197958696 ( 65) CAAAGTTGGGGAATCA 1 chr14_GL000225v1_random: ( 24) ATCACCTAGGTGATCA 1 chr10:133764511-13376501 ( 20) ATCACCTGGGTCATAA 1 chr6:31546478-31546978 ( 13) GGAGGCTGAGTGAGCA 1 chr19:56368194-56368694 ( 47) GGAGGCTGGGCCATTA 1 chr10:133689862-13369036 ( 50) ATCATCTGGTTGATCA 1 chr5:142401566-142402066 ( 59) GAGAGTTGGATAATCA 1 chr1:150656998-150657498 ( 77) AGCAGCTAGGCAATCA 1 chr1:119646520-119647020 ( 5) ACAGTTGGGGGCATCA 1 chr17:46742759-46743259 ( 66) GCAGCGTGGGGCCTCA 1 chr6:82170347-82170847 ( 30) GAGGGTTGGATTATCA 1 chr10:121216745-12121724 ( 48) GTCGCTGGGGCAATCA 1 chr19:33473077-33473577 ( 29) AGAATTTAGGTCATCA 1 chr15:70220368-70220868 ( 67) ATAGCGGGGGATATCA 1 chr9:135468731-135469231 ( 44) GCCGGCTGATCCATCA 1 chr6:6467240-6467740 ( 65) AGTGGGTGATTCATCA 1 chr3:171281209-171281709 ( 28) ATCAGCTGTGAAATCA 1 chr1:211037006-211037506 ( 18) AAGGGGTGAGTAAGCA 1 chr12:95554518-95555018 ( 15) AGAGCTAGGATGATCA 1 chr16:24723658-24724158 ( 19) GATGTGTGAGTAATCA 1 chr9:3410429-3410929 ( 38) CTCGTAAGGGTAATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGGSTGGGTMATCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50915 bayes= 10.7089 E= 2.2e-099 122 -174 32 -458 -126 -15 -52 94 112 14 -132 -200 27 -1310 156 -1310 -126 0 129 -141 -58 72 26 -68 -300 -1310 -274 177 -300 -1310 209 -1310 -112 -1310 192 -458 -50 -1310 174 -258 -178 -42 -52 112 17 92 -42 -158 186 -432 -1310 -1310 -1310 -1310 -200 179 -458 210 -1310 -458 188 -1310 -1310 -1310 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGGSTGGGTMATCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 88 E= 2.2e-099 0.636364 0.068182 0.284091 0.011364 0.113636 0.204545 0.159091 0.522727 0.590909 0.250000 0.090909 0.068182 0.329545 0.000000 0.670455 0.000000 0.113636 0.227273 0.556818 0.102273 0.181818 0.375000 0.272727 0.170455 0.034091 0.000000 0.034091 0.931818 0.034091 0.000000 0.965909 0.000000 0.125000 0.000000 0.863636 0.011364 0.193182 0.000000 0.761364 0.045455 0.079545 0.170455 0.159091 0.590909 0.306818 0.431818 0.170455 0.090909 0.988636 0.011364 0.000000 0.000000 0.000000 0.000000 0.056818 0.943182 0.011364 0.977273 0.000000 0.011364 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGGSTGGGTMATCA MEME-2 regular expression -------------------------------------------------------------------------------- [AG][TC][AC][GA][GC][CG]TGGGT[CA]ATCA -------------------------------------------------------------------------------- Time 683.64 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGCWAAGCATGCGCTCTACCACTGAGCTA MEME-3 width = 30 sites = 10 llr = 388 E-value = 1.4e-072 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGCWAAGCATGCGCTCTACCACTGAGCTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:::5aa::a:1::::::a::9:::a:::a pos.-specific C :::9::::a:3:9:a:a::aa:a::::a:: probability G ::a:2::a:::9:a:::::::1::a:a::: matrix T :a:13:::::7:1::a:a:::::a::::a: bits 2.1 * ** ** * ** * * ** 1.9 *** ***** ******** ******** 1.7 **** ***** ********** ******** 1.5 **** ***** ******************* Relative 1.3 **** ***** ******************* Entropy 1.1 **** ************************* (56.0 bits) 0.9 **** ************************* 0.6 **** ************************* 0.4 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel ATGCAAAGCATGCGCTCTACCACTGAGCTA consensus T C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGCWAAGCATGCGCTCTACCACTGAGCTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr6:28817006-28817506 + 64 7.72e-19 ggcctcatac atgcaaagcatgcgctctaccactgagcta caccccc chr6:28643245-28643745 - 7 7.72e-19 GACCTCATAC ATGCAAAGCATGCGCTCTACCACTGAGCTA CATCCC chr6:28789549-28790049 + 56 7.72e-19 gacctcatac atgcaaagcatgcgctctaccactgagcta cacccccTTC chr6:28802597-28803097 + 37 7.72e-19 ggcctcatac atgcaaagcatgcgctctaccactgagcta cacccccTTA chr6:28673658-28674158 + 13 2.84e-18 ggcctcatac atgcgaagcatgcgctctaccactgagcta catccccTGG chr6:28719471-28719971 - 40 3.48e-18 GGCCTCGTGC ATGCTAAGCACGCGCTCTACCACTGAGCTA CACCCCCGTT chr6:28729106-28729606 - 16 4.03e-18 GGCCTCGTAC ATGCGAAGCACGCGCTCTACCACTGAGCTA CACCCCCTGA chr6:28758178-28758678 + 21 7.44e-18 ggcctcacac atgcaaagcatgtgctctaccactgagcta cacccccCTC chr6:28811869-28812369 + 38 1.71e-17 gacctcgtgc atgctaagcacgcgctctaccgctgagcta tacccccTCT chr6:28735227-28735727 + 37 3.69e-17 agcctcatga atgttaagcatacgctctaccactgagcta cacccccACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGCWAAGCATGCGCTCTACCACTGAGCTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:28817006-28817506 7.7e-19 63_[+3]_7 chr6:28643245-28643745 7.7e-19 6_[-3]_64 chr6:28789549-28790049 7.7e-19 55_[+3]_15 chr6:28802597-28803097 7.7e-19 36_[+3]_34 chr6:28673658-28674158 2.8e-18 12_[+3]_58 chr6:28719471-28719971 3.5e-18 39_[-3]_31 chr6:28729106-28729606 4e-18 15_[-3]_55 chr6:28758178-28758678 7.4e-18 20_[+3]_50 chr6:28811869-28812369 1.7e-17 37_[+3]_33 chr6:28735227-28735727 3.7e-17 36_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGCWAAGCATGCGCTCTACCACTGAGCTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGCWAAGCATGCGCTCTACCACTGAGCTA width=30 seqs=10 chr6:28817006-28817506 ( 64) ATGCAAAGCATGCGCTCTACCACTGAGCTA 1 chr6:28643245-28643745 ( 7) ATGCAAAGCATGCGCTCTACCACTGAGCTA 1 chr6:28789549-28790049 ( 56) ATGCAAAGCATGCGCTCTACCACTGAGCTA 1 chr6:28802597-28803097 ( 37) ATGCAAAGCATGCGCTCTACCACTGAGCTA 1 chr6:28673658-28674158 ( 13) ATGCGAAGCATGCGCTCTACCACTGAGCTA 1 chr6:28719471-28719971 ( 40) ATGCTAAGCACGCGCTCTACCACTGAGCTA 1 chr6:28729106-28729606 ( 16) ATGCGAAGCACGCGCTCTACCACTGAGCTA 1 chr6:28758178-28758678 ( 21) ATGCAAAGCATGTGCTCTACCACTGAGCTA 1 chr6:28811869-28812369 ( 38) ATGCTAAGCACGCGCTCTACCGCTGAGCTA 1 chr6:28735227-28735727 ( 37) ATGTTAAGCATACGCTCTACCACTGAGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGCWAAGCATGCGCTCTACCACTGAGCTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42529 bayes= 12.3055 E= 1.4e-072 187 -997 -997 -997 -997 -997 -997 187 -997 -997 213 -997 -997 198 -997 -144 88 -997 -19 14 187 -997 -997 -997 187 -997 -997 -997 -997 -997 213 -997 -997 213 -997 -997 187 -997 -997 -997 -997 40 -997 136 -144 -997 198 -997 -997 198 -997 -144 -997 -997 213 -997 -997 213 -997 -997 -997 -997 -997 187 -997 213 -997 -997 -997 -997 -997 187 187 -997 -997 -997 -997 213 -997 -997 -997 213 -997 -997 172 -997 -118 -997 -997 213 -997 -997 -997 -997 -997 187 -997 -997 213 -997 187 -997 -997 -997 -997 -997 213 -997 -997 213 -997 -997 -997 -997 -997 187 187 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGCWAAGCATGCGCTCTACCACTGAGCTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 10 E= 1.4e-072 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.500000 0.000000 0.200000 0.300000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.300000 0.000000 0.700000 0.100000 0.000000 0.900000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGCWAAGCATGCGCTCTACCACTGAGCTA MEME-3 regular expression -------------------------------------------------------------------------------- ATGC[ATG]AAGCA[TC]GCGCTCTACCACTGAGCTA -------------------------------------------------------------------------------- Time 971.67 secs. ******************************************************************************** ******************************************************************************** MOTIF MTGAGTCAY MEME-4 width = 9 sites = 103 llr = 986 E-value = 1.2e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTGAGTCAY MEME-4 Description -------------------------------------------------------------------------------- Simplified A 5::a:::a: pos.-specific C 3:::::a:3 probability G 2:9:a:::2 matrix T 1a1::a::6 bits 2.1 * 1.9 * ** ** 1.7 * ***** 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (13.8 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ********* 0.0 --------- Multilevel ATGAGTCAT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCAY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr8:7109180-7109680 - 75 4.80e-06 GGAATGGAAG ATGAGTCAT GCCTTCAGCA chr17:45320842-45321342 + 42 4.80e-06 AAAGTGGCTG ATGAGTCAT CTGAATGTGG chr16:10080366-10080866 + 10 4.80e-06 CACAGGGAA ATGAGTCAT GCAGAGGCTG chr19:43752956-43753456 - 63 4.80e-06 TCGGTATGGA ATGAGTCAT TTTCCCTAAG chr7:66015993-66016493 - 11 4.80e-06 TCCCTGGAGA ATGAGTCAT ATTTTCGTGG chr5:113489280-113489780 - 50 4.80e-06 GGACAGAATA ATGAGTCAT TCACGAAACC chr22:30806358-30806858 - 33 4.80e-06 ACCTCCATGG ATGAGTCAT TTCCTCTCTG chr7:131895587-131896087 + 20 4.80e-06 CCCTTTTTCC ATGAGTCAT TGCCATGAAT chr8:140796903-140797403 + 30 4.80e-06 TGACACAATC ATGAGTCAT TCTGGCATTC chr5:149586881-149587381 + 72 4.80e-06 catggctgaa atgagtcat gccatcattt chr2:12965346-12965846 - 49 4.80e-06 TCTAGGAAAG ATGAGTCAT GCAGTCTGCT chr17:45487657-45488157 + 59 4.80e-06 GTACCAATTG ATGAGTCAT GTTTTTTCAA chr3:71982587-71983087 - 56 4.80e-06 ACATTTGACT ATGAGTCAT CAAGTCACCA chr3:184523784-184524284 - 43 4.80e-06 CCAGCAGCAG ATGAGTCAT TGTAGTAACA chr17:46279669-46280169 + 52 4.80e-06 tatctaatgc atgagtcat tgtcttgccc chr13:39148366-39148866 + 74 4.80e-06 GCTCAAATCA ATGAGTCAT TGGCCATTTG chr1:33433699-33434199 - 54 4.80e-06 CAATAAGACC ATGAGTCAT TTGACCCTCT chr17:36133558-36134058 - 8 1.28e-05 GAATAAAAAT CTGAGTCAT TCCACCA chr1:115668990-115669490 - 35 1.28e-05 TCCCAGAGTG CTGAGTCAT ACCTGCTTTT chr5:61328038-61328538 + 86 1.28e-05 GTGATGTGAT ATGAGTCAC TGCATA chr5:62233352-62233852 - 43 1.28e-05 AGAGGGCTTA CTGAGTCAT CCTGTTTGTC chr10:31646516-31647016 + 5 1.28e-05 ttat atgagtcac ccttgtcttt chr6:30154665-30155165 - 84 1.28e-05 GACTGTAA ATGAGTCAC CAGTGCCCTG chr1:211037006-211037506 + 7 1.28e-05 ctcacc ctgagtcat gcaaggggtg chr19:28847430-28847930 + 88 1.28e-05 tctctctcCT ATGAGTCAC TCTT chr5:90021134-90021634 + 78 1.28e-05 AGTCAAAACC ATGAGTCAC AGTTGATTCA chr4:73740219-73740719 - 12 1.28e-05 CAGGGCAAAC CTGAGTCAT CACACTTCCT chr1:41492992-41493492 - 15 1.28e-05 GCCTCCCACC CTGAGTCAT TGCTCACCTC chr13:35891803-35892303 + 64 1.28e-05 TGGGTACCAG CTGAGTCAT ATCATAGGGC chr6:69865052-69865552 - 47 1.28e-05 AGGATATTGC ATGAGTCAC GCTACTCAAA chr5:142821971-142822471 - 90 1.28e-05 GT CTGAGTCAT CAGGCAGCAC chr19:39032951-39033451 - 51 1.28e-05 GATTACGGGC ATGAGTCAC CGCACCCAGC chr19:47253338-47253838 + 49 1.28e-05 gattacaggc atgagtcac cgcacTGGCC chr16:15502230-15502730 - 60 1.28e-05 GTTGCTTTTA ATGAGTCAC CGTTTCCCAA chr17:35254304-35254804 + 61 1.28e-05 GTAATCATGC ATGAGTCAC TGTTTTTCTT chr10:102426723-10242722 + 20 1.28e-05 gattacagcc atgagtcac cgtgcccggc chr6:27633156-27633656 - 19 1.28e-05 CAGCTGCTTG ATGAGTCAC AGGTTCACAT chr16:21511440-21511940 - 14 1.28e-05 TCGATCCCTG CTGAGTCAT CCTGACCTCG chrX:154541848-154542348 + 41 1.28e-05 CCGGGGGCTC ATGAGTCAC CGGGGCTTTG chr7:99751548-99752048 + 50 1.69e-05 GGGTGGAGGA GTGAGTCAT AGGTGGGAGG chr22:30017315-30017815 - 69 1.69e-05 GCCTAAGAAA GTGAGTCAT TCTGTTAGAT chr7:99699102-99699602 + 36 1.69e-05 GGGTGGAGGA GTGAGTCAT AGGAGGGAGG chr5:140190171-140190671 + 77 1.69e-05 gagtgactgg gtgagtcat ttctttggtg chr10:95485285-95485785 + 53 1.69e-05 AAAACATGGA GTGAGTCAT CTCTATGTTG chr22:38924319-38924819 - 31 1.69e-05 TATTTACTTT GTGAGTCAT GTGCTAGAAA chr10:78798989-78799489 + 36 1.69e-05 cagagacttt gtgagtcat acaccattaa chr15:65954202-65954702 + 41 1.69e-05 GCATACAGGA GTGAGTCAT GCTGGTTGAG chr19:39684181-39684681 - 65 1.69e-05 TTTCACTGGA GTGAGTCAT CTACAATGAA chr6:31777110-31777610 - 51 2.43e-05 TGTGCCAGGC CTGAGTCAC GCTGCTTACT chr1:199490764-199491264 + 56 2.43e-05 cagaagctgc atgagtcag taattgacag chr6:43570899-43571399 + 37 2.43e-05 GTTCTTCAGC CTGAGTCAC TTGTCCTGCA chr14:101962443-10196294 - 85 2.43e-05 CTGCACC ATGAGTCAG CACCAGACTG chr1:225425308-225425808 + 18 2.43e-05 TCAGGCCTGG CTGAGTCAC CCGAGGGGCA chr8:106045566-106046066 + 85 2.43e-05 ctaaggtctt ctgagtcAC TCTGAAG chr7:18576104-18576604 - 87 2.43e-05 CAGGG ATGAGTCAG CCCGACTGGC chr14:94342258-94342758 + 38 2.43e-05 CCTCTTGCAC ATGAGTCAG ACTCTGTCAC chr13:75771789-75772289 - 61 2.43e-05 ATTTGCTTTT CTGAGTCAC TATTTGATCA chr1:156661273-156661773 - 40 2.43e-05 GTGCAGGACG CTGAGTCAC CCGTGGACCA chr15:65796535-65797035 + 22 2.43e-05 TGCAGGAAAT ATGAGTCAG CTTTTCTCAT chr17:45948981-45949481 + 3 2.43e-05 TG CTGAGTCAC CGCGGGCGCC chr3:125917095-125917595 + 66 2.43e-05 GCTCACTGGG ATGAGTCAG TTTGGATATA chr10:43353399-43353899 + 76 2.43e-05 AAACATTGCT CTGAGTCAC TTCTCCTTCT chr8:27617000-27617500 + 18 2.43e-05 ttatcagatg ctgagtcac tgggctgatt chr19:36070361-36070861 - 34 2.76e-05 GATCTCCAGA GTGAGTCAC AAAGGCAGGC chr17:45371624-45372124 - 29 2.76e-05 TGCCTGCACC GTGAGTCAC CCGGACGGCC chr3:198071854-198072354 + 59 2.76e-05 aactctgtgt gtgagtcac cacaaagagt chr8:28624917-28625417 - 9 2.76e-05 TGAGTAATTG GTGAGTCAC TCACCTGT chr2:160352329-160352829 + 80 2.76e-05 ctttgtataa gtgagtcac cgattaggaa chr8:70180543-70181043 - 74 3.10e-05 ACTTAGGAGG CTGAGTCAG GAGGATTGCT chr16:2915982-2916482 + 62 3.10e-05 actcaggaag ctgagtcag gataattaac chr22:29979158-29979658 + 33 3.10e-05 actcaggagg ctgagtcag gagaatggca chr2:191899385-191899885 + 72 3.10e-05 GAAAATGCCT CTGAGTCAG GATGAATATG chr16:15021454-15021954 - 30 3.44e-05 TTATTAGCCT GTGAGTCAG CAGCAGGACA chr17:1080693-1081193 + 60 3.44e-05 ACGTCATCGA GTGAGTCAG GATGAGAAGC chr6:84926718-84927218 - 4 3.44e-05 TTTTCACAGC GTGAGTCAG CCT chr16:15590845-15591345 + 71 3.44e-05 acttgaaaca gtgagtcag atcctgttat chr1:26531015-26531515 - 70 3.44e-05 ACCTCAGAGG GTGAGTCAG CGAGAGAACC chr15:74790562-74791062 + 25 3.44e-05 ccatgcagac gtgagtcag accctcactt chr7:44735421-44735921 - 9 4.49e-05 GTGTCTTTTT ATTAGTCAT TCTAGTAG chr5:141521105-141521605 + 38 4.49e-05 GGAGATAAAG TTGAGTCAT TAAAACCACA chr4:37561846-37562346 - 92 4.49e-05 . TTGAGTCAT TAGATGCTTA chr6:106620898-106621398 - 11 4.49e-05 GAGAGGATGG ATTAGTCAT CAGTGGAGAC chr6:111809195-111809695 + 56 4.49e-05 AGTCCTCTGG ATTAGTCAT GGTGCTTCGT chr12:26112743-26113243 - 48 4.49e-05 ATTTACGACA ATTAGTCAT CCTCTCCCTC chr6:141326331-141326831 - 89 4.49e-05 CCT ATTAGTCAT CCGCATCATC chr6:142323337-142323837 + 12 4.49e-05 gtctcataag attagtcat gcattgctta chr16:88782332-88782832 - 56 4.49e-05 TGGTGAGGGT TTGAGTCAT CCTGGGGTGC chr15:72228336-72228836 + 82 4.49e-05 AATTGAAAGG TTGAGTCAT CTTCCCCACA chr3:48989557-48990057 + 60 4.49e-05 TGCCGCACTG TTGAGTCAT CTCAGCGCTG chr17:4945157-4945657 - 30 4.49e-05 GCAGGGCTAG TTGAGTCAT CCTTGTGGGT chr7:129332673-129333173 + 84 5.85e-05 CTATAGTTGA CTTAGTCAT TCTTCCCA chr8:37229054-37229554 - 22 5.85e-05 AATGAACTTC ATTAGTCAC TAACCCAAGA chr7:101941959-101942459 - 14 5.85e-05 CTTTTTCTCT CTTAGTCAT GCTTTTCTGG chr8:8288462-8288962 - 42 5.85e-05 GGGAATGAGT ATTAGTCAC GACTTGGTAT chr19:41595171-41595671 + 46 5.85e-05 GTGCCCTTTT CTTAGTCAT GACATCCTCT chr1:119645819-119646319 + 40 5.85e-05 CTCCATGAGC CTTAGTCAT GCTGCTGATG chr6:30769540-30770040 + 60 7.62e-05 CCATGCAGGA CTTAGTCAC CGCTCGTGTC chr1:92940495-92940995 + 61 8.59e-05 acatcaatgt atgaatcat ccagttgctc chr5:69521096-69521596 - 21 8.59e-05 AAATAGGAGA ATGAATCAT CGTATACTCA chr5:125326015-125326515 - 22 8.59e-05 TTGCAGCAAA ATGAATCAT GTAGGGCTGT chr12:110555725-11055622 + 4 8.59e-05 CTG ATGAATCAT TCATTCTTTT chr10:98432288-98432788 - 50 9.47e-05 TAAATAGCAG ATGAGACAT AGCTAGAGGG chr22:36534952-36535452 - 61 9.47e-05 TAAATAGCAG ATGAGACAT AGCTAGAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCAY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:7109180-7109680 4.8e-06 74_[-4]_17 chr17:45320842-45321342 4.8e-06 41_[+4]_50 chr16:10080366-10080866 4.8e-06 9_[+4]_82 chr19:43752956-43753456 4.8e-06 62_[-4]_29 chr7:66015993-66016493 4.8e-06 10_[-4]_81 chr5:113489280-113489780 4.8e-06 49_[-4]_42 chr22:30806358-30806858 4.8e-06 32_[-4]_59 chr7:131895587-131896087 4.8e-06 19_[+4]_72 chr8:140796903-140797403 4.8e-06 29_[+4]_62 chr5:149586881-149587381 4.8e-06 71_[+4]_20 chr2:12965346-12965846 4.8e-06 48_[-4]_43 chr17:45487657-45488157 4.8e-06 58_[+4]_33 chr3:71982587-71983087 4.8e-06 55_[-4]_36 chr3:184523784-184524284 4.8e-06 42_[-4]_49 chr17:46279669-46280169 4.8e-06 51_[+4]_40 chr13:39148366-39148866 4.8e-06 73_[+4]_18 chr1:33433699-33434199 4.8e-06 53_[-4]_38 chr17:36133558-36134058 1.3e-05 7_[-4]_84 chr1:115668990-115669490 1.3e-05 34_[-4]_57 chr5:61328038-61328538 1.3e-05 85_[+4]_6 chr5:62233352-62233852 1.3e-05 42_[-4]_49 chr10:31646516-31647016 1.3e-05 4_[+4]_87 chr6:30154665-30155165 1.3e-05 83_[-4]_8 chr1:211037006-211037506 1.3e-05 6_[+4]_85 chr19:28847430-28847930 1.3e-05 87_[+4]_4 chr5:90021134-90021634 1.3e-05 77_[+4]_14 chr4:73740219-73740719 1.3e-05 11_[-4]_80 chr1:41492992-41493492 1.3e-05 14_[-4]_77 chr13:35891803-35892303 1.3e-05 63_[+4]_28 chr6:69865052-69865552 1.3e-05 46_[-4]_45 chr5:142821971-142822471 1.3e-05 89_[-4]_2 chr19:39032951-39033451 1.3e-05 50_[-4]_41 chr19:47253338-47253838 1.3e-05 48_[+4]_43 chr16:15502230-15502730 1.3e-05 59_[-4]_32 chr17:35254304-35254804 1.3e-05 60_[+4]_31 chr10:102426723-10242722 1.3e-05 19_[+4]_72 chr6:27633156-27633656 1.3e-05 18_[-4]_73 chr16:21511440-21511940 1.3e-05 13_[-4]_78 chrX:154541848-154542348 1.3e-05 40_[+4]_51 chr7:99751548-99752048 1.7e-05 49_[+4]_42 chr22:30017315-30017815 1.7e-05 68_[-4]_23 chr7:99699102-99699602 1.7e-05 35_[+4]_56 chr5:140190171-140190671 1.7e-05 76_[+4]_15 chr10:95485285-95485785 1.7e-05 52_[+4]_39 chr22:38924319-38924819 1.7e-05 30_[-4]_61 chr10:78798989-78799489 1.7e-05 35_[+4]_56 chr15:65954202-65954702 1.7e-05 40_[+4]_51 chr19:39684181-39684681 1.7e-05 64_[-4]_27 chr6:31777110-31777610 2.4e-05 50_[-4]_41 chr1:199490764-199491264 2.4e-05 55_[+4]_36 chr6:43570899-43571399 2.4e-05 36_[+4]_55 chr14:101962443-10196294 2.4e-05 84_[-4]_7 chr1:225425308-225425808 2.4e-05 17_[+4]_74 chr8:106045566-106046066 2.4e-05 84_[+4]_7 chr7:18576104-18576604 2.4e-05 86_[-4]_5 chr14:94342258-94342758 2.4e-05 37_[+4]_54 chr13:75771789-75772289 2.4e-05 60_[-4]_31 chr1:156661273-156661773 2.4e-05 39_[-4]_52 chr15:65796535-65797035 2.4e-05 21_[+4]_70 chr17:45948981-45949481 2.4e-05 2_[+4]_89 chr3:125917095-125917595 2.4e-05 65_[+4]_26 chr10:43353399-43353899 2.4e-05 75_[+4]_16 chr8:27617000-27617500 2.4e-05 17_[+4]_74 chr19:36070361-36070861 2.8e-05 33_[-4]_58 chr17:45371624-45372124 2.8e-05 28_[-4]_63 chr3:198071854-198072354 2.8e-05 58_[+4]_33 chr8:28624917-28625417 2.8e-05 8_[-4]_83 chr2:160352329-160352829 2.8e-05 79_[+4]_12 chr8:70180543-70181043 3.1e-05 73_[-4]_18 chr16:2915982-2916482 3.1e-05 61_[+4]_30 chr22:29979158-29979658 3.1e-05 32_[+4]_59 chr2:191899385-191899885 3.1e-05 71_[+4]_20 chr16:15021454-15021954 3.4e-05 29_[-4]_62 chr17:1080693-1081193 3.4e-05 59_[+4]_32 chr6:84926718-84927218 3.4e-05 3_[-4]_88 chr16:15590845-15591345 3.4e-05 70_[+4]_21 chr1:26531015-26531515 3.4e-05 69_[-4]_22 chr15:74790562-74791062 3.4e-05 24_[+4]_67 chr7:44735421-44735921 4.5e-05 8_[-4]_83 chr5:141521105-141521605 4.5e-05 37_[+4]_54 chr4:37561846-37562346 4.5e-05 91_[-4] chr6:106620898-106621398 4.5e-05 10_[-4]_81 chr6:111809195-111809695 4.5e-05 55_[+4]_36 chr12:26112743-26113243 4.5e-05 47_[-4]_44 chr6:141326331-141326831 4.5e-05 88_[-4]_3 chr6:142323337-142323837 4.5e-05 11_[+4]_80 chr16:88782332-88782832 4.5e-05 55_[-4]_36 chr15:72228336-72228836 4.5e-05 81_[+4]_10 chr3:48989557-48990057 4.5e-05 59_[+4]_32 chr17:4945157-4945657 4.5e-05 29_[-4]_62 chr7:129332673-129333173 5.9e-05 83_[+4]_8 chr8:37229054-37229554 5.9e-05 21_[-4]_70 chr7:101941959-101942459 5.9e-05 13_[-4]_78 chr8:8288462-8288962 5.9e-05 41_[-4]_50 chr19:41595171-41595671 5.9e-05 45_[+4]_46 chr1:119645819-119646319 5.9e-05 39_[+4]_52 chr6:30769540-30770040 7.6e-05 59_[+4]_32 chr1:92940495-92940995 8.6e-05 60_[+4]_31 chr5:69521096-69521596 8.6e-05 20_[-4]_71 chr5:125326015-125326515 8.6e-05 21_[-4]_70 chr12:110555725-11055622 8.6e-05 3_[+4]_88 chr10:98432288-98432788 9.5e-05 49_[-4]_42 chr22:36534952-36535452 9.5e-05 60_[-4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCAY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTGAGTCAY width=9 seqs=103 chr8:7109180-7109680 ( 75) ATGAGTCAT 1 chr17:45320842-45321342 ( 42) ATGAGTCAT 1 chr16:10080366-10080866 ( 10) ATGAGTCAT 1 chr19:43752956-43753456 ( 63) ATGAGTCAT 1 chr7:66015993-66016493 ( 11) ATGAGTCAT 1 chr5:113489280-113489780 ( 50) ATGAGTCAT 1 chr22:30806358-30806858 ( 33) ATGAGTCAT 1 chr7:131895587-131896087 ( 20) ATGAGTCAT 1 chr8:140796903-140797403 ( 30) ATGAGTCAT 1 chr5:149586881-149587381 ( 72) ATGAGTCAT 1 chr2:12965346-12965846 ( 49) ATGAGTCAT 1 chr17:45487657-45488157 ( 59) ATGAGTCAT 1 chr3:71982587-71983087 ( 56) ATGAGTCAT 1 chr3:184523784-184524284 ( 43) ATGAGTCAT 1 chr17:46279669-46280169 ( 52) ATGAGTCAT 1 chr13:39148366-39148866 ( 74) ATGAGTCAT 1 chr1:33433699-33434199 ( 54) ATGAGTCAT 1 chr17:36133558-36134058 ( 8) CTGAGTCAT 1 chr1:115668990-115669490 ( 35) CTGAGTCAT 1 chr5:61328038-61328538 ( 86) ATGAGTCAC 1 chr5:62233352-62233852 ( 43) CTGAGTCAT 1 chr10:31646516-31647016 ( 5) ATGAGTCAC 1 chr6:30154665-30155165 ( 84) ATGAGTCAC 1 chr1:211037006-211037506 ( 7) CTGAGTCAT 1 chr19:28847430-28847930 ( 88) ATGAGTCAC 1 chr5:90021134-90021634 ( 78) ATGAGTCAC 1 chr4:73740219-73740719 ( 12) CTGAGTCAT 1 chr1:41492992-41493492 ( 15) CTGAGTCAT 1 chr13:35891803-35892303 ( 64) CTGAGTCAT 1 chr6:69865052-69865552 ( 47) ATGAGTCAC 1 chr5:142821971-142822471 ( 90) CTGAGTCAT 1 chr19:39032951-39033451 ( 51) ATGAGTCAC 1 chr19:47253338-47253838 ( 49) ATGAGTCAC 1 chr16:15502230-15502730 ( 60) ATGAGTCAC 1 chr17:35254304-35254804 ( 61) ATGAGTCAC 1 chr10:102426723-10242722 ( 20) ATGAGTCAC 1 chr6:27633156-27633656 ( 19) ATGAGTCAC 1 chr16:21511440-21511940 ( 14) CTGAGTCAT 1 chrX:154541848-154542348 ( 41) ATGAGTCAC 1 chr7:99751548-99752048 ( 50) GTGAGTCAT 1 chr22:30017315-30017815 ( 69) GTGAGTCAT 1 chr7:99699102-99699602 ( 36) GTGAGTCAT 1 chr5:140190171-140190671 ( 77) GTGAGTCAT 1 chr10:95485285-95485785 ( 53) GTGAGTCAT 1 chr22:38924319-38924819 ( 31) GTGAGTCAT 1 chr10:78798989-78799489 ( 36) GTGAGTCAT 1 chr15:65954202-65954702 ( 41) GTGAGTCAT 1 chr19:39684181-39684681 ( 65) GTGAGTCAT 1 chr6:31777110-31777610 ( 51) CTGAGTCAC 1 chr1:199490764-199491264 ( 56) ATGAGTCAG 1 chr6:43570899-43571399 ( 37) CTGAGTCAC 1 chr14:101962443-10196294 ( 85) ATGAGTCAG 1 chr1:225425308-225425808 ( 18) CTGAGTCAC 1 chr8:106045566-106046066 ( 85) CTGAGTCAC 1 chr7:18576104-18576604 ( 87) ATGAGTCAG 1 chr14:94342258-94342758 ( 38) ATGAGTCAG 1 chr13:75771789-75772289 ( 61) CTGAGTCAC 1 chr1:156661273-156661773 ( 40) CTGAGTCAC 1 chr15:65796535-65797035 ( 22) ATGAGTCAG 1 chr17:45948981-45949481 ( 3) CTGAGTCAC 1 chr3:125917095-125917595 ( 66) ATGAGTCAG 1 chr10:43353399-43353899 ( 76) CTGAGTCAC 1 chr8:27617000-27617500 ( 18) CTGAGTCAC 1 chr19:36070361-36070861 ( 34) GTGAGTCAC 1 chr17:45371624-45372124 ( 29) GTGAGTCAC 1 chr3:198071854-198072354 ( 59) GTGAGTCAC 1 chr8:28624917-28625417 ( 9) GTGAGTCAC 1 chr2:160352329-160352829 ( 80) GTGAGTCAC 1 chr8:70180543-70181043 ( 74) CTGAGTCAG 1 chr16:2915982-2916482 ( 62) CTGAGTCAG 1 chr22:29979158-29979658 ( 33) CTGAGTCAG 1 chr2:191899385-191899885 ( 72) CTGAGTCAG 1 chr16:15021454-15021954 ( 30) GTGAGTCAG 1 chr17:1080693-1081193 ( 60) GTGAGTCAG 1 chr6:84926718-84927218 ( 4) GTGAGTCAG 1 chr16:15590845-15591345 ( 71) GTGAGTCAG 1 chr1:26531015-26531515 ( 70) GTGAGTCAG 1 chr15:74790562-74791062 ( 25) GTGAGTCAG 1 chr7:44735421-44735921 ( 9) ATTAGTCAT 1 chr5:141521105-141521605 ( 38) TTGAGTCAT 1 chr4:37561846-37562346 ( 92) TTGAGTCAT 1 chr6:106620898-106621398 ( 11) ATTAGTCAT 1 chr6:111809195-111809695 ( 56) ATTAGTCAT 1 chr12:26112743-26113243 ( 48) ATTAGTCAT 1 chr6:141326331-141326831 ( 89) ATTAGTCAT 1 chr6:142323337-142323837 ( 12) ATTAGTCAT 1 chr16:88782332-88782832 ( 56) TTGAGTCAT 1 chr15:72228336-72228836 ( 82) TTGAGTCAT 1 chr3:48989557-48990057 ( 60) TTGAGTCAT 1 chr17:4945157-4945657 ( 30) TTGAGTCAT 1 chr7:129332673-129333173 ( 84) CTTAGTCAT 1 chr8:37229054-37229554 ( 22) ATTAGTCAC 1 chr7:101941959-101942459 ( 14) CTTAGTCAT 1 chr8:8288462-8288962 ( 42) ATTAGTCAC 1 chr19:41595171-41595671 ( 46) CTTAGTCAT 1 chr1:119645819-119646319 ( 40) CTTAGTCAT 1 chr6:30769540-30770040 ( 60) CTTAGTCAC 1 chr1:92940495-92940995 ( 61) ATGAATCAT 1 chr5:69521096-69521596 ( 21) ATGAATCAT 1 chr5:125326015-125326515 ( 22) ATGAATCAT 1 chr12:110555725-11055622 ( 4) ATGAATCAT 1 chr10:98432288-98432788 ( 50) ATGAGACAT 1 chr22:36534952-36535452 ( 61) ATGAGACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCAY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55108 bayes= 8.80424 E= 1.2e-053 83 20 -23 -223 -1333 -1333 -1333 188 -1333 -1333 194 -111 188 -1333 -1333 -1333 -281 -1333 208 -1333 -381 -1333 -1333 185 -1333 214 -1333 -1333 188 -1333 -1333 -1333 -1333 36 -55 102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCAY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 103 E= 1.2e-053 0.485437 0.262136 0.194175 0.058252 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.873786 0.126214 1.000000 0.000000 0.000000 0.000000 0.038835 0.000000 0.961165 0.000000 0.019417 0.000000 0.000000 0.980583 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.291262 0.155340 0.553398 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCAY MEME-4 regular expression -------------------------------------------------------------------------------- [AC]TGAGTCA[TC] -------------------------------------------------------------------------------- Time 1259.31 secs. ******************************************************************************** ******************************************************************************** MOTIF CYKGGCWCNRTGCCMR MEME-5 width = 16 sites = 87 llr = 900 E-value = 4.4e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYKGGCWCNRTGCCMR MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::2:23::::43 pos.-specific C 7611182832239951 probability G 2:389:22342711:5 matrix T 146::24:215::::: bits 2.1 1.9 * 1.7 ** 1.5 * * ** Relative 1.3 *** * ** Entropy 1.1 ** *** * *** (14.9 bits) 0.9 ** *** * *** 0.6 ****** * ***** 0.4 ****** * ****** 0.2 ****** * ******* 0.0 ---------------- Multilevel CCTGGCTCGGTGCCCG consensus TG A CACC AA sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYKGGCWCNRTGCCMR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr14:93859986-93860486 - 53 2.89e-09 GTTCCCTGTG CCTGGCTCGGCGCCAG TTCTTGCCAG chr11:3052073-3052573 - 81 5.70e-09 GGCC CCTGGCTCTGTGCCAG GCAGCTTTTA chr12:57245184-57245684 + 54 1.30e-08 gtggcgcaat cttggctcagtgccag ctccgcctcc chr6:31777110-31777610 + 61 1.78e-08 GTGACTCAGG CCTGGCACAGTGCCAG GGACAGACCC chr12:120091281-12009178 + 58 1.78e-08 TTGGCAAATA CCTGGCACAGTGCCAG CTCTGAGGGG chr17:38341280-38341780 - 32 3.02e-08 CAGCAGGCAG CCTGGCTCCTTGCCAG CTCAGCCCAG chr7:101214639-101215139 + 11 3.02e-08 aaaaaaagtc cctggcccggtgccca ggcacagcat chr22:36369788-36370288 + 44 3.76e-08 AAATATATCA CCTGGCACTGTGCCAG ATAAATTGTG chr1:210584365-210584865 + 68 4.62e-08 CGTTTGTGTC CTTGGCTCAGTGCCCA ACCTTCTCTT chr1:41380885-41381385 + 38 5.75e-08 TTTTCGGGCT CCTGGCGCCACGCCAG GCTGGAGAGG chr14:24425628-24426128 + 58 7.07e-08 ATCTTTCATT CTTGGCACAGTGCCAG ATCTTCTTGG chr1:234977852-234978352 - 36 8.80e-08 CTCTCTCCTG CCTGGCACAGTGCCAA GCTTCTGCCA chr22:29979158-29979658 - 70 1.08e-07 GTGGCGTGAT CTTGGCTCACTGCCAG CTCCACCTCC chr17:40314533-40315033 - 19 1.31e-07 AAGAGCTGAG CCTGGCACCTTGCCAG CCCCAGGACA chr6:157649757-157650257 + 9 1.57e-07 GGAGAGGG GCTGGCTCTGTGCCAG GCGCTGGGGG chr5:41747193-41747693 - 41 2.61e-07 TTATCTAACA CTTGGCACAGTGCCAA CCCATACTCA chr15:74196128-74196628 + 1 2.61e-07 . ctgGGCCCCGTGCCAA AGGGACTTGG chr12:65327031-65327531 + 38 3.09e-07 CCATGAGGGA CTTGGCACTATGCCAG GATGCTGAAA chr8:28004394-28004894 - 83 3.09e-07 AG CTGGGCACAGTGCCCA GGGAATCAGC chr14:101962443-10196294 - 14 3.65e-07 ACATCTGCAA CCTGGCCCCAGGCCAA GAGAACAAAC chr7:99375886-99376386 - 59 3.65e-07 GTGGTACAGT CTTGGCTCACTGCCAA GGCAGGTTCA chr6:28643245-28643745 + 47 5.70e-07 gtatgaggtc ccgggttcgatccccg gcatctccaA chr6:28789549-28790049 - 30 5.70e-07 GTATGAGGTC CCGGGTTCGATCCCCG GCACCTCCAA chr17:43544416-43544916 - 62 6.58e-07 TTGAATGGAA CTTGGCCCCAGGCCCA TTTTCCTGGT chr6:31122853-31123353 - 75 7.61e-07 CGGCTGGAGA CCTGGCAGGAGGCCAG GAGAGACTGT chr6:28719471-28719971 + 80 1.01e-06 gcacgaggcc ccgggttcaatccccg gcacc chr6:28863424-28863924 - 70 1.01e-06 GCACGAGGCC CCGGGTTCAATCCCCG GCACCTCCAG chr6:28729106-28729606 + 56 1.15e-06 gtacgaggcc ccgggttcgacccccg gctcctccaG chr15:72315923-72316423 - 16 1.15e-06 CATATGTTCT CTGGGCAGGATGCCAG GAGCAAATGA chr1:16512750-16513250 + 56 1.31e-06 CCTGGGAGAG GCTGGCACAATGCCCA GAACCGCCAT chr17:45948981-45949481 - 29 1.69e-06 AAGGAAGGTC CCGGGCTCCGCCGCCG CGCACCAGGC chr2:58042470-58042970 - 34 1.92e-06 AAAGGACTTT CTTGGCTGTATGCCAA CTTGTAGGTA chr14:94342258-94342758 + 59 2.45e-06 TCTGTCACTA CTGGGCTGCTTGCCCA CTCAGCTTAA chr6:28735227-28735727 - 11 3.10e-06 TCATGAGGCT CTGGGTTCGATCCCCA GCACTTCCAC chr17:45316639-45317139 + 83 3.10e-06 TCCCTGGTCG CCTCGCACCGGGCCCC AG chr17:46742759-46743259 + 21 3.47e-06 GCTTCTTACT CTTGGCTCTGAGCCAA TTTCCTCCTC chr6:28802597-28803097 - 12 4.84e-06 TGTATGAGGC CTCGGTTCGATCCCCG ACACCTCCAA chr6:28811869-28812369 - 12 4.84e-06 GCACGAGGTC CTGGGTTCAATCCCCA ATACCTCCAG chr1:231628398-231628898 + 73 5.40e-06 caactgtgtt cttggccgcttgccaa actgAACTTA chr22:36781912-36782412 - 58 6.00e-06 TCAGGACATC GCGGCCTCCGTGCCCC GCCGAGGCCA chr1:243850740-243851240 - 27 6.65e-06 ACGCCCGGGG CCTGGCGGCGCGCGCG TCCGCGGCCA chr5:73640651-73641151 + 62 6.65e-06 AGTGTAATCA GTTGGTACTGTGCCAG TTCCTAAGTC chr1:112956200-112956700 + 13 7.36e-06 CCAGTCCGAC CCGCGCGCTGCGCCCC TGCTGAGCGG chr6:31902122-31902622 + 50 7.36e-06 cgctccgcgt ccccgcgccccgcccg cgccgcatcc chr1:16535075-16535575 - 13 8.14e-06 CCGCCGCGGC CCGGGTTCGATTCCCG GTCAGGGAAT chr6:33276971-33277471 - 24 8.14e-06 CCTTGTCGCC GCGGCCTCGCCGCCAG CAAGCTCCGC chr17:37609245-37609745 - 30 8.14e-06 GGGGAGTCAC GTGGGCGCGAGGCCCC GCCCCATCGC chr16:29943427-29943927 - 27 9.00e-06 GAATAATAAA CTTGGCAGCTGGCCAA GTTAGGTCAG chr17:1080693-1081193 + 81 9.00e-06 TGAGAAGCCA CCTGGCAGAAAGCCAG GGGC chr17:80639564-80640064 + 27 9.00e-06 GTTAGCAGTG GCTGGTGGAGTGCCAG CTCTTTGGAA chr6:29966034-29966534 + 40 9.93e-06 ACCAGCAGCT CTTGGCCCAAAGCCAA ACCCAGCAGG chr19:41501316-41501816 - 49 1.09e-05 AGATGGTTCC TTTGGCTCTCTGCCAA TACAGGGTGA chr6:28817006-28817506 - 38 1.09e-05 GTATGAGGCC TCGGGTTCGATCCCCG ACACCTCCAA chr10:121216745-12121724 - 21 1.09e-05 CACATCAGCA GCGAGCTCCGTGCCAA TCCTGCATGC chr1:26677501-26678001 - 66 1.20e-05 CTCAAGTGCA GCTGGCCCTTGGCCAA GCTTCCTCTC chr6:32838597-32839097 + 25 1.32e-05 GGCCTTCATT CTGGGCTGGGCCGCCG GGAGGGGGCG chr19:34254829-34255329 + 60 1.32e-05 CCCGGGGCTG CCGGGCGGGCTGCGCG CACCTTCCCG chr19:16569889-16570389 + 57 1.45e-05 TGTGTGAAGT TCCGGCTCCTTGCCCA AGCTGGGTAC chr11:518550-519050 - 63 1.59e-05 GCGGCTCCTT CCTCGCGCGCCGCCGG CCACATCCAG chr6:28747607-28748107 - 73 1.73e-05 CTCTGGCTCG CCTGCCGCGCTGCCTG ATACGCGGTT chr8:17495756-17496256 + 85 1.73e-05 GCAATACAAA TCTGGCACTTTGCCAA chr4:78213187-78213687 + 9 1.89e-05 tccattga cttggccgttggccaa aatgcagtca chr17:38825277-38825777 - 81 2.07e-05 AGCC GTGGGCACAGGCCCAC GGCAACCCAT chr9:11171-11671 + 34 2.25e-05 accgccccct gctggcgccggggcac tgcagggtcc chrX:154541848-154542348 - 57 2.45e-05 TCATGATGAT GTTGGCACTCCCCCAA AGCCCCGGTG chr19:36418327-36418827 - 41 2.67e-05 TCGCTGTGCC TCGGGTTCGCGCCCCG AGTGAGCAGT chr17:1589934-1590434 + 21 3.14e-05 CTAAGGCTGA CTCAGCTCAGGCCCCG GGGAAGTCCT chr1:41360979-41361479 + 19 3.14e-05 CCCTAGCCCC CCCGCCTCCGCGCCGA GCAGGGGGCG chr6:28725786-28726286 + 81 3.98e-05 acaggagatc ctgggttcgactccca gcgg chr6:28757439-28757939 - 23 3.98e-05 ACACTGAGGT CCGGGCGCGGTGGCTC ACGTCTGTAA chr19:54189268-54189768 - 35 3.98e-05 TCCGGGGCTT CTTCCCTGCCCGCCCG GGGCCCTGAC chr19:40602184-40602684 + 42 4.30e-05 ATCGGGCCTT CCTGCCCCCTACCCCG CAGACCCTAT chr1:156661273-156661773 + 70 4.64e-05 GAGTCCAACC CCTGGCCCAGTCCgtg tgtgtgtgtg chr5:43042956-43043456 - 33 5.00e-05 CAGCTGATCG CTGGGTCCCAGCGCCG CTGGTTTCAC chr6:28838789-28839289 + 77 5.00e-05 AGAATCCGCT CCCGGTCCGGTCCCGA TTGGCAGA chr12:12267153-12267653 + 55 5.38e-05 AGGTGGGGCT CCGGTCTCGCGCCCCC AGCCACCTGA chr17:45894161-45894661 + 41 5.79e-05 GCGGCAGGGC GCTCGCGCGCGCCCAC TAGTGGCCGG chr6:30061020-30061520 + 31 7.16e-05 ATCTCGCTGC CCCGCCGCGGGCGCAG AGCTGGCGCT chr19:39792920-39793420 - 39 7.16e-05 TTCATGGGAT GTTCGCGGAGCGCCCC CTGGAGCTCA chr16:14974914-14975414 - 26 7.16e-05 GGCTCTACTT CCTCCTCCCGCGCCCC GCAGCTCCTT chr6:31734529-31735029 - 1 7.16e-05 CCTCCACATC TCTAGCGCGAGGCCCA chr17:45371624-45372124 + 4 7.67e-05 TTC CTGCGCGCTGCCCGCG GCCGTCCGGG chr19:40090511-40091011 + 58 8.21e-05 TCCGGCAGAT CCCGTCTGCACCCCCG GGTTCCTACT chr3:48989557-48990057 + 85 8.78e-05 GCTGCCTCCT CCGCGCTGCGCTCCCC chr1:26620608-26621108 - 71 1.00e-04 CCGGGCGCGC CCGAGCCCTCCGCCGG AACTCGTTCC chr6:170280345-170280845 - 62 1.55e-04 AGAGTCTCAG GCTCGCTGGTGGCGCG CCTAGGTGAT chr17:46193149-46193649 - 1 1.94e-04 TTTTCCCAGT GCCGCCGCCACCGCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYKGGCWCNRTGCCMR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:93859986-93860486 2.9e-09 52_[-5]_32 chr11:3052073-3052573 5.7e-09 80_[-5]_4 chr12:57245184-57245684 1.3e-08 53_[+5]_31 chr6:31777110-31777610 1.8e-08 60_[+5]_24 chr12:120091281-12009178 1.8e-08 57_[+5]_27 chr17:38341280-38341780 3e-08 31_[-5]_53 chr7:101214639-101215139 3e-08 10_[+5]_74 chr22:36369788-36370288 3.8e-08 43_[+5]_41 chr1:210584365-210584865 4.6e-08 67_[+5]_17 chr1:41380885-41381385 5.7e-08 37_[+5]_47 chr14:24425628-24426128 7.1e-08 57_[+5]_27 chr1:234977852-234978352 8.8e-08 35_[-5]_49 chr22:29979158-29979658 1.1e-07 69_[-5]_15 chr17:40314533-40315033 1.3e-07 18_[-5]_66 chr6:157649757-157650257 1.6e-07 8_[+5]_76 chr5:41747193-41747693 2.6e-07 40_[-5]_44 chr15:74196128-74196628 2.6e-07 [+5]_84 chr12:65327031-65327531 3.1e-07 37_[+5]_47 chr8:28004394-28004894 3.1e-07 82_[-5]_2 chr14:101962443-10196294 3.6e-07 13_[-5]_71 chr7:99375886-99376386 3.6e-07 58_[-5]_26 chr6:28643245-28643745 5.7e-07 46_[+5]_38 chr6:28789549-28790049 5.7e-07 29_[-5]_55 chr17:43544416-43544916 6.6e-07 61_[-5]_23 chr6:31122853-31123353 7.6e-07 74_[-5]_10 chr6:28719471-28719971 1e-06 79_[+5]_5 chr6:28863424-28863924 1e-06 69_[-5]_15 chr6:28729106-28729606 1.2e-06 55_[+5]_29 chr15:72315923-72316423 1.2e-06 15_[-5]_69 chr1:16512750-16513250 1.3e-06 55_[+5]_29 chr17:45948981-45949481 1.7e-06 28_[-5]_56 chr2:58042470-58042970 1.9e-06 33_[-5]_51 chr14:94342258-94342758 2.5e-06 58_[+5]_26 chr6:28735227-28735727 3.1e-06 10_[-5]_74 chr17:45316639-45317139 3.1e-06 82_[+5]_2 chr17:46742759-46743259 3.5e-06 20_[+5]_64 chr6:28802597-28803097 4.8e-06 11_[-5]_73 chr6:28811869-28812369 4.8e-06 11_[-5]_73 chr1:231628398-231628898 5.4e-06 72_[+5]_12 chr22:36781912-36782412 6e-06 57_[-5]_27 chr1:243850740-243851240 6.6e-06 26_[-5]_58 chr5:73640651-73641151 6.6e-06 61_[+5]_23 chr1:112956200-112956700 7.4e-06 12_[+5]_72 chr6:31902122-31902622 7.4e-06 49_[+5]_35 chr1:16535075-16535575 8.1e-06 12_[-5]_72 chr6:33276971-33277471 8.1e-06 23_[-5]_61 chr17:37609245-37609745 8.1e-06 29_[-5]_55 chr16:29943427-29943927 9e-06 26_[-5]_58 chr17:1080693-1081193 9e-06 80_[+5]_4 chr17:80639564-80640064 9e-06 26_[+5]_58 chr6:29966034-29966534 9.9e-06 39_[+5]_45 chr19:41501316-41501816 1.1e-05 48_[-5]_36 chr6:28817006-28817506 1.1e-05 37_[-5]_47 chr10:121216745-12121724 1.1e-05 20_[-5]_64 chr1:26677501-26678001 1.2e-05 65_[-5]_19 chr6:32838597-32839097 1.3e-05 24_[+5]_60 chr19:34254829-34255329 1.3e-05 59_[+5]_25 chr19:16569889-16570389 1.4e-05 56_[+5]_28 chr11:518550-519050 1.6e-05 62_[-5]_22 chr6:28747607-28748107 1.7e-05 72_[-5]_12 chr8:17495756-17496256 1.7e-05 84_[+5] chr4:78213187-78213687 1.9e-05 8_[+5]_76 chr17:38825277-38825777 2.1e-05 80_[-5]_4 chr9:11171-11671 2.3e-05 33_[+5]_51 chrX:154541848-154542348 2.5e-05 56_[-5]_28 chr19:36418327-36418827 2.7e-05 40_[-5]_44 chr17:1589934-1590434 3.1e-05 20_[+5]_64 chr1:41360979-41361479 3.1e-05 18_[+5]_66 chr6:28725786-28726286 4e-05 80_[+5]_4 chr6:28757439-28757939 4e-05 22_[-5]_62 chr19:54189268-54189768 4e-05 34_[-5]_50 chr19:40602184-40602684 4.3e-05 41_[+5]_43 chr1:156661273-156661773 4.6e-05 69_[+5]_15 chr5:43042956-43043456 5e-05 32_[-5]_52 chr6:28838789-28839289 5e-05 76_[+5]_8 chr12:12267153-12267653 5.4e-05 54_[+5]_30 chr17:45894161-45894661 5.8e-05 40_[+5]_44 chr6:30061020-30061520 7.2e-05 30_[+5]_54 chr19:39792920-39793420 7.2e-05 38_[-5]_46 chr16:14974914-14975414 7.2e-05 25_[-5]_59 chr6:31734529-31735029 7.2e-05 [-5]_84 chr17:45371624-45372124 7.7e-05 3_[+5]_81 chr19:40090511-40091011 8.2e-05 57_[+5]_27 chr3:48989557-48990057 8.8e-05 84_[+5] chr1:26620608-26621108 0.0001 70_[-5]_14 chr6:170280345-170280845 0.00015 61_[-5]_23 chr17:46193149-46193649 0.00019 [-5]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYKGGCWCNRTGCCMR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYKGGCWCNRTGCCMR width=16 seqs=87 chr14:93859986-93860486 ( 53) CCTGGCTCGGCGCCAG 1 chr11:3052073-3052573 ( 81) CCTGGCTCTGTGCCAG 1 chr12:57245184-57245684 ( 54) CTTGGCTCAGTGCCAG 1 chr6:31777110-31777610 ( 61) CCTGGCACAGTGCCAG 1 chr12:120091281-12009178 ( 58) CCTGGCACAGTGCCAG 1 chr17:38341280-38341780 ( 32) CCTGGCTCCTTGCCAG 1 chr7:101214639-101215139 ( 11) CCTGGCCCGGTGCCCA 1 chr22:36369788-36370288 ( 44) CCTGGCACTGTGCCAG 1 chr1:210584365-210584865 ( 68) CTTGGCTCAGTGCCCA 1 chr1:41380885-41381385 ( 38) CCTGGCGCCACGCCAG 1 chr14:24425628-24426128 ( 58) CTTGGCACAGTGCCAG 1 chr1:234977852-234978352 ( 36) CCTGGCACAGTGCCAA 1 chr22:29979158-29979658 ( 70) CTTGGCTCACTGCCAG 1 chr17:40314533-40315033 ( 19) CCTGGCACCTTGCCAG 1 chr6:157649757-157650257 ( 9) GCTGGCTCTGTGCCAG 1 chr5:41747193-41747693 ( 41) CTTGGCACAGTGCCAA 1 chr15:74196128-74196628 ( 1) CTGGGCCCCGTGCCAA 1 chr12:65327031-65327531 ( 38) CTTGGCACTATGCCAG 1 chr8:28004394-28004894 ( 83) CTGGGCACAGTGCCCA 1 chr14:101962443-10196294 ( 14) CCTGGCCCCAGGCCAA 1 chr7:99375886-99376386 ( 59) CTTGGCTCACTGCCAA 1 chr6:28643245-28643745 ( 47) CCGGGTTCGATCCCCG 1 chr6:28789549-28790049 ( 30) CCGGGTTCGATCCCCG 1 chr17:43544416-43544916 ( 62) CTTGGCCCCAGGCCCA 1 chr6:31122853-31123353 ( 75) CCTGGCAGGAGGCCAG 1 chr6:28719471-28719971 ( 80) CCGGGTTCAATCCCCG 1 chr6:28863424-28863924 ( 70) CCGGGTTCAATCCCCG 1 chr6:28729106-28729606 ( 56) CCGGGTTCGACCCCCG 1 chr15:72315923-72316423 ( 16) CTGGGCAGGATGCCAG 1 chr1:16512750-16513250 ( 56) GCTGGCACAATGCCCA 1 chr17:45948981-45949481 ( 29) CCGGGCTCCGCCGCCG 1 chr2:58042470-58042970 ( 34) CTTGGCTGTATGCCAA 1 chr14:94342258-94342758 ( 59) CTGGGCTGCTTGCCCA 1 chr6:28735227-28735727 ( 11) CTGGGTTCGATCCCCA 1 chr17:45316639-45317139 ( 83) CCTCGCACCGGGCCCC 1 chr17:46742759-46743259 ( 21) CTTGGCTCTGAGCCAA 1 chr6:28802597-28803097 ( 12) CTCGGTTCGATCCCCG 1 chr6:28811869-28812369 ( 12) CTGGGTTCAATCCCCA 1 chr1:231628398-231628898 ( 73) CTTGGCCGCTTGCCAA 1 chr22:36781912-36782412 ( 58) GCGGCCTCCGTGCCCC 1 chr1:243850740-243851240 ( 27) CCTGGCGGCGCGCGCG 1 chr5:73640651-73641151 ( 62) GTTGGTACTGTGCCAG 1 chr1:112956200-112956700 ( 13) CCGCGCGCTGCGCCCC 1 chr6:31902122-31902622 ( 50) CCCCGCGCCCCGCCCG 1 chr1:16535075-16535575 ( 13) CCGGGTTCGATTCCCG 1 chr6:33276971-33277471 ( 24) GCGGCCTCGCCGCCAG 1 chr17:37609245-37609745 ( 30) GTGGGCGCGAGGCCCC 1 chr16:29943427-29943927 ( 27) CTTGGCAGCTGGCCAA 1 chr17:1080693-1081193 ( 81) CCTGGCAGAAAGCCAG 1 chr17:80639564-80640064 ( 27) GCTGGTGGAGTGCCAG 1 chr6:29966034-29966534 ( 40) CTTGGCCCAAAGCCAA 1 chr19:41501316-41501816 ( 49) TTTGGCTCTCTGCCAA 1 chr6:28817006-28817506 ( 38) TCGGGTTCGATCCCCG 1 chr10:121216745-12121724 ( 21) GCGAGCTCCGTGCCAA 1 chr1:26677501-26678001 ( 66) GCTGGCCCTTGGCCAA 1 chr6:32838597-32839097 ( 25) CTGGGCTGGGCCGCCG 1 chr19:34254829-34255329 ( 60) CCGGGCGGGCTGCGCG 1 chr19:16569889-16570389 ( 57) TCCGGCTCCTTGCCCA 1 chr11:518550-519050 ( 63) CCTCGCGCGCCGCCGG 1 chr6:28747607-28748107 ( 73) CCTGCCGCGCTGCCTG 1 chr8:17495756-17496256 ( 85) TCTGGCACTTTGCCAA 1 chr4:78213187-78213687 ( 9) CTTGGCCGTTGGCCAA 1 chr17:38825277-38825777 ( 81) GTGGGCACAGGCCCAC 1 chr9:11171-11671 ( 34) GCTGGCGCCGGGGCAC 1 chrX:154541848-154542348 ( 57) GTTGGCACTCCCCCAA 1 chr19:36418327-36418827 ( 41) TCGGGTTCGCGCCCCG 1 chr17:1589934-1590434 ( 21) CTCAGCTCAGGCCCCG 1 chr1:41360979-41361479 ( 19) CCCGCCTCCGCGCCGA 1 chr6:28725786-28726286 ( 81) CTGGGTTCGACTCCCA 1 chr6:28757439-28757939 ( 23) CCGGGCGCGGTGGCTC 1 chr19:54189268-54189768 ( 35) CTTCCCTGCCCGCCCG 1 chr19:40602184-40602684 ( 42) CCTGCCCCCTACCCCG 1 chr1:156661273-156661773 ( 70) CCTGGCCCAGTCCGTG 1 chr5:43042956-43043456 ( 33) CTGGGTCCCAGCGCCG 1 chr6:28838789-28839289 ( 77) CCCGGTCCGGTCCCGA 1 chr12:12267153-12267653 ( 55) CCGGTCTCGCGCCCCC 1 chr17:45894161-45894661 ( 41) GCTCGCGCGCGCCCAC 1 chr6:30061020-30061520 ( 31) CCCGCCGCGGGCGCAG 1 chr19:39792920-39793420 ( 39) GTTCGCGGAGCGCCCC 1 chr16:14974914-14975414 ( 26) CCTCCTCCCGCGCCCC 1 chr6:31734529-31735029 ( 1) TCTAGCGCGAGGCCCA 1 chr17:45371624-45372124 ( 4) CTGCGCGCTGCCCGCG 1 chr19:40090511-40091011 ( 58) CCCGTCTGCACCCCCG 1 chr3:48989557-48990057 ( 85) CCGCGCTGCGCTCCCC 1 chr1:26620608-26621108 ( 71) CCGAGCCCTCCGCCGG 1 chr6:170280345-170280845 ( 62) GCTCGCTGGTGGCGCG 1 chr17:46193149-46193649 ( 1) GCCGCCGCCACCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYKGGCWCNRTGCCMR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50915 bayes= 10.2083 E= 4.4e-048 -1309 172 -31 -198 -1309 145 -1309 48 -1309 -114 60 102 -257 -85 186 -1309 -1309 -114 194 -357 -1309 182 -1309 -48 -32 -50 -22 64 -1309 182 -22 -1309 -17 34 39 -66 13 -50 86 -111 -257 9 -14 89 -1309 34 158 -298 -1309 201 -150 -1309 -1309 205 -198 -1309 72 105 -231 -298 29 -72 122 -1309 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYKGGCWCNRTGCCMR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 87 E= 4.4e-048 0.000000 0.747126 0.183908 0.068966 0.000000 0.620690 0.000000 0.379310 0.000000 0.103448 0.344828 0.551724 0.045977 0.126437 0.827586 0.000000 0.000000 0.103448 0.873563 0.022989 0.000000 0.804598 0.000000 0.195402 0.218391 0.160920 0.195402 0.425287 0.000000 0.804598 0.195402 0.000000 0.241379 0.287356 0.298851 0.172414 0.298851 0.160920 0.413793 0.126437 0.045977 0.241379 0.206897 0.505747 0.000000 0.287356 0.678161 0.034483 0.000000 0.919540 0.080460 0.000000 0.000000 0.942529 0.057471 0.000000 0.448276 0.471264 0.045977 0.034483 0.333333 0.137931 0.528736 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYKGGCWCNRTGCCMR MEME-5 regular expression -------------------------------------------------------------------------------- C[CT][TG]GGC[TA]C[GCA][GA][TCG][GC]CC[CA][GA] -------------------------------------------------------------------------------- Time 1541.37 secs. ******************************************************************************** ******************************************************************************** MOTIF TAACTCTTGTCTAGGCTCTGCCTACAG MEME-6 width = 27 sites = 13 llr = 370 E-value = 6.8e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAACTCTTGTCTAGGCTCTGCCTACAG MEME-6 Description -------------------------------------------------------------------------------- Simplified A :8a11:::1::1a::::::1:::917: pos.-specific C 2::918::21a1:11a:91:9a119:: probability G 22::::::5::::88:::19:::::2a matrix T 6:::82aa29:8:22:a18:1:9::2: bits 2.1 * * * * 1.9 * ** * * ** * * 1.7 ** ** * * *** *** * * 1.5 ** *** ** * *** ****** * Relative 1.3 ** *** ** * *** ****** * Entropy 1.1 ******* **************** * (41.0 bits) 0.9 ******* **************** * 0.6 ******** ****************** 0.4 *************************** 0.2 *************************** 0.0 --------------------------- Multilevel TAACTCTTGTCTAGGCTCTGCCTACAG consensus GG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACTCTTGTCTAGGCTCTGCCTACAG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr10:133689862-13369036 - 22 5.46e-17 CCAGATGATG TAACTCTTGTCTAGGCTCTGCCTACAG AGGGCATTGT chr14_GL000225v1_random: + 5 4.61e-15 gatg taactcttttctaggctcggcctacag gggctttgtg chr10:133764511-13376501 - 60 5.39e-15 CCAGGTGATA GGACTCTTGTCTAGGCTCTGCCTACTG GAGCATTGTG chr14_GL000225v1_random: + 35 1.25e-14 ccagctgatg ggactcttgtccaggctctgcctacag aggcattgtg chr14_GL000225v1_random: + 23 1.60e-14 ccaggtgatg caactcttctctatgctctgcctacag gggacattgt chr14_GL000225v1_random: - 73 1.60e-14 G CAACTCTTCTCTATGCTCTGCCTACAG GGGGCATTGT chr14_GL000225v1_random: + 18 6.06e-14 ccaggtgatg taaatcttttctagtctctgcctacag agggcgttgt chr14_GL000225v1_random: + 46 1.51e-13 ccaggtgatg taacatttatctaggctctgcctacag gggcgttttg chr14_GL000225v1_random: + 5 1.62e-13 gatg taactcttgcctaggctttgcctactg gggacattgt chr14_GL000225v1_random: + 50 3.00e-13 ccaggtgatg taactcttgtctaggctccacctccag ggggtatggt chr14_GL000225v1_random: - 68 3.71e-13 GTGATG TAACCCTTTTCAAGTCTCTGCCTACAG AGGGCGTTGT chr18:107005-107505 + 7 4.59e-13 gtgatg ggacttttgtctaggctctgtctacgg gggcattgtg chr14_GL000225v1_random: + 41 4.74e-12 ctaggtgatg taactcttgtctaccctctgcccaagg gggcattgtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACTCTTGTCTAGGCTCTGCCTACAG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:133689862-13369036 5.5e-17 21_[-6]_52 chr14_GL000225v1_random: 4.6e-15 4_[+6]_69 chr10:133764511-13376501 5.4e-15 59_[-6]_14 chr14_GL000225v1_random: 1.2e-14 34_[+6]_39 chr14_GL000225v1_random: 1.6e-14 22_[+6]_51 chr14_GL000225v1_random: 1.6e-14 72_[-6]_1 chr14_GL000225v1_random: 6.1e-14 17_[+6]_56 chr14_GL000225v1_random: 1.5e-13 45_[+6]_28 chr14_GL000225v1_random: 1.6e-13 4_[+6]_69 chr14_GL000225v1_random: 3e-13 49_[+6]_24 chr14_GL000225v1_random: 3.7e-13 67_[-6]_6 chr18:107005-107505 4.6e-13 6_[+6]_67 chr14_GL000225v1_random: 4.7e-12 40_[+6]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACTCTTGTCTAGGCTCTGCCTACAG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAACTCTTGTCTAGGCTCTGCCTACAG width=27 seqs=13 chr10:133689862-13369036 ( 22) TAACTCTTGTCTAGGCTCTGCCTACAG 1 chr14_GL000225v1_random: ( 5) TAACTCTTTTCTAGGCTCGGCCTACAG 1 chr10:133764511-13376501 ( 60) GGACTCTTGTCTAGGCTCTGCCTACTG 1 chr14_GL000225v1_random: ( 35) GGACTCTTGTCCAGGCTCTGCCTACAG 1 chr14_GL000225v1_random: ( 23) CAACTCTTCTCTATGCTCTGCCTACAG 1 chr14_GL000225v1_random: ( 73) CAACTCTTCTCTATGCTCTGCCTACAG 1 chr14_GL000225v1_random: ( 18) TAAATCTTTTCTAGTCTCTGCCTACAG 1 chr14_GL000225v1_random: ( 46) TAACATTTATCTAGGCTCTGCCTACAG 1 chr14_GL000225v1_random: ( 5) TAACTCTTGCCTAGGCTTTGCCTACTG 1 chr14_GL000225v1_random: ( 50) TAACTCTTGTCTAGGCTCCACCTCCAG 1 chr14_GL000225v1_random: ( 68) TAACCCTTTTCAAGTCTCTGCCTACAG 1 chr18:107005-107505 ( 7) GGACTTTTGTCTAGGCTCTGTCTACGG 1 chr14_GL000225v1_random: ( 41) TAACTCTTGTCTACCCTCTGCCCAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACTCTTGTCTAGGCTCTGCCTACAG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44326 bayes= 12.2656 E= 6.8e-055 -1035 -56 2 117 150 -1035 2 -1035 187 -1035 -1035 -1035 -182 202 -1035 -1035 -182 -156 -1035 163 -1035 189 -1035 -82 -1035 -1035 -1035 187 -1035 -1035 -1035 187 -182 -56 124 -24 -1035 -156 -1035 176 -1035 214 -1035 -1035 -182 -156 -1035 163 187 -1035 -1035 -1035 -1035 -156 176 -82 -1035 -156 176 -82 -1035 214 -1035 -1035 -1035 -1035 -1035 187 -1035 202 -1035 -182 -1035 -156 -156 163 -182 -1035 202 -1035 -1035 202 -1035 -182 -1035 214 -1035 -1035 -1035 -156 -1035 176 176 -156 -1035 -1035 -182 202 -1035 -1035 134 -1035 -56 -82 -1035 -1035 214 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACTCTTGTCTAGGCTCTGCCTACAG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 13 E= 6.8e-055 0.000000 0.153846 0.230769 0.615385 0.769231 0.000000 0.230769 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.076923 0.076923 0.000000 0.846154 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.076923 0.153846 0.538462 0.230769 0.000000 0.076923 0.000000 0.923077 0.000000 1.000000 0.000000 0.000000 0.076923 0.076923 0.000000 0.846154 1.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.769231 0.153846 0.000000 0.076923 0.769231 0.153846 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.076923 0.076923 0.846154 0.076923 0.000000 0.923077 0.000000 0.000000 0.923077 0.000000 0.076923 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.000000 0.923077 0.923077 0.076923 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.692308 0.000000 0.153846 0.153846 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACTCTTGTCTAGGCTCTGCCTACAG MEME-6 regular expression -------------------------------------------------------------------------------- [TG][AG]ACTCTT[GT]TCTAGGCTCTGCCTACAG -------------------------------------------------------------------------------- Time 1811.93 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGAGATATGTCACAATGCCC MEME-7 width = 22 sites = 16 llr = 346 E-value = 2.0e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGAGATATGTCACAATGCCC MEME-7 Description -------------------------------------------------------------------------------- Simplified A 119:a19:9::::a:9911::: pos.-specific C :7:1:::1131:a:91:1:899 probability G 9119:8:2::8:::1:1:8::: matrix T :1:1:118:81a:::::81311 bits 2.1 * 1.9 * *** 1.7 * *** * 1.5 * *** ****** ** Relative 1.3 * *** * * ******* *** Entropy 1.1 * ***** ********* **** (31.2 bits) 0.9 * ******************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel GCAGAGATATGTCACAATGCCC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGAGATATGTCACAATGCCC MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr14_GL000225v1_random: + 50 5.22e-14 ggtgatcagt gcagagatatgtcacaatgccc cctgtaggca chr14_GL000225v1_random: - 51 2.02e-13 GGTGATCAGT GCAGAGATATGTCACAATGTCC CCTGTAGGCA chr14_GL000225v1_random: - 68 9.96e-13 GGTGATCAGT GCAGAGATATTTCACAATGCCC CCTTGGGCAG chr18:107005-107505 - 34 1.52e-12 GGTGATCAGT GTAGAGATATGTCACAATGCCC CCGTAGACAG chr10:133764511-13376501 + 38 1.84e-12 ggtcataagg gcagagatatgtcacaatgctc cagtaggcag chr14_GL000225v1_random: - 5 2.40e-12 GGTGATCAGT GCAGAGATACGTCACAATACCC CCTG chr14_GL000225v1_random: - 33 3.82e-12 GGTGATCAGT GCAGATATATGTCACAATGTCC CCAGTAGGCA chr14_GL000225v1_random: - 32 7.76e-12 GGTGATCAGT GCAGAAATATGTCACAAAGCCC CTGTAGGCCG chr14_GL000225v1_random: + 45 2.17e-11 ggtgatccgt gcagagtgatgtcacaacgccc tctgtaggca chr14_GL000225v1_random: - 46 2.17e-11 GGTGATCCGT GCAGAGTGATGTCACAACGCCC TCTGTAGGCA chr14_GL000225v1_random: - 78 4.45e-11 T GCAGAGATACGTCACCATACCC CCTGGAGGTG chr10:133689862-13369036 + 68 9.38e-11 gttgatcagt aaagagatatttcacaatgccc ctgcaggcag chrY:11327418-11327918 + 53 2.84e-10 ggtgatcagt ggagatatctgtcacaattccc ctttaggcgc chr14_GL000225v1_random: - 62 1.02e-08 CGTGATCACT GAGTAGACACGTCACAATGCCT CTGTAGGCAG chr9:18394811-18395311 + 64 1.80e-08 GCATTTTTCA GGACAGATCTGTCAGAGTTTCC TCTTGTTCTC chr3:190231895-190232395 - 7 5.94e-08 GAATGAATTC ACAGAAAGACCTCAGAAAGTCT GACATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGAGATATGTCACAATGCCC MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14_GL000225v1_random: 5.2e-14 49_[+7]_29 chr14_GL000225v1_random: 2e-13 50_[-7]_28 chr14_GL000225v1_random: 1e-12 67_[-7]_11 chr18:107005-107505 1.5e-12 33_[-7]_45 chr10:133764511-13376501 1.8e-12 37_[+7]_41 chr14_GL000225v1_random: 2.4e-12 4_[-7]_74 chr14_GL000225v1_random: 3.8e-12 32_[-7]_46 chr14_GL000225v1_random: 7.8e-12 31_[-7]_47 chr14_GL000225v1_random: 2.2e-11 44_[+7]_34 chr14_GL000225v1_random: 2.2e-11 45_[-7]_33 chr14_GL000225v1_random: 4.5e-11 77_[-7]_1 chr10:133689862-13369036 9.4e-11 67_[+7]_11 chrY:11327418-11327918 2.8e-10 52_[+7]_26 chr14_GL000225v1_random: 1e-08 61_[-7]_17 chr9:18394811-18395311 1.8e-08 63_[+7]_15 chr3:190231895-190232395 5.9e-08 6_[-7]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGAGATATGTCACAATGCCC MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGAGATATGTCACAATGCCC width=22 seqs=16 chr14_GL000225v1_random: ( 50) GCAGAGATATGTCACAATGCCC 1 chr14_GL000225v1_random: ( 51) GCAGAGATATGTCACAATGTCC 1 chr14_GL000225v1_random: ( 68) GCAGAGATATTTCACAATGCCC 1 chr18:107005-107505 ( 34) GTAGAGATATGTCACAATGCCC 1 chr10:133764511-13376501 ( 38) GCAGAGATATGTCACAATGCTC 1 chr14_GL000225v1_random: ( 5) GCAGAGATACGTCACAATACCC 1 chr14_GL000225v1_random: ( 33) GCAGATATATGTCACAATGTCC 1 chr14_GL000225v1_random: ( 32) GCAGAAATATGTCACAAAGCCC 1 chr14_GL000225v1_random: ( 45) GCAGAGTGATGTCACAACGCCC 1 chr14_GL000225v1_random: ( 46) GCAGAGTGATGTCACAACGCCC 1 chr14_GL000225v1_random: ( 78) GCAGAGATACGTCACCATACCC 1 chr10:133689862-13369036 ( 68) AAAGAGATATTTCACAATGCCC 1 chrY:11327418-11327918 ( 53) GGAGATATCTGTCACAATTCCC 1 chr14_GL000225v1_random: ( 62) GAGTAGACACGTCACAATGCCT 1 chr9:18394811-18395311 ( 64) GGACAGATCTGTCAGAGTTTCC 1 chr3:190231895-190232395 ( 7) ACAGAAAGACCTCAGAAAGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGAGATATGTCACAATGCCC MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 12.8519 E= 2.0e-042 -112 -1064 194 -1064 -112 159 -86 -212 178 -1064 -186 -1064 -1064 -186 194 -212 188 -1064 -1064 -1064 -112 -1064 172 -112 168 -1064 -1064 -112 -1064 -186 -28 146 168 -86 -1064 -1064 -1064 14 -1064 146 -1064 -186 184 -112 -1064 -1064 -1064 188 -1064 214 -1064 -1064 188 -1064 -1064 -1064 -1064 194 -86 -1064 178 -186 -1064 -1064 178 -1064 -186 -1064 -112 -86 -1064 146 -112 -1064 172 -112 -1064 172 -1064 -12 -1064 204 -1064 -212 -1064 194 -1064 -112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGAGATATGTCACAATGCCC MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 16 E= 2.0e-042 0.125000 0.000000 0.875000 0.000000 0.125000 0.687500 0.125000 0.062500 0.937500 0.000000 0.062500 0.000000 0.000000 0.062500 0.875000 0.062500 1.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.750000 0.125000 0.875000 0.000000 0.000000 0.125000 0.000000 0.062500 0.187500 0.750000 0.875000 0.125000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.062500 0.812500 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.937500 0.062500 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.125000 0.125000 0.000000 0.750000 0.125000 0.000000 0.750000 0.125000 0.000000 0.750000 0.000000 0.250000 0.000000 0.937500 0.000000 0.062500 0.000000 0.875000 0.000000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGAGATATGTCACAATGCCC MEME-7 regular expression -------------------------------------------------------------------------------- GCAGAGATA[TC]GTCACAATG[CT]CC -------------------------------------------------------------------------------- Time 2079.01 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAAGCATTCTCAGAAACTTCTTTGTGATGHTTGHATTCAACT MEME-8 width = 43 sites = 4 llr = 202 E-value = 4.2e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAAGCATTCTCAGAAACTTCTTTGTGATGHTTGHATTCAACT MEME-8 Description -------------------------------------------------------------------------------- Simplified A a:a8::8:::::a:8aa3:::::::::a::5:::38:::a8:: pos.-specific C :::::a:::a:a:::::8::8:::::::::3:::5:::8:3a: probability G :a::a::::::::a3::::3:::3a3a::a:::a:3::3:::: matrix T :::3::3aa:a:::::::a83aa8:8::a:3aa:3:aa::::a bits 2.1 * ** * * * * * * * * 1.9 *** ** ******* ** * ** * **** *** ** * ** 1.7 *** ** ******* ** * ** * **** *** ** * ** 1.5 *** ** ******* ** * ** * **** *** ** * ** Relative 1.3 *** ** ******* **** *** * **** *** **** ** Entropy 1.1 ****************************** *** ******** (72.8 bits) 0.9 ****************************** *** ******** 0.6 ****************************** *** ******** 0.4 ******************************************* 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel AGAAGCATTCTCAGAAACTTCTTTGTGATGATTGCATTCAACT consensus T T G A GT G G C AG G C sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGCATTCTCAGAAACTTCTTTGTGATGHTTGHATTCAACT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr17:26619784-26620284 + 35 6.33e-26 aaagctaaac agaagcattctcagaaacttctttgtgatgcttgcattcaact cacagagttg chr17:26885528-26886028 - 7 2.04e-24 AATACTAGAT AGAAGCATTCTCAGAAACTGCTTTGTGATGATTGCATTCACCT AACAGA chr17:26603654-26604154 + 58 1.76e-22 aaaactatac agatgcattctcaggaactttttggtgatgtttgtattcaact chr17:25919969-25920469 + 34 2.13e-22 aaaagaagac agaagctttctcagaaaattctttgggatgattgagttgaact cacagagctg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGCATTCTCAGAAACTTCTTTGTGATGHTTGHATTCAACT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:26619784-26620284 6.3e-26 34_[+8]_23 chr17:26885528-26886028 2e-24 6_[-8]_51 chr17:26603654-26604154 1.8e-22 57_[+8] chr17:25919969-25920469 2.1e-22 33_[+8]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGCATTCTCAGAAACTTCTTTGTGATGHTTGHATTCAACT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAAGCATTCTCAGAAACTTCTTTGTGATGHTTGHATTCAACT width=43 seqs=4 chr17:26619784-26620284 ( 35) AGAAGCATTCTCAGAAACTTCTTTGTGATGCTTGCATTCAACT 1 chr17:26885528-26886028 ( 7) AGAAGCATTCTCAGAAACTGCTTTGTGATGATTGCATTCACCT 1 chr17:26603654-26604154 ( 58) AGATGCATTCTCAGGAACTTTTTGGTGATGTTTGTATTCAACT 1 chr17:25919969-25920469 ( 34) AGAAGCTTTCTCAGAAAATTCTTTGGGATGATTGAGTTGAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGCATTCTCAGAAACTTCTTTGTGATGHTTGHATTCAACT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34742 bayes= 13.0842 E= 4.2e-010 187 -865 -865 -865 -865 -865 213 -865 187 -865 -865 -865 146 -865 -865 -12 -865 -865 213 -865 -865 213 -865 -865 146 -865 -865 -12 -865 -865 -865 187 -865 -865 -865 187 -865 213 -865 -865 -865 -865 -865 187 -865 213 -865 -865 187 -865 -865 -865 -865 -865 213 -865 146 -865 14 -865 187 -865 -865 -865 187 -865 -865 -865 -12 172 -865 -865 -865 -865 -865 187 -865 -865 14 146 -865 172 -865 -12 -865 -865 -865 187 -865 -865 -865 187 -865 -865 14 146 -865 -865 213 -865 -865 -865 14 146 -865 -865 213 -865 187 -865 -865 -865 -865 -865 -865 187 -865 -865 213 -865 87 14 -865 -12 -865 -865 -865 187 -865 -865 -865 187 -865 -865 213 -865 -12 113 -865 -12 146 -865 14 -865 -865 -865 -865 187 -865 -865 -865 187 -865 172 14 -865 187 -865 -865 -865 146 14 -865 -865 -865 213 -865 -865 -865 -865 -865 187 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGCATTCTCAGAAACTTCTTTGTGATGHTTGHATTCAACT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 4 E= 4.2e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.250000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.500000 0.000000 0.250000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGCATTCTCAGAAACTTCTTTGTGATGHTTGHATTCAACT MEME-8 regular expression -------------------------------------------------------------------------------- AGA[AT]GC[AT]TTCTCAG[AG]AA[CA]T[TG][CT]TT[TG]G[TG]GATG[ACT]TTG[CAT][AG]TT[CG]A[AC]CT -------------------------------------------------------------------------------- Time 2345.05 secs. ******************************************************************************** ******************************************************************************** MOTIF ARDWGCTGGGATTACA MEME-9 width = 16 sites = 12 llr = 203 E-value = 1.6e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARDWGCTGGGATTACA MEME-9 Description -------------------------------------------------------------------------------- Simplified A a635:::1::9::9:8 pos.-specific C :::::a::::11::9: probability G :44:9::9aa:2::11 matrix T ::351:a::::8a1:1 bits 2.1 * ** 1.9 * ** ** * 1.7 * ****** * * 1.5 * ******* *** Relative 1.3 * ******* *** Entropy 1.1 ** ******* **** (24.4 bits) 0.9 ** ************* 0.6 ** ************* 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel AAGAGCTGGGATTACA consensus GTT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARDWGCTGGGATTACA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr16:74996953-74997453 - 81 5.22e-10 CACA AAGTGCTGGGATTACA TCATGAGCCA chr6:28757439-28757939 + 2 5.22e-10 a aagtgctgggattaca gacgtgagcc chr10:102426723-10242722 + 1 5.22e-10 . aagtgctgggattaca gccatgagtc chr7:99375886-99376386 - 7 2.10e-09 CATCCTCCTA AGTAGCTGGGATTACA GGCATG chr7:92674871-92675371 + 24 2.73e-09 cagcctccca aaatgctgggattaca ggtgtgagcc chr19:39032951-39033451 - 63 6.41e-09 TGGCCTCCCA AAGTGCTGGGATTACG GGCATGAGTC chr19:47253338-47253838 + 30 1.36e-08 tggcctccca aagttctgggattaca ggcatgagtc chr22:29979158-29979658 - 10 1.45e-08 CAGCCTCCTG AGTAGCTGGGACTACA GGCACCTGC chr16:2915982-2916482 - 39 2.79e-08 CAGCTTCCTG AGTAGCTAGGATTACA GGCACGCACC chr15:74988358-74988858 + 36 4.25e-08 tcagcttccc agtagctgggagtact ggcatgtggc chr1:211037006-211037506 + 35 5.79e-08 gagtaagcag agaagctgggagtaga agcaaggcca chr9:4262526-4263026 - 76 1.06e-07 ATATCTGTG AAAAGCTGGGCTTTCA GGGGATGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARDWGCTGGGATTACA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:74996953-74997453 5.2e-10 80_[-9]_4 chr6:28757439-28757939 5.2e-10 1_[+9]_83 chr10:102426723-10242722 5.2e-10 [+9]_84 chr7:99375886-99376386 2.1e-09 6_[-9]_78 chr7:92674871-92675371 2.7e-09 23_[+9]_61 chr19:39032951-39033451 6.4e-09 62_[-9]_22 chr19:47253338-47253838 1.4e-08 29_[+9]_55 chr22:29979158-29979658 1.5e-08 9_[-9]_75 chr16:2915982-2916482 2.8e-08 38_[-9]_46 chr15:74988358-74988858 4.3e-08 35_[+9]_49 chr1:211037006-211037506 5.8e-08 34_[+9]_50 chr9:4262526-4263026 1.1e-07 75_[-9]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARDWGCTGGGATTACA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARDWGCTGGGATTACA width=16 seqs=12 chr16:74996953-74997453 ( 81) AAGTGCTGGGATTACA 1 chr6:28757439-28757939 ( 2) AAGTGCTGGGATTACA 1 chr10:102426723-10242722 ( 1) AAGTGCTGGGATTACA 1 chr7:99375886-99376386 ( 7) AGTAGCTGGGATTACA 1 chr7:92674871-92675371 ( 24) AAATGCTGGGATTACA 1 chr19:39032951-39033451 ( 63) AAGTGCTGGGATTACG 1 chr19:47253338-47253838 ( 30) AAGTTCTGGGATTACA 1 chr22:29979158-29979658 ( 10) AGTAGCTGGGACTACA 1 chr16:2915982-2916482 ( 39) AGTAGCTAGGATTACA 1 chr15:74988358-74988858 ( 36) AGTAGCTGGGAGTACT 1 chr1:211037006-211037506 ( 35) AGAAGCTGGGAGTAGA 1 chr9:4262526-4263026 ( 76) AAAAGCTGGGCTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARDWGCTGGGATTACA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50915 bayes= 13.1502 E= 1.6e-008 187 -1023 -1023 -1023 110 -1023 87 -1023 -12 -1023 87 29 88 -1023 -1023 88 -1023 -1023 201 -171 -1023 214 -1023 -1023 -1023 -1023 -1023 187 -171 -1023 201 -1023 -1023 -1023 214 -1023 -1023 -1023 214 -1023 175 -145 -1023 -1023 -1023 -145 -45 146 -1023 -1023 -1023 187 175 -1023 -1023 -171 -1023 201 -145 -1023 161 -1023 -145 -171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARDWGCTGGGATTACA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 12 E= 1.6e-008 1.000000 0.000000 0.000000 0.000000 0.583333 0.000000 0.416667 0.000000 0.250000 0.000000 0.416667 0.333333 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.916667 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.083333 0.166667 0.750000 0.000000 0.000000 0.000000 1.000000 0.916667 0.000000 0.000000 0.083333 0.000000 0.916667 0.083333 0.000000 0.833333 0.000000 0.083333 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARDWGCTGGGATTACA MEME-9 regular expression -------------------------------------------------------------------------------- A[AG][GTA][AT]GCTGGGATTACA -------------------------------------------------------------------------------- Time 2609.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCCCCTGSYGGSC MEME-10 width = 16 sites = 23 llr = 302 E-value = 9.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCCCCTGSYGGSC MEME-10 Description -------------------------------------------------------------------------------- Simplified A 2::::1::222::::2 pos.-specific C :a:8976a:134:158 probability G 8:a2:23::642a63: matrix T ::::::1:7:14:22: bits 2.1 ** * 1.9 ** * * 1.7 ** * * * 1.5 ***** * * * Relative 1.3 ***** * * * Entropy 1.1 ***** * * * (19.0 bits) 0.9 ******** * * 0.6 ********** ** * 0.4 ********** ***** 0.2 **************** 0.0 ---------------- Multilevel GCGCCCCCTGGTGGCC consensus GG ACC TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCCCTGSYGGSC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr22:36856304-36856804 + 51 1.64e-09 GCTGATCGCG GCGCCCCCTGGCGGTC TGTTCCCGTC chr14:106663901-10666440 + 32 2.14e-09 GTGGTTCTGA GCGCCCCCTGGTGTCC TGAGCACACT chr1:155250604-155251104 - 22 3.56e-09 GTGCTACACA GCGCCCCCTGCCGCCC ACAGTGTCCA chr6:30877646-30878146 + 42 2.41e-08 TGTGCAGCAA GCGCCCCCAAGTGGCC TTCCTGTTCA chr3:61564496-61564996 - 16 3.57e-08 TGGCTCGGGG GCGCCCCCTGAGGTCC AGCGGCGTCG chr6:31196901-31197401 - 33 9.76e-08 TGCGGTGACA GCGCCGCCTCGCGTCC TTTACTTCAA chr6:30672891-30673391 + 50 1.25e-07 AGTTTCTCTG ACGCCCCCTGATGGTC AGTCTGTGAG chr6:32984736-32985236 + 45 1.38e-07 AAGGTATTTG GCGCCACCTGTTGGGC GTGTTACCCA chr6:30717368-30717868 + 16 1.91e-07 AGAGAGTCTG GCGCCAGCTGCCGGCA ACGGATAGAG chr6:30130978-30131478 + 32 1.91e-07 TTGAAAGACA GCGCCACCTACTGTCC ATCAAGAGAC chr22_KI270731v1_random: - 15 1.91e-07 CTGGTTTGGG GCGCCCTCGGGTGGCC ACATAAAAAA chr9:11171-11671 + 84 2.56e-07 tagtggtggc acgccgcctgctggca g chr6:28838789-28839289 + 51 4.04e-07 CCGCCAGATC GCGCCCCCTTTCGGGC AGAATCCGCT chr6:31958779-31959279 + 24 4.41e-07 GGTAACCAAG GCGGCCCCAGGCGCGC ACTTCCGCCC chr16:14974914-14975414 - 63 5.78e-07 CATGGCTGAG GCGGCCGGTGGTGGCC TGGCGGTCCC chr4:189940531-189941031 - 57 6.92e-07 GGGAGCTACG GCGGCCGCAGAGGGCC AAAAGGCATC chr19:41641826-41642326 - 47 9.65e-07 CGATGCTCCT ACGCCCTCTAGTGGTC AGAGCTGGGA chr17:45371624-45372124 + 56 1.52e-06 CAGCTCAGGA ACGCCCGCTCGCGGGA TGAGGCTGCG chr1:41360979-41361479 - 70 1.76e-06 GCAAGCAACA GCGCCGCCTACGGAGC AGGGGCGGAG chr12:12267153-12267653 + 24 1.89e-06 CGCTCTTTGT GCGGCCGCCGCCGGCA GGGCCAGGTG chr21:32771889-32772389 - 39 2.53e-06 CACTGCAGCA GCGCCGTCTGAGGGAC AACAGAGCCT chr6:28953072-28953572 + 41 4.25e-06 tgagactgac gcgctgcctactgcgc taaggaggcA chr6:31902122-31902622 + 84 1.11e-05 cccgcagcgc gcgcgcgcacccgTTC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCCCTGSYGGSC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:36856304-36856804 1.6e-09 50_[+10]_34 chr14:106663901-10666440 2.1e-09 31_[+10]_53 chr1:155250604-155251104 3.6e-09 21_[-10]_63 chr6:30877646-30878146 2.4e-08 41_[+10]_43 chr3:61564496-61564996 3.6e-08 15_[-10]_69 chr6:31196901-31197401 9.8e-08 32_[-10]_52 chr6:30672891-30673391 1.2e-07 49_[+10]_35 chr6:32984736-32985236 1.4e-07 44_[+10]_40 chr6:30717368-30717868 1.9e-07 15_[+10]_69 chr6:30130978-30131478 1.9e-07 31_[+10]_53 chr22_KI270731v1_random: 1.9e-07 14_[-10]_70 chr9:11171-11671 2.6e-07 83_[+10]_1 chr6:28838789-28839289 4e-07 50_[+10]_34 chr6:31958779-31959279 4.4e-07 23_[+10]_61 chr16:14974914-14975414 5.8e-07 62_[-10]_22 chr4:189940531-189941031 6.9e-07 56_[-10]_28 chr19:41641826-41642326 9.7e-07 46_[-10]_38 chr17:45371624-45372124 1.5e-06 55_[+10]_29 chr1:41360979-41361479 1.8e-06 69_[-10]_15 chr12:12267153-12267653 1.9e-06 23_[+10]_61 chr21:32771889-32772389 2.5e-06 38_[-10]_46 chr6:28953072-28953572 4.3e-06 40_[+10]_44 chr6:31902122-31902622 1.1e-05 83_[+10]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCCCTGSYGGSC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCCCCTGSYGGSC width=16 seqs=23 chr22:36856304-36856804 ( 51) GCGCCCCCTGGCGGTC 1 chr14:106663901-10666440 ( 32) GCGCCCCCTGGTGTCC 1 chr1:155250604-155251104 ( 22) GCGCCCCCTGCCGCCC 1 chr6:30877646-30878146 ( 42) GCGCCCCCAAGTGGCC 1 chr3:61564496-61564996 ( 16) GCGCCCCCTGAGGTCC 1 chr6:31196901-31197401 ( 33) GCGCCGCCTCGCGTCC 1 chr6:30672891-30673391 ( 50) ACGCCCCCTGATGGTC 1 chr6:32984736-32985236 ( 45) GCGCCACCTGTTGGGC 1 chr6:30717368-30717868 ( 16) GCGCCAGCTGCCGGCA 1 chr6:30130978-30131478 ( 32) GCGCCACCTACTGTCC 1 chr22_KI270731v1_random: ( 15) GCGCCCTCGGGTGGCC 1 chr9:11171-11671 ( 84) ACGCCGCCTGCTGGCA 1 chr6:28838789-28839289 ( 51) GCGCCCCCTTTCGGGC 1 chr6:31958779-31959279 ( 24) GCGGCCCCAGGCGCGC 1 chr16:14974914-14975414 ( 63) GCGGCCGGTGGTGGCC 1 chr4:189940531-189941031 ( 57) GCGGCCGCAGAGGGCC 1 chr19:41641826-41642326 ( 47) ACGCCCTCTAGTGGTC 1 chr17:45371624-45372124 ( 56) ACGCCCGCTCGCGGGA 1 chr1:41360979-41361479 ( 70) GCGCCGCCTACGGAGC 1 chr12:12267153-12267653 ( 24) GCGGCCGCCGCCGGCA 1 chr21:32771889-32772389 ( 39) GCGCCGTCTGAGGGAC 1 chr6:28953072-28953572 ( 41) GCGCTGCCTACTGCGC 1 chr6:31902122-31902622 ( 84) GCGCGCGCACCCGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCCCTGSYGGSC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50915 bayes= 12.1761 E= 9.2e-006 -65 -1117 186 -1117 -1117 214 -1117 -1117 -1117 -1117 214 -1117 -1117 186 -39 -1117 -1117 200 -238 -264 -106 152 -7 -1117 -1117 142 20 -106 -1117 207 -238 -1117 -65 -238 -238 144 -33 -80 142 -264 -65 61 78 -165 -1117 78 -39 67 -1117 -1117 214 -1117 -264 -80 142 -33 -264 120 20 -65 -65 186 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCCCTGSYGGSC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 23 E= 9.2e-006 0.173913 0.000000 0.826087 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.826087 0.173913 0.000000 0.000000 0.913043 0.043478 0.043478 0.130435 0.652174 0.217391 0.000000 0.000000 0.608696 0.260870 0.130435 0.000000 0.956522 0.043478 0.000000 0.173913 0.043478 0.043478 0.739130 0.217391 0.130435 0.608696 0.043478 0.173913 0.347826 0.391304 0.086957 0.000000 0.391304 0.173913 0.434783 0.000000 0.000000 1.000000 0.000000 0.043478 0.130435 0.608696 0.217391 0.043478 0.521739 0.260870 0.173913 0.173913 0.826087 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCCCTGSYGGSC MEME-10 regular expression -------------------------------------------------------------------------------- GCGCC[CG][CG]CT[GA][GC][TC]G[GT][CG]C -------------------------------------------------------------------------------- Time 2873.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:44772760-44773260 1.52e-01 71_[+7(2.45e-05)]_7 chr4:17262057-17262557 4.38e-03 45_[-1(4.65e-07)]_43 chr6:28838789-28839289 1.52e-02 50_[+10(4.04e-07)]_10_\ [+5(5.00e-05)]_8 chr6:31703080-31703580 6.28e-02 100 chr6:31826850-31827350 6.64e-01 100 chr10:133689862-13369036 1.65e-17 21_[-6(5.46e-17)]_1_[+2(1.09e-05)]_\ 2_[+7(9.38e-11)]_11 chr18:47821621-47822121 1.91e-01 35_[+1(7.91e-06)]_53 chr8:25003966-25004466 2.70e-02 57_[+2(7.38e-07)]_27 chr10:99659903-99660403 6.35e-02 29_[+1(5.29e-05)]_59 chrX:104191492-104191992 3.86e-01 61_[-1(7.91e-06)]_27 chr6:30914223-30914723 1.60e-01 8_[+10(2.62e-05)]_76 chr1:231628398-231628898 1.93e-02 24_[+9(7.35e-05)]_32_[+5(5.40e-06)]_\ 12 chr1:207455168-207455668 7.60e-01 100 chr17:4945157-4945657 1.40e-01 29_[-4(4.49e-05)]_10_[+5(5.79e-05)]_\ 36 chr17:1399868-1400368 6.72e-01 100 chr19:39684181-39684681 4.00e-01 64_[-4(1.69e-05)]_27 chr19:16569889-16570389 1.37e-03 56_[+5(1.45e-05)]_28 chr1:33433699-33434199 1.54e-01 53_[-4(4.80e-06)]_38 chr17:43544416-43544916 8.71e-02 61_[-5(6.58e-07)]_23 chr6:29649703-29650203 9.91e-01 100 chr3:48989557-48990057 2.46e-04 31_[+5(6.22e-05)]_12_[+4(4.49e-05)]_\ 16_[+5(8.78e-05)] chr17:36486290-36486790 4.15e-01 100 chrX:154541848-154542348 4.23e-02 40_[+4(1.28e-05)]_7_[-5(2.45e-05)]_\ 28 chr7:133572498-133572998 1.02e-01 81_[+1(7.73e-05)]_7 chr14:37001123-37001623 1.71e-02 62_[+1(1.94e-06)]_26 chr15:44728474-44728974 2.16e-01 100 chr19:41563298-41563798 4.28e-01 100 chr11:45880053-45880553 1.62e-01 53_[+6(4.18e-05)]_20 chr16:80721211-80721711 3.02e-01 100 chr19:39813551-39814051 8.62e-01 100 chr19:44096101-44096601 9.27e-01 100 chr1:224622242-224622742 4.86e-01 100 chr4:138869142-138869642 3.45e-02 69_[-1(3.27e-07)]_19 chr13:39148366-39148866 1.52e-01 73_[+4(4.80e-06)]_18 chr6:30556940-30557440 6.39e-01 100 chr17:46193149-46193649 1.22e-01 8_[+10(6.03e-05)]_76 chr1:17724110-17724610 1.66e-04 25_[+1(9.31e-06)]_63 chr8:38150730-38151230 1.96e-01 100 chr15:74790562-74791062 7.65e-02 24_[+4(3.44e-05)]_67 chr6:31958779-31959279 8.53e-02 23_[+10(4.41e-07)]_61 chr8:27617000-27617500 2.62e-02 17_[+4(2.43e-05)]_74 chr1:243114087-243114587 7.33e-02 100 chr2:160352329-160352829 2.63e-02 32_[+9(5.06e-05)]_31_[+4(2.76e-05)]_\ 12 chr7:30304903-30305403 1.69e-02 [+6(1.64e-06)]_29_[-1(2.30e-05)]_32 chr4:27005444-27005944 1.30e-04 35_[+1(1.94e-06)]_32_[+4(4.49e-05)]_\ 12 chr5:139537085-139537585 2.11e-01 100 chr6:127518577-127519077 2.17e-01 100 chr15:72228336-72228836 1.05e-01 81_[+4(4.49e-05)]_10 chr19:34358854-34359354 6.53e-01 100 chr16:15094174-15094674 8.40e-01 100 chr14_GL000225v1_random: 2.37e-17 [-2(2.37e-07)]_1_[+6(6.06e-14)]_1_\ [-7(2.17e-11)]_33 chr8:28004394-28004894 1.78e-02 82_[-5(3.09e-07)]_2 chrX:19003508-19004008 1.93e-01 100 chr7:81689824-81690324 1.13e-01 32_[-1(1.59e-06)]_56 chr3:61564496-61564996 1.78e-02 15_[-10(3.57e-08)]_69 chr16:21511440-21511940 2.90e-02 13_[-4(1.28e-05)]_78 chr10:121216745-12121724 2.67e-02 20_[-5(1.09e-05)]_11_[+2(1.70e-05)]_\ 37 chr8:120827449-120827949 4.91e-04 24_[-9(3.05e-05)]_17_[-2(6.27e-06)]_\ 9_[-1(7.24e-05)]_6 chr16:88782332-88782832 4.00e-04 53_[-8(1.68e-05)]_4 chr13:39773861-39774361 6.01e-02 47_[-1(6.18e-05)]_41 chr8:36573695-36574195 3.95e-02 24_[+2(8.17e-05)]_40_[+2(4.87e-06)]_\ 4 chr6:27633156-27633656 3.31e-02 18_[-4(1.28e-05)]_24_[-9(7.81e-05)]_\ 33 chr1:210311086-210311586 4.63e-01 100 chr6:30769540-30770040 1.35e-01 59_[+4(7.62e-05)]_32 chr10:43353399-43353899 1.35e-01 39_[+1(4.52e-05)]_24_[+4(2.43e-05)]_\ 16 chr14:106663901-10666440 1.99e-04 11_[+10(2.52e-05)]_4_\ [+10(2.14e-09)]_53 chr2:191899385-191899885 2.60e-01 71_[+4(3.10e-05)]_20 chr17:76125871-76126371 6.51e-01 100 chr19:50136249-50136749 4.00e-02 100 chr6:28589436-28589936 7.74e-01 100 chr14:54569383-54569883 8.57e-03 36_[-2(9.98e-08)]_48 chrX:31836379-31836879 2.93e-02 47_[+1(2.66e-06)]_41 chr19:19402959-19403459 1.40e-01 64_[-1(5.29e-05)]_24 chr1:119645819-119646319 5.41e-03 39_[+4(5.85e-05)]_16_[-1(3.19e-05)]_\ 24 chr6:30877646-30878146 4.87e-03 41_[+10(2.41e-08)]_43 chr11:3052073-3052573 1.08e-03 80_[-5(5.70e-09)]_4 chr14:34459884-34460384 4.75e-02 39_[-2(5.30e-06)]_45 chr9:8975936-8976436 1.75e-03 83_[+2(6.27e-06)]_1 chr15:65954202-65954702 4.67e-03 40_[+4(1.69e-05)]_16_[+6(5.76e-05)]_\ 8 chr17:46044307-46044807 8.64e-02 14_[-10(2.32e-05)]_70 chr17:42814832-42815332 5.29e-01 100 chr3:190231895-190232395 7.25e-04 6_[-7(5.94e-08)]_72 chr17:51703486-51703986 2.63e-01 100 chrX:53581204-53581704 1.51e-02 65_[-1(7.91e-06)]_23 chr6:82170347-82170847 5.12e-03 29_[-2(1.59e-05)]_5_[-1(4.09e-06)]_\ 38 chr22:29979158-29979658 4.00e-09 9_[-9(1.45e-08)]_7_[+4(3.10e-05)]_\ 28_[-5(1.08e-07)]_15 chr6:142323337-142323837 5.27e-01 11_[+4(4.49e-05)]_80 chr14_GL000225v1_random: 4.75e-15 17_[-2(5.96e-08)]_1_[+6(1.25e-14)]_\ [-7(1.02e-08)]_17 chr16:78404545-78405045 2.83e-01 46_[-2(6.81e-06)]_38 chr3:44594575-44595075 6.74e-01 100 chr1:11134335-11134835 6.45e-01 100 chr3:125917095-125917595 2.80e-03 65_[+4(2.43e-05)]_26 chr21:25709805-25710305 6.17e-03 61_[-2(4.31e-09)]_23 chr15:72315923-72316423 4.97e-02 15_[-5(1.15e-06)]_69 chr1:96865922-96866422 3.66e-01 100 chr17:46279669-46280169 1.19e-01 51_[+4(4.80e-06)]_40 chr12:104642-105142 1.60e-01 100 chr18:364380-364880 9.83e-04 53_[+2(4.02e-07)]_31 chr6:28953271-28953771 5.26e-02 30_[-2(5.16e-05)]_54 chr10:102426723-10242722 1.70e-07 [+9(5.22e-10)]_3_[+4(1.28e-05)]_72 chr10:78798989-78799489 1.08e-01 35_[+4(1.69e-05)]_56 chr17:37609245-37609745 5.78e-03 27_[+10(6.85e-06)]_57 chr19:56368194-56368694 4.11e-02 46_[+2(1.01e-05)]_38 chr10:102117282-10211778 3.99e-03 53_[+5(7.67e-05)]_31 chr1:144551550-144552050 7.55e-01 100 chr6:28881153-28881653 1.27e-01 26_[-10(3.45e-05)]_58 chr5:136811448-136811948 8.70e-02 58_[+4(2.43e-05)]_21_[-4(6.33e-05)]_\ 3 chr12:79634393-79634893 1.54e-03 12_[-1(2.08e-05)]_76 chr5:32507999-32508499 7.99e-02 69_[+2(3.40e-06)]_15 chr14_GL000225v1_random: 2.35e-19 3_[-6(5.55e-12)]_1_[+2(2.37e-07)]_2_\ [+7(5.22e-14)]_1_[-6(1.60e-14)]_1 chr4:119625739-119626239 7.04e-03 23_[-9(1.18e-05)]_31_[+1(1.23e-05)]_\ 18 chr17:59894145-59894645 9.54e-01 100 chr6:31902122-31902622 5.91e-02 49_[+5(7.36e-06)]_18_\ 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chr8:120861301-120861801 5.73e-01 100 chr16:23941896-23942396 4.02e-01 100 chr6:30707255-30707755 4.51e-01 100 chr19:47253338-47253838 1.04e-04 29_[+9(1.36e-08)]_3_[+4(1.28e-05)]_\ 43 chr3:157051033-157051533 1.01e-02 61_[-1(1.15e-07)]_27 chr1:143264417-143264917 3.28e-01 23_[+2(7.31e-05)]_61 chr19:39824424-39824924 5.99e-01 100 chr2:12965346-12965846 1.13e-01 48_[-4(4.80e-06)]_43 chr12:26112743-26113243 3.70e-02 47_[-4(4.49e-05)]_2_[+1(7.73e-05)]_\ 3_[-6(6.24e-05)] chr7:81716140-81716640 6.63e-03 65_[-2(1.28e-06)]_19 chr11:3049790-3050290 2.70e-01 100 chr6:32177352-32177852 1.17e-01 100 chr5:149586881-149587381 2.02e-02 71_[+4(4.80e-06)]_20 chr19:39032951-39033451 8.07e-06 50_[-4(1.28e-05)]_3_[-9(6.41e-09)]_\ 22 chr2:61288007-61288507 8.22e-02 21_[-2(2.84e-06)]_63 chr19:41595171-41595671 9.29e-02 45_[+4(5.85e-05)]_46 chr6:111809195-111809695 3.75e-02 55_[+4(4.49e-05)]_36 chr6:28587112-28587612 6.46e-02 43_[-10(4.44e-05)]_41 chr8:140796903-140797403 1.52e-01 29_[+4(4.80e-06)]_62 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chr5:41747193-41747693 3.56e-03 40_[-5(2.61e-07)]_44 chr17:1080693-1081193 4.88e-03 59_[+4(3.44e-05)]_12_[+5(9.00e-06)]_\ 4 chr3:168883091-168883591 3.92e-04 48_[+2(3.10e-09)]_36 chr1:234977852-234978352 1.24e-03 35_[-5(8.80e-08)]_49 chr6:6467240-6467740 8.47e-04 21_[-1(1.11e-05)]_31_[-2(2.41e-05)]_\ 20 chr16:29943427-29943927 8.28e-02 26_[-5(9.00e-06)]_58 chr2:169569890-169570390 3.82e-03 60_[+2(1.35e-07)]_24 chr10:31646516-31647016 3.97e-05 4_[+4(1.28e-05)]_35_[-2(9.32e-07)]_\ 36 chr20:1430074-1430574 1.76e-02 41_[+1(1.11e-05)]_47 chr10:6141072-6141572 1.92e-02 45_[+7(6.26e-05)]_33 chr14_GL000225v1_random: 6.31e-18 5_[-2(2.37e-07)]_1_[+6(1.60e-14)]_1_\ [-7(2.02e-13)]_2_[-2(2.37e-07)]_10 chr10:77162540-77163040 6.32e-02 28_[-2(6.27e-06)]_56 chr16:70066718-70067218 5.82e-01 100 chr10:113524488-11352498 2.38e-02 38_[+1(2.66e-06)]_50 chr17:26619784-26620284 5.93e-17 34_[+8(6.33e-26)]_23 chr5:62233352-62233852 4.84e-02 12_[+1(9.58e-05)]_18_[-4(1.28e-05)]_\ 8_[+4(3.10e-05)]_32 chr11:126060729-12606122 5.26e-01 100 chr15:69760808-69761308 5.46e-01 100 chr17:44021163-44021663 5.77e-02 61_[+1(1.34e-05)]_27 chrY:11327418-11327918 4.48e-12 6_[-6(1.12e-07)]_1_[+2(2.37e-07)]_2_\ [+7(2.84e-10)]_26 chr9:18394811-18395311 1.83e-05 29_[-2(5.77e-06)]_18_[+7(1.80e-08)]_\ 15 chr6:28589230-28589730 5.16e-01 100 chr16:15021454-15021954 2.16e-01 29_[-4(3.44e-05)]_62 chr17:40314533-40315033 8.83e-04 18_[-5(1.31e-07)]_18_[+4(2.76e-05)]_\ 26_[+4(2.43e-05)]_4 chr6:28747607-28748107 4.98e-02 72_[-5(1.73e-05)]_12 chr6:28795800-28796300 5.48e-01 100 chr7:105026679-105027179 1.19e-02 24_[+1(7.91e-06)]_64 chr3:20083198-20083698 1.74e-01 38_[+1(1.59e-06)]_50 chr17:46742759-46743259 8.23e-04 20_[+5(3.47e-06)]_29_[-2(1.59e-05)]_\ 19 chr10:75622452-75622952 2.97e-02 35_[-2(7.73e-05)]_9_[-1(2.95e-05)]_\ 28 chr1:199490764-199491264 1.03e-04 55_[+4(2.43e-05)]_14_[+1(1.94e-06)]_\ 10 chr6:30907758-30908258 2.25e-01 100 chr5:61328038-61328538 2.40e-03 19_[-1(1.69e-05)]_54_[+4(1.28e-05)]_\ 6 chr19:34218189-34218689 6.46e-01 100 chr1:226102929-226103429 2.43e-01 60_[-1(7.24e-05)]_28 chr13:99145422-99145922 5.25e-01 31_[-1(1.11e-05)]_57 chr13:45194225-45194725 6.10e-01 100 chr19:30394410-30394910 1.48e-01 47_[+1(2.74e-05)]_41 chr11:46914239-46914739 5.86e-03 50_[-1(1.59e-06)]_38 chr2:134919311-134919811 3.00e-03 47_[+1(3.27e-07)]_41 chr7:117135399-117135899 4.81e-02 39_[-1(4.65e-07)]_49 chr1:234974976-234975476 1.67e-01 45_[-1(8.97e-05)]_43 chr1_KI270713v1_random:2 9.31e-01 100 chr3:126208507-126209007 1.67e-02 47_[-5(3.40e-05)]_37 chr5:41788974-41789474 9.20e-02 3_[+1(3.19e-05)]_31_[-1(4.09e-06)]_\ 42 chr17:77233782-77234282 5.11e-01 100 chr1:30811134-30811634 1.58e-01 49_[+1(2.74e-05)]_39 chr8:26151267-26151767 1.30e-01 54_[-1(1.05e-06)]_34 chr8:7109180-7109680 5.43e-02 74_[-4(4.80e-06)]_17 chr17:41860481-41860981 2.00e-03 43_[-2(3.10e-09)]_41 chr1:157044254-157044754 8.30e-03 27_[-2(2.13e-06)]_57 chr9:3410429-3410929 4.50e-02 37_[+2(4.05e-05)]_47 chr1:115668990-115669490 1.57e-03 34_[-4(1.28e-05)]_57 chr9:11171-11671 4.75e-03 33_[+5(2.25e-05)]_34_\ [+10(2.56e-07)]_1 chr6:31777110-31777610 9.14e-05 50_[-4(2.43e-05)]_1_[+5(1.78e-08)]_\ 24 chr7:101941959-101942459 2.29e-02 13_[-4(5.85e-05)]_26_[+2(2.13e-06)]_\ 36 chr6:170280345-170280845 6.24e-04 39_[+2(1.58e-06)]_7_[+10(5.64e-05)]_\ 22 chr5:138306952-138307452 2.99e-03 36_[+2(3.00e-08)]_48 chr7:141737995-141738495 2.10e-01 100 chr17:36133558-36134058 5.19e-04 7_[-4(1.28e-05)]_29_[-2(1.36e-08)]_\ 39 chr12:111819779-11182027 3.02e-02 52_[+1(3.75e-05)]_36 chr7:69609969-69610469 2.25e-01 100 chr8:37229054-37229554 2.97e-02 21_[-4(5.85e-05)]_70 chrX:150325312-150325812 1.14e-01 3_[+1(5.78e-05)]_8_[+2(4.58e-05)]_\ 61 chr5:50668042-50668542 8.66e-03 34_[+1(2.30e-05)]_54 chr7:114481939-114482439 1.20e-01 16_[-1(7.73e-05)]_72 chr10:63267226-63267726 8.09e-02 37_[+1(1.59e-06)]_51 chr7:99699102-99699602 2.17e-03 1_[+1(4.66e-06)]_22_[+4(1.69e-05)]_\ 56 chr7:129332673-129333173 6.48e-02 53_[-1(3.49e-05)]_18_[+4(5.85e-05)]_\ 8 chr15:60255408-60255908 6.45e-03 78_[-1(1.15e-07)]_10 chr22:30017315-30017815 1.27e-02 40_[+2(2.36e-06)]_12_[-4(1.69e-05)]_\ 23 chr16:19517270-19517770 5.06e-03 8_[+2(5.77e-06)]_76 chr7:99751548-99752048 5.94e-03 15_[+1(4.66e-06)]_22_[+4(1.69e-05)]_\ 42 chr19:41501316-41501816 1.30e-03 31_[-2(1.04e-06)]_1_[-5(1.09e-05)]_\ 36 chr14_GL000225v1_random: 2.01e-16 4_[-7(2.40e-12)]_2_[-2(2.37e-07)]_1_\ [+6(1.51e-13)]_[-7(1.89e-07)]_6 chr7:103100300-103100800 4.85e-06 47_[-2(4.38e-10)]_37 chr17:26603654-26604154 3.01e-13 57_[+8(1.76e-22)] chr14_GL000225v1_random: 3.12e-15 1_[-7(7.23e-05)]_[-2(8.01e-06)]_1_\ [+6(4.74e-12)]_[-7(9.96e-13)]_11 chr7:104932218-104932718 6.66e-04 56_[-2(8.30e-07)]_28 chr19:50388494-50388994 1.49e-02 70_[-1(1.83e-05)]_18 chr7:94446292-94446792 5.12e-02 17_[-1(3.27e-07)]_71 chr8:37256709-37257209 5.16e-02 52_[+1(4.65e-07)]_36 chr1:125179940-125180440 9.12e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: surya ********************************************************************************