# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:22 PDT 2018)
#   negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:22 PDT 2018)
#        host: surya
#        when: Mon Jun 11 07:47:21 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.267 C 0.236 G 0.232 T 0.265


MOTIF RCTATTTA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RCTATTTA   TAAATAGY        112          5   5.5e-030   1.8e-025
#         ACTATTTA   TAAATAGT         91          3   2.2e-025   7.0e-021
#         GCTATTTA   TAAATAGC         21          2   2.9e-005   9.2e-001

letter-probability matrix: alength= 4 w= 8 nsites= 113 E= 1.8e-025
0.805310 0.000000 0.194690 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGASTCAB DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGASTCAB   VTGASTCA         98          5   1.8e-025   5.8e-021
#         TGACTCAT   ATGAGTCA         41          0   2.2e-013   7.2e-009
#         TGAGTCAT   ATGACTCA         46          2   1.8e-012   5.9e-008
#         TGAGTCAC   GTGACTCA         28          0   2.7e-009   8.7e-005
#         TGACTCAC   GTGAGTCA         24          1   6.2e-007   2.0e-002
#         TGACTCAG   CTGAGTCA         25          2   2.3e-006   7.3e-002
#         TGAGTCAG   CTGACTCA         23          3   3.7e-005   1.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 105 E= 5.8e-021
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.476190 0.523810 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.238095 0.257143 0.504762


MOTIF AYTGATK DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AYTGATK    MATCART        124         41   1.2e-012   3.9e-008
#          ATTGATG    CATCAAT         26          5   8.0e-005   2.5e+000
#          ACTGATG    CATCAGT         39         13   1.5e-004   4.9e+000
#          ACTGATT    AATCAGT         27          7   3.5e-004   1.1e+001
#          ATTGATT    AATCAAT         40         17   1.3e-003   4.0e+001

letter-probability matrix: alength= 4 w= 7 nsites= 136 E= 3.9e-008
1.000000 0.000000 0.000000 0.000000
0.000000 0.507353 0.000000 0.492647
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.485294 0.514706


MOTIF ATCABC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ATCABC     GVTGAT        140         74   4.0e-007   1.3e-002
#           ATCATC     GATGAT         57         29   1.2e-003   3.7e+001
#           ATCACC     GGTGAT         44         23   5.7e-003   1.8e+002
#           ATCAGC     GCTGAT         51         29   7.3e-003   2.3e+002

letter-probability matrix: alength= 4 w= 6 nsites= 171 E= 1.3e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.327485 0.309942 0.362573
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 19.72 seconds