Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
YTGGCMMKSTGCCAAG 16 CTGGCACGGTGCCAAG
HTBWTAAATAGTYY 14 CTTTTAAATAGTTC
KGGYAATCADTT 12 GGGCAATCAATT
GCGCCCYCTNSYGGCS 16 GCGCCCCCTGGCGGCC
CYBTGSCWSVRSYGGGATTCGAACCMRSGACCYCHKG 37 CCGTGGCAGGGGCGGGATTCGAACCCGCGACCTCTGG
RRTGACTCA 9 GATGACTCA
CCGSNSCSYKBCBSCBSCGSSG 22 CCGCCGCCTTTCGGCGCCGGCG
TGCCTCMCAGGGAAGCACTGMTCCCCCAGVT 31 TGCCTCCCAGGGAAGCACTGCTCCCCCAGGT
CCGGAAGTG 9 CCGGAAGTG
CAGCRCCMCCTRCTGG 16 CAGCGCCCCCTGCTGG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.236 C 0.264 G 0.264 T 0.236

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
HTBWTAAATAGTYY MEME-2 chr5 + 44808658 44808671 1.05e-08 0.00607 TTTATAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr9 + 386079 386092 2.56e-08 0.00719 TTCTTAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr2 + 134919557 134919570 4.02e-08 0.00719 TTGATAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr6 + 25418914 25418927 4.96e-08 0.00719 CTCATAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr17 - 40108552 40108565 6.45e-08 0.00748 TTTTTAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr10 + 5861495 5861508 1.37e-07 0.0124 TATATAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr20 + 32270837 32270850 1.62e-07 0.0124 CTAATAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr1 + 214469443 214469456 1.87e-07 0.0124 CTGTTAAATAGTCT
HTBWTAAATAGTYY MEME-2 chr12 - 57847184 57847197 2.32e-07 0.0124 CTTTTAAATAGTTG
HTBWTAAATAGTYY MEME-2 chr1 + 197180574 197180587 2.44e-07 0.0124 CTGTTAAATAGTTA
HTBWTAAATAGTYY MEME-2 chr17 + 27236945 27236958 2.68e-07 0.0124 TTTGTAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr8 + 140491824 140491837 2.78e-07 0.0124 TACATAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr1 + 223819903 223819916 2.78e-07 0.0124 cccttaaatagttt
HTBWTAAATAGTYY MEME-2 chr19 + 18349792 18349805 3.47e-07 0.0133 CTTTTAAATATTTT
HTBWTAAATAGTYY MEME-2 chr8 + 60807763 60807776 3.47e-07 0.0133 CTTTTAAATATTTT
HTBWTAAATAGTYY MEME-2 chr1 + 29133782 29133795 3.67e-07 0.0133 TTGTTAAATAGTTG
HTBWTAAATAGTYY MEME-2 chr22 + 40070915 40070928 4.35e-07 0.0135 actataaatagttt
HTBWTAAATAGTYY MEME-2 chr15 + 38354434 38354447 4.39e-07 0.0135 TTCTTAAATATTTC
HTBWTAAATAGTYY MEME-2 chr1 - 46522329 46522342 4.63e-07 0.0135 TTATTAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr1 - 223811921 223811934 4.65e-07 0.0135 TTATTAAATAGTCT
HTBWTAAATAGTYY MEME-2 chr12 + 1606000 1606013 5.12e-07 0.0139 TTGATAAATATTTC
HTBWTAAATAGTYY MEME-2 chr11 + 65962217 65962230 5.28e-07 0.0139 CTATTAAATAGTCT
HTBWTAAATAGTYY MEME-2 chr5 + 71830834 71830847 5.71e-07 0.0141 TCTATAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr5 - 271348 271361 5.91e-07 0.0141 TGTATAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr15 + 69146285 69146298 6.07e-07 0.0141 ACCTTAAATAGTTC
HTBWTAAATAGTYY MEME-2 chrX + 73913675 73913688 6.96e-07 0.0147 CCTTTAAATAGTTA
HTBWTAAATAGTYY MEME-2 chr15 - 99306370 99306383 6.96e-07 0.0147 CCTTTAAATAGTTA
HTBWTAAATAGTYY MEME-2 chr10 - 68901071 68901084 7.1e-07 0.0147 AACATAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr1 + 151070568 151070581 8.92e-07 0.0178 CCGTTAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr10 - 116891327 116891340 9.78e-07 0.0187 GTGTTAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr11 + 85628348 85628361 9.99e-07 0.0187 CTGATAAATAGTCA
HTBWTAAATAGTYY MEME-2 chr19 + 30648595 30648608 1.12e-06 0.0203 GTCATAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr1 + 232620944 232620957 1.3e-06 0.0229 CTTTTAAATATTTA
HTBWTAAATAGTYY MEME-2 chr1 + 89720000 89720013 1.76e-06 0.029 AAGTTAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr1 + 39398621 39398634 1.85e-06 0.029 TGATTAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr6 + 155177569 155177582 1.85e-06 0.029 AGCTTAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr1 - 109149404 109149417 1.85e-06 0.029 TGATTAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr17 - 20646950 20646963 1.95e-06 0.0297 CACTTAAATATTTC
HTBWTAAATAGTYY MEME-2 chr17 + 78975249 78975262 2.04e-06 0.0304 ctgctaaatagttt
HTBWTAAATAGTYY MEME-2 chr5 - 124908752 124908765 2.36e-06 0.0339 CAGTTAAATAGCTT
HTBWTAAATAGTYY MEME-2 chr5 + 113218011 113218024 2.43e-06 0.0339 ACTGTAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr13 - 112102543 112102556 2.46e-06 0.0339 GCTATAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr3 + 8444562 8444575 2.73e-06 0.0368 TTGGTAAATATTTC
HTBWTAAATAGTYY MEME-2 chr1 + 41003669 41003682 2.88e-06 0.0378 tatgtaaatagtct
HTBWTAAATAGTYY MEME-2 chr1 - 84604490 84604503 3.01e-06 0.0378 GAGTTAAATAGTCT
HTBWTAAATAGTYY MEME-2 chr7 - 7681702 7681715 3.08e-06 0.0378 TTTTTAAATAGTAG
HTBWTAAATAGTYY MEME-2 chr3 - 14125880 14125893 3.08e-06 0.0378 GGCTTAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr10 - 22912732 22912745 3.17e-06 0.0378 ACCATAAATAGTTG
HTBWTAAATAGTYY MEME-2 chr17 - 15829018 15829031 3.26e-06 0.0378 CATTTAAATATTCC
HTBWTAAATAGTYY MEME-2 chr8 - 120859860 120859873 3.26e-06 0.0378 GTATTAAATAGTTG
HTBWTAAATAGTYY MEME-2 chr10 - 7433500 7433513 3.42e-06 0.0389 ATATTAAATAGTCA
HTBWTAAATAGTYY MEME-2 chr4 + 53012137 53012150 3.58e-06 0.0392 ATCCTAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr6 + 155177341 155177354 3.58e-06 0.0392 ATCCTAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr1 - 232620948 232620961 3.8e-06 0.0409 CATTTAAATATTTA
HTBWTAAATAGTYY MEME-2 chr17 - 20227062 20227075 4.23e-06 0.0446 TACTTAAATATTCC
HTBWTAAATAGTYY MEME-2 chr17 + 7514870 7514883 4.89e-06 0.0506 gtcataaataattt
HTBWTAAATAGTYY MEME-2 chr1 + 83857517 83857530 5.13e-06 0.0522 ACTTTAAATAATTC
HTBWTAAATAGTYY MEME-2 chr5 + 71831001 71831014 5.42e-06 0.0542 TCTGTAAATATTTC
HTBWTAAATAGTYY MEME-2 chr5 + 111092054 111092067 5.8e-06 0.0563 ttttTAAATAATCA
HTBWTAAATAGTYY MEME-2 chr15 - 38354590 38354603 5.82e-06 0.0563 CACATAAATAGCCC
HTBWTAAATAGTYY MEME-2 chr6 + 41767405 41767418 6.34e-06 0.0603 CTGATAAATATTCG
HTBWTAAATAGTYY MEME-2 chr13 - 75437838 75437851 6.84e-06 0.064 TCTTCAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr6 + 45445900 45445913 7.26e-06 0.0653 GTTTTAAATATCTT
HTBWTAAATAGTYY MEME-2 chr1 + 89719832 89719845 7.26e-06 0.0653 TCAGTAAATAGTCT
HTBWTAAATAGTYY MEME-2 chr17 + 7822807 7822820 7.31e-06 0.0653 TGAGTAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr3 + 177714575 177714588 7.52e-06 0.0656 TTGTTAAATAGGCT
HTBWTAAATAGTYY MEME-2 chr6 - 16332142 16332155 7.58e-06 0.0656 CTGGTAAATAGCCC
HTBWTAAATAGTYY MEME-2 chr11 + 106078283 106078296 7.84e-06 0.0669 ctgttaaatatccc
HTBWTAAATAGTYY MEME-2 chr5 + 174371638 174371651 8.1e-06 0.0672 CTCCTAAATATTTT
HTBWTAAATAGTYY MEME-2 chrX + 13647773 13647786 8.17e-06 0.0672 TTGATAAATAGGCC
HTBWTAAATAGTYY MEME-2 chr5 + 66757366 66757379 8.23e-06 0.0672 CTATTAAATAGTAG
HTBWTAAATAGTYY MEME-2 chr1 + 221284251 221284264 8.73e-06 0.0703 ctcataaatatcct
HTBWTAAATAGTYY MEME-2 chr12 - 106780132 106780145 9.33e-06 0.0741 AACATAAATAGCCT
HTBWTAAATAGTYY MEME-2 chr21 + 16420439 16420452 9.79e-06 0.0749 GCATTAAATATTTT
HTBWTAAATAGTYY MEME-2 chr12 + 54040033 54040046 9.79e-06 0.0749 CCCTCAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr20 + 33401741 33401754 9.98e-06 0.0749 gtgtcaaatagttc
HTBWTAAATAGTYY MEME-2 chr4 + 183816781 183816794 9.98e-06 0.0749 ATATTAAATAATCC
HTBWTAAATAGTYY MEME-2 chr12 + 53501627 53501640 1.01e-05 0.0749 GCTCTAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr5 - 93608062 93608075 1.06e-05 0.0778 CCCACAAATAGTTC
HTBWTAAATAGTYY MEME-2 chr1 - 212488596 212488609 1.11e-05 0.0803 TTGGTAAATAGTAA
HTBWTAAATAGTYY MEME-2 chr12 - 2198394 2198407 1.14e-05 0.0817 CATTTAAATAGCCG
HTBWTAAATAGTYY MEME-2 chr22 - 40071053 40071066 1.2e-05 0.0846 AAAGTAAATAGTCT
HTBWTAAATAGTYY MEME-2 chr6 - 37240566 37240579 1.28e-05 0.0892 CAATTAAATAGCTG
HTBWTAAATAGTYY MEME-2 chr5 - 124706878 124706891 1.31e-05 0.0905 GTGATAAATAGCCA
HTBWTAAATAGTYY MEME-2 chr3 + 194350535 194350548 1.35e-05 0.0905 atgataaataggct
HTBWTAAATAGTYY MEME-2 chr5 + 88516727 88516740 1.36e-05 0.0905 CACATAAATATTAC
HTBWTAAATAGTYY MEME-2 chr1 + 209884739 209884752 1.36e-05 0.0905 CTGTTAAATAGTGT
HTBWTAAATAGTYY MEME-2 chr1 - 229221322 229221335 1.38e-05 0.0911 AGTATAAATAGCCT
HTBWTAAATAGTYY MEME-2 chr1 - 24635630 24635643 1.41e-05 0.0921 TCTATAAATAATCA
HTBWTAAATAGTYY MEME-2 chr4 - 38621115 38621128 1.44e-05 0.0925 AAGTTAAATAATTA
HTBWTAAATAGTYY MEME-2 chr3 + 169657786 169657799 1.47e-05 0.0937 CTTGTAAACAGTTT
HTBWTAAATAGTYY MEME-2 chr15 + 78322481 78322494 1.57e-05 0.0978 TAATTAAATATTCA
HTBWTAAATAGTYY MEME-2 chr10 + 94070206 94070219 1.57e-05 0.0978 ATTTTAAACAGTTA
HTBWTAAATAGTYY MEME-2 chr10 - 114208611 114208624 1.59e-05 0.0978 GTCATAAATAGCAC
HTBWTAAATAGTYY MEME-2 chr3 - 55693121 55693134 1.61e-05 0.0983 GATATAAATAGTAA
HTBWTAAATAGTYY MEME-2 chr1 + 25998398 25998411 1.66e-05 0.1 TCCTCAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr12 + 56193099 56193112 1.69e-05 0.101 TATTTAAATATCTG
HTBWTAAATAGTYY MEME-2 chr19 + 33177009 33177022 1.76e-05 0.104 ATGGTAAATAGTAA
HTBWTAAATAGTYY MEME-2 chr17 + 7822759 7822772 1.84e-05 0.107 acaataaatatttg
HTBWTAAATAGTYY MEME-2 chr4 + 53012013 53012026 1.84e-05 0.107 ttttttAATAGCTT
HTBWTAAATAGTYY MEME-2 chr14 - 65472462 65472475 1.87e-05 0.107 ATAGTAAATAGCCT
HTBWTAAATAGTYY MEME-2 chr8 - 42458230 42458243 1.89e-05 0.107 CTGTTAAACATTTC
HTBWTAAATAGTYY MEME-2 chr1 - 173714902 173714915 1.91e-05 0.108 TTCTTAAATCGTTC
HTBWTAAATAGTYY MEME-2 chr11 + 27202113 27202126 1.99e-05 0.111 ctcataaaaagttt
HTBWTAAATAGTYY MEME-2 chr8 + 133382070 133382083 2.02e-05 0.111 gttttaaacagtCT
HTBWTAAATAGTYY MEME-2 chr19 - 32373721 32373734 2.04e-05 0.112 CAAATAAATAATTG
HTBWTAAATAGTYY MEME-2 chr17 + 28599671 28599684 2.12e-05 0.115 actataaatatccc
HTBWTAAATAGTYY MEME-2 chr15 + 99306112 99306125 2.18e-05 0.117 AAATTAAATATCTT
HTBWTAAATAGTYY MEME-2 chr5 - 66757363 66757376 2.2e-05 0.117 CTATTTAATAGTCC
HTBWTAAATAGTYY MEME-2 chr12 - 71840762 71840775 2.23e-05 0.118 CTGTCAAATAATTC
HTBWTAAATAGTYY MEME-2 chr12 + 69476424 69476437 2.4e-05 0.125 AAGATAAATAACTC
HTBWTAAATAGTYY MEME-2 chr7 - 101883222 101883235 2.42e-05 0.125 AACATAAATAACTT
HTBWTAAATAGTYY MEME-2 chr2 - 55015001 55015014 2.49e-05 0.126 TTTATAAACAATTT
HTBWTAAATAGTYY MEME-2 chr10 + 22912668 22912681 2.52e-05 0.126 CTTTTAAATAACAC
HTBWTAAATAGTYY MEME-2 chr10 - 76103664 76103677 2.52e-05 0.126 TAATTAAATAATCA
HTBWTAAATAGTYY MEME-2 chr12 - 71840421 71840434 2.53e-05 0.126 GAAATAAATATTTG
HTBWTAAATAGTYY MEME-2 chr1 - 202222565 202222578 2.63e-05 0.13 CCTCTAAATATTTA
HTBWTAAATAGTYY MEME-2 chr17 - 70661362 70661375 2.68e-05 0.132 AGGATAAATAGGTC
HTBWTAAATAGTYY MEME-2 chr15 - 70741644 70741657 2.71e-05 0.132 CAGTTAAATAGCAA
HTBWTAAATAGTYY MEME-2 chr6 - 27505793 27505806 2.73e-05 0.132 CTCCCAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr1 + 227563389 227563402 2.76e-05 0.132 TTTGTTAATAGTCT
HTBWTAAATAGTYY MEME-2 chr19 + 47289575 47289588 2.79e-05 0.133 gtgttaaatagcaa
HTBWTAAATAGTYY MEME-2 chr17 - 58391618 58391631 2.85e-05 0.135 CCTGTAAACAGTTC
HTBWTAAATAGTYY MEME-2 chr17 + 40560577 40560590 2.9e-05 0.136 TAAATAAATAGGTA
HTBWTAAATAGTYY MEME-2 chr2 + 170530266 170530279 2.94e-05 0.136 ATAATAAACAGTCC
HTBWTAAATAGTYY MEME-2 chr12 - 44949026 44949039 2.98e-05 0.137 CCCATTAATAGTCT
HTBWTAAATAGTYY MEME-2 chr3 + 64996202 64996215 3.03e-05 0.138 ACTGCAAATAGTTT
HTBWTAAATAGTYY MEME-2 chr5 - 154461641 154461654 3.13e-05 0.14 ACTTTAAATAGCAA
HTBWTAAATAGTYY MEME-2 chr7 + 128523666 128523679 3.13e-05 0.14 agtttaaataactt
HTBWTAAATAGTYY MEME-2 chr3 + 87298409 87298422 3.15e-05 0.14 TATTTTAATATTTT
HTBWTAAATAGTYY MEME-2 chr2 + 134919788 134919801 3.17e-05 0.14 TTCCTAAATATTAC
HTBWTAAATAGTYY MEME-2 chr15 + 65517908 65517921 3.21e-05 0.141 TCAATAAATAATAT
HTBWTAAATAGTYY MEME-2 chr1 - 234523548 234523561 3.26e-05 0.141 TCATTAAATAGGTG
HTBWTAAATAGTYY MEME-2 chr5 - 37717851 37717864 3.3e-05 0.141 TTTATTAATATTTA
HTBWTAAATAGTYY MEME-2 chr5 - 66757244 66757257 3.3e-05 0.141 AATACAAATATTTC
HTBWTAAATAGTYY MEME-2 chr1 + 164787890 164787903 3.34e-05 0.141 GGGTTAAATATCTT
HTBWTAAATAGTYY MEME-2 chr2 - 171703756 171703769 3.36e-05 0.141 AATTTAAATAACTA
HTBWTAAATAGTYY MEME-2 chr17 + 81394304 81394317 3.36e-05 0.141 AGTTTAAATATCCT
HTBWTAAATAGTYY MEME-2 chr6 + 149012049 149012062 3.55e-05 0.148 aTATTAAATATCCA
HTBWTAAATAGTYY MEME-2 chr4 + 183816809 183816822 3.57e-05 0.148 ATTTTAAAAAGTCC
HTBWTAAATAGTYY MEME-2 chr2 - 227818471 227818484 3.59e-05 0.148 GCCTTAAATATCTA
HTBWTAAATAGTYY MEME-2 chr1 - 209884986 209884999 3.73e-05 0.151 ACACTAAATATTTT
HTBWTAAATAGTYY MEME-2 chr15 + 71279411 71279424 3.73e-05 0.151 TGTATAAATAGTGT
HTBWTAAATAGTYY MEME-2 chr5 - 99900772 99900785 3.75e-05 0.151 AGAATAAATAATCT
HTBWTAAATAGTYY MEME-2 chr15 + 33126868 33126881 3.77e-05 0.151 CCCATAAATAACTG
HTBWTAAATAGTYY MEME-2 chr17 + 40108331 40108344 3.8e-05 0.151 CTCATAAACAGCCC
HTBWTAAATAGTYY MEME-2 chr2 + 55015007 55015020 3.84e-05 0.152 TTTATAAAAATTTT
HTBWTAAATAGTYY MEME-2 chr1 + 202222561 202222574 3.9e-05 0.152 AGGGTAAATATTTA
HTBWTAAATAGTYY MEME-2 chr10 + 112565813 112565826 3.95e-05 0.152 TTTTTAAATCTTTT
HTBWTAAATAGTYY MEME-2 chr9 - 386115 386128 3.97e-05 0.152 CCCGTTAATAGTTT
HTBWTAAATAGTYY MEME-2 chr17 - 7822763 7822776 3.97e-05 0.152 TTAACAAATATTTA
HTBWTAAATAGTYY MEME-2 chr11 + 65962442 65962455 3.97e-05 0.152 tcaataaatatgtt
HTBWTAAATAGTYY MEME-2 chr5 + 113218217 113218230 4.07e-05 0.154 AGGATAAATAACTC
HTBWTAAATAGTYY MEME-2 chr10 + 6669514 6669527 4.1e-05 0.154 TCCGCAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr5 - 99900561 99900574 4.19e-05 0.156 TCTGTAAATATCTG
HTBWTAAATAGTYY MEME-2 chr4 - 185096146 185096159 4.21e-05 0.156 TGAATTAATAGTTT
HTBWTAAATAGTYY MEME-2 chr12 + 56637098 56637111 4.45e-05 0.164 TCTGTAAACAGTCT
HTBWTAAATAGTYY MEME-2 chr2 - 171703631 171703644 4.5e-05 0.164 GGTTTAAATATCCT
HTBWTAAATAGTYY MEME-2 chr5 + 91314422 91314435 4.5e-05 0.164 TGTTTAAATAACTG
HTBWTAAATAGTYY MEME-2 chr19 - 38544681 38544694 4.58e-05 0.164 CTTTTAAAAAGTCA
HTBWTAAATAGTYY MEME-2 chr3 + 149752735 149752748 4.58e-05 0.164 AATATCaatagttc
HTBWTAAATAGTYY MEME-2 chr8 - 133382047 133382060 4.62e-05 0.164 CAGATAAACAGTCA
HTBWTAAATAGTYY MEME-2 chr12 + 71840635 71840648 4.62e-05 0.164 TTCATAAACAGCTG
HTBWTAAATAGTYY MEME-2 chr3 - 55693170 55693183 4.66e-05 0.165 ATCCTAAATATTAT
HTBWTAAATAGTYY MEME-2 chr12 + 63420464 63420477 4.73e-05 0.166 aaattaaataggtg
HTBWTAAATAGTYY MEME-2 chr14 + 24189211 24189224 4.76e-05 0.166 AACTTAAAAAGTTC
HTBWTAAATAGTYY MEME-2 chr19 + 33293297 33293310 4.87e-05 0.168 ATTTTAAATATCAG
HTBWTAAATAGTYY MEME-2 chr1 + 223819814 223819827 4.87e-05 0.168 tctgcaaatatttc
HTBWTAAATAGTYY MEME-2 chr5 + 111092070 111092083 4.9e-05 0.168 TGTTTAAATCGTTT
HTBWTAAATAGTYY MEME-2 chr11 - 65962201 65962214 5e-05 0.168 CTGGTAAACAGCTT
HTBWTAAATAGTYY MEME-2 chr1 + 223811924 223811937 5e-05 0.168 CTATTTAATAATTT
HTBWTAAATAGTYY MEME-2 chr1 + 225508562 225508575 5e-05 0.168 TTCTTAAACAATTA
HTBWTAAATAGTYY MEME-2 chr1 + 226333715 226333728 5e-05 0.168 tctttaaatattgt
HTBWTAAATAGTYY MEME-2 chr1 - 227563596 227563609 5.1e-05 0.169 GGGATAAATAGCCG
HTBWTAAATAGTYY MEME-2 chr2 + 158953938 158953951 5.1e-05 0.169 TTTTCAAATAATCA
HTBWTAAATAGTYY MEME-2 chr1 + 181127350 181127363 5.15e-05 0.17 ttttttaatagtag
HTBWTAAATAGTYY MEME-2 chr3 + 131503216 131503229 5.27e-05 0.173 CTTCTAAATagtgc
HTBWTAAATAGTYY MEME-2 chr8 + 133381877 133381890 5.32e-05 0.173 aatacaaatattcc
HTBWTAAATAGTYY MEME-2 chr5 - 149959338 149959351 5.36e-05 0.173 AGAATAAACAGTTT
HTBWTAAATAGTYY MEME-2 chr5 + 37717847 37717860 5.39e-05 0.173 ACAATAAATATTAA
HTBWTAAATAGTYY MEME-2 chr2 - 208025308 208025321 5.41e-05 0.173 ATTGTAAATATCCG
HTBWTAAATAGTYY MEME-2 chr10 - 22912867 22912880 5.53e-05 0.176 AAGATAAATAATAA
HTBWTAAATAGTYY MEME-2 chr7 - 140165516 140165529 5.59e-05 0.177 TCATTTAATATTTT
HTBWTAAATAGTYY MEME-2 chr17 - 2975390 2975403 5.64e-05 0.177 ATTTTAAATCTTTC
HTBWTAAATAGTYY MEME-2 chr6 - 27688576 27688589 5.64e-05 0.177 TAATCAAATAATTC
HTBWTAAATAGTYY MEME-2 chr17 - 80219520 80219533 5.71e-05 0.178 AACATAAACAGCTC
HTBWTAAATAGTYY MEME-2 chr1 + 16546158 16546171 5.8e-05 0.18 GTTATAAATATCAA
HTBWTAAATAGTYY MEME-2 chr15 + 66499159 66499172 5.87e-05 0.181 TTTTTAAATCATTC
HTBWTAAATAGTYY MEME-2 chr12 - 121405102 121405115 6.12e-05 0.188 AACCTAAATAATCT
HTBWTAAATAGTYY MEME-2 chr1 + 77412652 77412665 6.22e-05 0.19 CCAATAAATAAGTC
HTBWTAAATAGTYY MEME-2 chr5 - 32217815 32217828 6.38e-05 0.193 ATCTTTAATATTTG
HTBWTAAATAGTYY MEME-2 chr12 + 54040065 54040078 6.38e-05 0.193 TTTCTAAAAAGTTT
HTBWTAAATAGTYY MEME-2 chr10 + 61974840 61974853 6.41e-05 0.193 AGTGTAAACAGTTT
HTBWTAAATAGTYY MEME-2 chr1 + 235917851 235917864 6.48e-05 0.194 AAAGTAAATATTAT
HTBWTAAATAGTYY MEME-2 chr13 + 112102372 112102385 6.52e-05 0.194 TACATAAATAGGAA
HTBWTAAATAGTYY MEME-2 chr19 + 7257341 7257354 6.55e-05 0.194 tttatcaatattcc
HTBWTAAATAGTYY MEME-2 chr5 - 44808652 44808665 6.85e-05 0.202 TTTATAAACATCCT
HTBWTAAATAGTYY MEME-2 chr2 + 170530452 170530465 6.88e-05 0.202 TTTGCAAATATCTT
HTBWTAAATAGTYY MEME-2 chr6 - 155177679 155177692 7.07e-05 0.204 AAATTAAACATTTT
HTBWTAAATAGTYY MEME-2 chr3 - 191774921 191774934 7.07e-05 0.204 TAAATTAATAGTCA
HTBWTAAATAGTYY MEME-2 chr22 - 32473467 32473480 7.1e-05 0.204 CAAATAAATATGTA
HTBWTAAATAGTYY MEME-2 chr6 + 16332017 16332030 7.17e-05 0.204 TTGATAAACAGCAT
HTBWTAAATAGTYY MEME-2 chr5 - 54243474 54243487 7.17e-05 0.204 TTTATCAATAGCCT
HTBWTAAATAGTYY MEME-2 chr5 + 73031996 73032009 7.21e-05 0.204 TGATTAAATAGCAG
HTBWTAAATAGTYY MEME-2 chr2 + 171703766 171703779 7.24e-05 0.204 AATTTTAATATTCC
HTBWTAAATAGTYY MEME-2 chr1 - 164787769 164787782 7.28e-05 0.204 CCTTTAAAAAGCTT
HTBWTAAATAGTYY MEME-2 chr17 - 2264196 2264209 7.34e-05 0.204 ACTATAAATCGTCC
HTBWTAAATAGTYY MEME-2 chr5 - 73031873 73031886 7.34e-05 0.204 AAAATAAATAACTG
HTBWTAAATAGTYY MEME-2 chr10 + 114208398 114208411 7.34e-05 0.204 TTCTTAAAAATTTA
HTBWTAAATAGTYY MEME-2 chr11 - 86592951 86592964 7.63e-05 0.209 AGGTTAAATAACTG
HTBWTAAATAGTYY MEME-2 chrX + 119943806 119943819 7.63e-05 0.209 AATATAAATAAGCC
HTBWTAAATAGTYY MEME-2 chr13 - 110593684 110593697 7.68e-05 0.209 TAGTTTAATATTTG
HTBWTAAATAGTYY MEME-2 chr5 - 124706953 124706966 7.71e-05 0.209 TGTGTAAATAACCT
HTBWTAAATAGTYY MEME-2 chr1 + 205122159 205122172 7.71e-05 0.209 ACTTTAAATAGCGC
HTBWTAAATAGTYY MEME-2 chr17 - 50708127 50708140 7.81e-05 0.209 CTGGTAAACAGCCT
HTBWTAAATAGTYY MEME-2 chr4 - 98929862 98929875 7.81e-05 0.209 CTTCCAAATAATTT
HTBWTAAATAGTYY MEME-2 chr9 - 385830 385843 7.85e-05 0.209 AAATTTAATATTTT
HTBWTAAATAGTYY MEME-2 chr19 + 38962208 38962221 7.85e-05 0.209 aaAATAAATAATaa
HTBWTAAATAGTYY MEME-2 chr1 - 212291659 212291672 8.12e-05 0.215 AATGTAAATAGCAG
HTBWTAAATAGTYY MEME-2 chr4 + 185096388 185096401 8.16e-05 0.215 atttttaatattat
HTBWTAAATAGTYY MEME-2 chr10 + 112565470 112565483 8.28e-05 0.217 ATTTTAAATCATTT
HTBWTAAATAGTYY MEME-2 chr1 + 200510186 200510199 8.32e-05 0.217 AAAATTAATATTTT
HTBWTAAATAGTYY MEME-2 chr15 - 78322441 78322454 8.37e-05 0.217 TTTGTAAATATGAT
HTBWTAAATAGTYY MEME-2 chr3 + 87298145 87298158 8.41e-05 0.217 TTTTTAAAAAGTAA
HTBWTAAATAGTYY MEME-2 chr3 + 169657526 169657539 8.41e-05 0.217 AATTCAAATATTCA
HTBWTAAATAGTYY MEME-2 chr1 - 223811955 223811968 8.59e-05 0.219 TGTTCAAATATCTT
HTBWTAAATAGTYY MEME-2 chr1 + 225508477 225508490 8.63e-05 0.219 AATCCAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr1 - 228861424 228861437 8.63e-05 0.219 TCTCCAAATATTTC
HTBWTAAATAGTYY MEME-2 chr17 + 21040366 21040379 8.66e-05 0.219 CAGGTAAATAAGTC
HTBWTAAATAGTYY MEME-2 chr5 - 73032324 73032337 8.75e-05 0.221 ATATTAAAAATTTT
HTBWTAAATAGTYY MEME-2 chr2 + 27663681 27663694 8.83e-05 0.221 CCTCTAAATATGTC
HTBWTAAATAGTYY MEME-2 chr4 - 185096336 185096349 8.83e-05 0.221 TCATCAAATAATCT
HTBWTAAATAGTYY MEME-2 chr5 + 399919 399932 8.87e-05 0.221 TCTATAAACAGCCA
HTBWTAAATAGTYY MEME-2 chr3 + 87298439 87298452 9e-05 0.223 CAAATAAAAAGTTA
HTBWTAAATAGTYY MEME-2 chr17 + 40560603 40560616 9.14e-05 0.226 TGAGCAAATAGTCC
HTBWTAAATAGTYY MEME-2 chr7 - 101883321 101883334 9.18e-05 0.226 AATGTCAATAGTTC
HTBWTAAATAGTYY MEME-2 chr1 + 44328139 44328152 9.36e-05 0.229 AAGGTAAACAGTTG
HTBWTAAATAGTYY MEME-2 chr1 + 44328171 44328184 9.49e-05 0.23 TTTTTAAAAATTCA
HTBWTAAATAGTYY MEME-2 chr3 - 87298141 87298154 9.49e-05 0.23 TTTTTAAAAATTCA
HTBWTAAATAGTYY MEME-2 chr10 - 116891514 116891527 9.53e-05 0.23 AATTTAAATCTTTC
HTBWTAAATAGTYY MEME-2 chr15 - 38354661 38354674 9.61e-05 0.231 TAGGTAAATAACCA
HTBWTAAATAGTYY MEME-2 chr1 + 26698150 26698163 9.7e-05 0.232 CTGGTAAACAGCTG
HTBWTAAATAGTYY MEME-2 chr3 - 169657363 169657376 9.7e-05 0.232 CATTTTAATAGCCA
HTBWTAAATAGTYY MEME-2 chr8 - 37479589 37479602 9.79e-05 0.233 GTCATAAATAATGC
HTBWTAAATAGTYY MEME-2 chr4 - 185096024 185096037 9.84e-05 0.233 AGTTTAAATAACCG
HTBWTAAATAGTYY MEME-2 chr12 + 120291747 120291760 9.93e-05 0.234 CTTTTAAAAATTca
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_2 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif HTBWTAAATAGTYY /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_2
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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