# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:22 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF660.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:22 PDT 2018) # host: surya # when: Mon Jun 11 07:47:19 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.225 C 0.273 G 0.274 T 0.228 MOTIF DTAAATA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST DTAAATA TATTTAH 94 12 1.5e-018 4.9e-014 # ATAAATA TATTTAT 38 3 3.1e-009 1.0e-004 # TTAAATA TATTTAA 42 6 2.9e-008 9.7e-004 # GTAAATA TATTTAC 15 3 3.6e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 97 E= 4.9e-014 0.391753 0.000000 0.175258 0.432990 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGACTCAB DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TGACTCAB VTGAGTCA 41 1 5.0e-012 1.6e-007 # TGACTCAG CTGAGTCA 18 1 3.4e-005 1.1e+000 # TGACTCAT ATGAGTCA 13 0 1.1e-004 3.8e+000 # TGACTCAC GTGAGTCA 11 0 4.7e-004 1.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.6e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.261905 0.428571 0.309524 MOTIF GGAAM DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGAAM KTTCC 307 195 3.6e-011 1.2e-006 # GGAAA TTTCC 213 119 8.1e-010 2.7e-005 # GGAAC GTTCC 167 103 6.2e-006 2.0e-001 letter-probability matrix: alength= 4 w= 5 nsites= 471 E= 1.2e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.554140 0.445860 0.000000 0.000000 MOTIF GGTMATCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GGTMATCA TGATKACC 30 2 8.9e-008 2.8e-003 # GGTCATCA TGATGACC 17 0 6.8e-006 2.2e-001 # GGTAATCA TGATTACC 13 2 3.5e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.8e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.433333 0.566667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGKGGCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGGKGGCA TGCCMCCT 23 0 9.6e-008 3.0e-003 # AGGTGGCA TGCCACCT 12 0 2.3e-004 7.3e+000 # AGGGGGCA TGCCCCCT 11 0 4.7e-004 1.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 3.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.478261 0.521739 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACTTCC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CACTTCC GGAAGTG 40 8 1.1e-006 3.4e-002 # CACTTCC GGAAGTG 40 8 1.1e-006 3.4e-002 letter-probability matrix: alength= 4 w= 7 nsites= 42 E= 3.4e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CYTGGCA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CYTGGCA TGCCARG 64 22 1.5e-006 4.7e-002 # CTTGGCA TGCCAAG 33 6 5.3e-006 1.7e-001 # CCTGGCA TGCCAGG 35 16 4.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 70 E= 4.7e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.514286 0.000000 0.485714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 30.12 seconds