# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF658.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF658.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF658.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF658.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:38:55 PST 2017)
#   negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF658.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:38:56 PST 2017)
#        host: kadru
#        when: Mon Dec 18 16:58:22 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.243 C 0.244 G 0.271 T 0.243


MOTIF ATARTGRT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATARTGRT   AYCAYTAT         75          8   6.2e-016   1.6e-011
#         ATAGTGAT   ATCACTAT         34          1   6.6e-010   1.8e-005
#         ATAATGGT   ACCATTAT         20          0   8.1e-007   2.1e-002
#         ATAATGAT   ATCATTAT         28          4   7.6e-006   2.0e-001
#         ATAGTGGT   ACCACTAT         15          3   3.6e-003   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 114 E= 1.6e-011
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.508772 0.000000 0.491228 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.657895 0.000000 0.342105 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ACCACCRT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCACCRT   AYGGTGGT        102         22   4.3e-015   1.1e-010
#         ACCACCAT   ATGGTGGT         99         22   2.4e-014   6.3e-010
#         ACCACCGT   ACGGTGGT          9          0   1.9e-003   5.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 206 E= 1.1e-010
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.956311 0.000000 0.043689 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATGGTGAY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGTGAY   RTCACCAT        121         46   1.9e-010   4.9e-006
#         ATGGTGAT   ATCACCAT        118         45   3.7e-010   9.6e-006
#         ATGGTGAC   GTCACCAT         12          1   1.6e-003   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 288 E= 4.9e-006
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.045139 0.000000 0.954861


MOTIF CATCAYTR DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATCAYTR   YARTGATG         63         17   4.4e-008   1.1e-003
#         CATCACTA   TAGTGATG         19          4   1.2e-003   3.1e+001
#         CATCACTG   CAGTGATG         16          3   2.1e-003   5.3e+001
#         CATCATTG   CAATGATG         21          6   2.7e-003   7.0e+001
#         CATCATTA   TAATGATG         15          4   9.1e-003   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 1.1e-003
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.481928 0.000000 0.518072
0.000000 0.000000 0.000000 1.000000
0.469880 0.000000 0.530120 0.000000


MOTIF AAACACAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACACAC   GTGTGTTT         28          3   1.8e-006   4.6e-002
#         AAACACAC   GTGTGTTT         28          3   1.8e-006   4.6e-002

letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 4.6e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 41.63 seconds