# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF654.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF654.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF654.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF654.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:05:09 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF654.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:05:10 PDT 2018)
#        host: wotan
#        when: Thu May 10 19:37:09 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.234 C 0.264 G 0.260 T 0.242


MOTIF AGRKGGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AGRKGGC    GCCMYCT        345         51   7.5e-079   2.4e-074
#          AGATGGC    GCCATCT        120          9   1.1e-028   3.4e-024
#          AGGTGGC    GCCACCT        114         12   2.1e-024   6.7e-020
#          AGAGGGC    GCCCTCT         86         13   1.0e-015   3.3e-011
#          AGGGGGC    GCCCCCT         53         20   4.4e-005   1.4e+000

letter-probability matrix: alength= 4 w= 7 nsites= 383 E= 2.4e-074
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.556136 0.000000 0.443864 0.000000
0.000000 0.000000 0.370757 0.629243
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AYCTAGTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AYCTAGTG   CACTAGRT         62          0   4.1e-020   1.3e-015
#         ATCTAGTG   CACTAGAT         34          0   3.6e-011   1.1e-006
#         ACCTAGTG   CACTAGGT         28          0   2.7e-009   8.5e-005

letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 1.3e-015
1.000000 0.000000 0.000000 0.000000
0.000000 0.444444 0.000000 0.555556
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF RGRAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       RGRAA      TTYCY        456        324   7.5e-016   2.3e-011
#            GGAAA      TTTCC        207        113   5.2e-010   1.6e-005
#            AGGAA      TTCCT        211        133   4.1e-007   1.3e-002
#            AGAAA      TTTCT        203        133   4.3e-006   1.4e-001
#            GGGAA      TTCCC        165        119   1.1e-003   3.5e+001

letter-probability matrix: alength= 4 w= 5 nsites= 794 E= 2.3e-011
0.566751 0.000000 0.433249 0.000000
0.000000 0.000000 1.000000 0.000000
0.539043 0.000000 0.460957 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAGCRCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGCRCC   GGYGCTGT         26          1   1.6e-007   4.7e-003
#         ACAGCACC   GGTGCTGT         13          0   1.1e-004   3.3e+000
#         ACAGCGCC   GGCGCTGT         13          1   8.7e-004   2.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 4.7e-003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.500000 0.000000 0.500000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 72.60 seconds