# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF645.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF645.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF645.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF645.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:04:39 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF645.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:04:39 PDT 2018)
#        host: indra
#        when: Thu May 10 18:50:55 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.228 C 0.274 G 0.272 T 0.227


MOTIF CYATAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CYATAAA    TTTATRG         40          4   4.9e-009   1.6e-004
#          CTATAAA    TTTATAG         16          0   1.4e-005   4.4e-001
#          CCATAAA    TTTATGG         25          4   4.3e-005   1.4e+000

letter-probability matrix: alength= 4 w= 7 nsites= 43 E= 1.6e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.604651 0.000000 0.395349
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTTATB DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TTTATB     VATAAA         96         42   6.2e-007   2.0e-002
#           TTTATG     CATAAA         40         15   3.9e-004   1.2e+001
#           TTTATT     AATAAA         43         18   7.1e-004   2.3e+001
#           TTTATC     GATAAA         28         11   4.2e-003   1.3e+002

letter-probability matrix: alength= 4 w= 6 nsites= 126 E= 2.0e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.222222 0.365079 0.412698


# Stopping reason: E-value threshold exceeded
#    Running time: 12.38 seconds