Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
MAMACACACACACACACAMACA 22 CACACACACACACACACACACA
TYCCTBYCYCYYYCBYTCYCYC 22 TCCCTCCCTCTCTCTCTCTCTC
KGRTGAYGTCAT 12 GGATGATGTCAT
TGACTCA 7 TGACTCA
CGGATCACYTGAGGTCAGGAGTTCAAGABCAGCCTGGCCAACATGGTGAA 50 CGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAA
CACACACRCACACACA 16 CACACACACACACACA
ATTSTGATTACYTACTCCACMCTGACTCATT 31 ATTGTGATTACCTACTCCACCCTGACTCATT
TTWAWVHAMANWAHAWWANWWA 22 TTTATAAACACTAAATAATTAA
ATSACMWCAYMAMWVCMAYBACATCATCA 29 ATCACATCACCACACCCATGACATCATCA
CAGGTCNGCWTGGACACCGCCGGAAACGGAAATTCACMGTCGCGCCGACT 50 CAGGTCGGCTTGGACACCGCCGGAAACGGAAATTCACCGTCGCGCCGACT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.241 C 0.259 G 0.259 T 0.241

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
TGACTCA MEME-4 chr8 + 629290 629296 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 629329 629335 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 629368 629374 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 629407 629413 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 629446 629452 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 629485 629491 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 629563 629569 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 629602 629608 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 629640 629646 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 630862 630868 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 630899 630905 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 630978 630984 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 631017 631023 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 631063 631069 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 631102 631108 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 631142 631148 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 - 1080953 1080959 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr9 - 1458673 1458679 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr9 - 1458740 1458746 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 - 1950917 1950923 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 - 1951011 1951017 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 2986190 2986196 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr16 - 3020976 3020982 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr16 + 3021121 3021127 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 3314864 3314870 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 + 3890212 3890218 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 + 3890337 3890343 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr19 - 4575554 4575560 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 4663331 4663337 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr3 - 4741857 4741863 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr16 + 4944859 4944865 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr16 - 4944966 4944972 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr16 - 4944988 4944994 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr3 - 5023364 5023370 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr3 - 5023372 5023378 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr3 + 5023543 5023549 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 + 5340558 5340564 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 7401956 7401962 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 7401974 7401980 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 7402204 7402210 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 + 8139614 8139620 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr11 + 9566153 9566159 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr11 - 9566164 9566170 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr11 + 9566273 9566279 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 - 12398454 12398460 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 + 12398562 12398568 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 - 12448848 12448854 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr16 - 15590994 15591000 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr16 - 15591116 15591122 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 - 15736015 15736021 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 16122919 16122925 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 - 16826191 16826197 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 16849732 16849738 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 21022469 21022475 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chrX + 21806862 21806868 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chrX + 21806954 21806960 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr8 - 22604358 22604364 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr22 + 24556005 24556011 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr16 + 25049919 25049925 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr12 + 25333867 25333873 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr2 + 27720300 27720306 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr2 + 27720313 27720319 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr2 + 27720418 27720424 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 28212920 28212926 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr21 + 29217875 29217881 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 - 30907800 30907806 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 - 31749328 31749334 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 - 31749366 31749372 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr21 - 33011573 33011579 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr21 - 33011680 33011686 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 33264330 33264336 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 33264415 33264421 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr21 - 34845898 34845904 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr21 - 35047725 35047731 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr11 + 36149837 36149843 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr11 + 36149872 36149878 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr11 + 36149888 36149894 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr11 + 36149895 36149901 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr21 + 36210237 36210243 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr17 - 37488382 37488388 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chrX - 38061513 38061519 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chrX + 38061525 38061531 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 + 38783451 38783457 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr19 + 39033202 39033208 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr17 + 39770115 39770121 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr22 - 40711702 40711708 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr19 - 40715789 40715795 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr19 + 40715910 40715916 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr19 - 40750287 40750293 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr19 - 40831916 40831922 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr19 - 40920957 40920963 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr19 - 40921196 40921202 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 41870270 41870276 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 - 41870290 41870296 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 41870330 41870336 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 - 43322125 43322131 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 43322288 43322294 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr5 - 43336450 43336456 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 - 43336467 43336473 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 - 43336495 43336501 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 - 43336512 43336518 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr19 - 43596267 43596273 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr21 - 43728529 43728535 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr21 + 43857626 43857632 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr10 + 44752991 44752997 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 + 44820640 44820646 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 + 44820724 44820730 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 - 45321084 45321090 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr20 - 46085307 46085313 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr2 - 46481792 46481798 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 - 49541173 49541179 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 49541273 49541279 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 - 49541473 49541479 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr18 - 49656086 49656092 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr18 - 49656385 49656391 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr20 + 50166199 50166205 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr20 - 50166301 50166307 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr20 - 50166424 50166430 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 - 51153380 51153386 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr20 + 53611715 53611721 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr20 + 53899820 53899826 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 - 57112278 57112284 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr3 - 57556285 57556291 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 60951376 60951382 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 61141654 61141660 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 61692625 61692631 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr3 - 61895173 61895179 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr13 + 62643016 62643022 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 62643050 62643056 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 62643078 62643084 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 62643095 62643101 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 62643123 62643129 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 62643140 62643146 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 62643168 62643174 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 62643185 62643191 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 62643213 62643219 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 62643240 62643246 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr12 + 63419278 63419284 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr12 + 63419306 63419312 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr12 + 63419334 63419340 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr10 - 63707441 63707447 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 - 63707495 63707501 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 63707511 63707517 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 63707538 63707544 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 + 65631811 65631817 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr15 - 65832848 65832854 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 67700905 67700911 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr15 - 67792637 67792643 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 + 67978759 67978765 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 - 68153731 68153737 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 68153862 68153868 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 + 68381131 68381137 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr15 - 70508005 70508011 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr15 - 70526766 70526772 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 - 71438963 71438969 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr4 - 72112684 72112690 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr4 - 72112712 72112718 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr4 - 72112724 72112730 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr4 - 72112745 72112751 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr4 - 72112773 72112779 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 72204400 72204406 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr2 + 74454833 74454839 5.86e-05 0.123 tgaCTCA
TGACTCA MEME-4 chr15 - 74546293 74546299 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 - 74632307 74632313 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr17 - 77233842 77233848 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 80054297 80054303 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr7 - 80877118 80877124 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr7 + 80883630 80883636 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 82260496 82260502 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 85642891 85642897 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 - 85643173 85643179 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr9 - 85743248 85743254 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr13 - 87124148 87124154 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr2 - 88600155 88600161 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr2 - 88600334 88600340 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 - 89769310 89769316 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 + 89769327 89769333 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr12 + 89769483 89769489 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr5 - 92552789 92552795 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 - 95103412 95103418 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr8 + 96365537 96365543 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr15 - 98896982 98896988 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr15 + 98897229 98897235 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 - 99900734 99900740 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr3 + 100003069 100003075 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr3 + 100003274 100003280 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chrX + 104156537 104156543 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr9 + 108477598 108477604 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr9 - 109816631 109816637 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr13 - 110870343 110870349 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr13 + 110870399 110870405 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr13 + 110965383 110965389 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 110965400 110965406 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 110965428 110965434 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 110965445 110965451 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 110965473 110965479 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 110965490 110965496 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 110965518 110965524 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr13 + 110965535 110965541 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr6 + 111568552 111568558 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr13 - 113493469 113493475 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr12 - 114914453 114914459 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr7 - 116218492 116218498 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 + 123814383 123814389 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr3 - 124429292 124429298 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 - 124488143 124488149 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 - 124909082 124909088 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr5 + 125277719 125277725 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 125511863 125511869 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 125512187 125512193 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr10 - 125973432 125973438 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 + 125973479 125973485 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr10 - 126247581 126247587 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr9 - 130781071 130781077 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 - 132527965 132527971 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 - 132528002 132528008 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 133248706 133248712 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 133248943 133248949 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr7 + 133492275 133492281 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr11 - 134851732 134851738 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr11 - 134851807 134851813 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr11 - 134851882 134851888 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr11 - 134851957 134851963 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr11 - 134852032 134852038 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr7 + 135716909 135716915 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr6 + 136774440 136774446 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr6 - 137853734 137853740 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 141326670 141326676 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr6 + 149233600 149233606 5.86e-05 0.123 tgaCTCA
TGACTCA MEME-4 chr7 + 150360268 150360274 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 151495016 151495022 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 154613490 154613496 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 154613613 154613619 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 156661513 156661519 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 - 158040452 158040458 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 158040485 158040491 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr6 + 158040585 158040591 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 175471148 175471154 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr2 - 175805704 175805710 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 183060533 183060539 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 183060624 183060630 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr3 - 190973149 190973155 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 198763598 198763604 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 203558560 203558566 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 205734579 205734585 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 205734589 205734595 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 212596512 212596518 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 214439704 214439710 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 219279509 219279515 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 221394096 221394102 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 225655603 225655609 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 - 227934772 227934778 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227934804 227934810 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227934836 227934842 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227934919 227934925 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227934951 227934957 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227934983 227934989 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227935015 227935021 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227935045 227935051 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227935077 227935083 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227935108 227935114 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 227935140 227935146 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 228861374 228861380 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 228903227 228903233 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 - 232704967 232704973 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 232704983 232704989 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 234700399 234700405 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 234700532 234700538 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 235504969 235504975 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 236097080 236097086 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 236097119 236097125 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 236097148 236097154 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 236097177 236097183 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 236097206 236097212 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 236097235 236097241 5.86e-05 0.123 TGACTCA
TGACTCA MEME-4 chr1 + 236097264 236097270 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 236097293 236097299 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 236097322 236097328 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 236097351 236097357 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 + 236097380 236097386 5.86e-05 0.123 tgactca
TGACTCA MEME-4 chr1 - 244348060 244348066 5.86e-05 0.123 TGACTCA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_4 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif TGACTCA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_4
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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