# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:04:25 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF639.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:04:25 PDT 2018)
#        host: wotan
#        when: Thu May 10 19:58:56 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.249 C 0.250 G 0.254 T 0.246


MOTIF TGACTCAB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACTCAB   VTGAGTCA         69          4   1.9e-017   6.5e-013
#         TGACTCAT   ATGAGTCA         33          1   1.3e-009   4.5e-005
#         TGACTCAC   GTGAGTCA         21          1   4.7e-006   1.6e-001
#         TGACTCAG   CTGAGTCA         22          2   1.5e-005   5.2e-001

letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 6.5e-013
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.265957 0.276596 0.457447


MOTIF SCGGAAS DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     SCGGAAS    STTCCGS         87         20   2.5e-012   8.3e-008
#          GCGGAAG    CTTCCGC         22          2   1.5e-005   5.1e-001
#          GCGGAAC    GTTCCGC         26          5   8.0e-005   2.7e+000
#          CCGGAAG    CTTCCGG         29          7   1.3e-004   4.3e+000
#          CCGGAAC    GTTCCGG         28          7   2.1e-004   7.1e+000

letter-probability matrix: alength= 4 w= 7 nsites= 105 E= 8.3e-008
0.000000 0.542857 0.457143 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.514286 0.485714 0.000000


MOTIF TGABGTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGABGTCA   TGACVTCA         50          5   4.5e-011   1.5e-006
#         TGATGTCA   TGACATCA         30          3   5.2e-007   1.7e-002
#         TGACGTCA   TGACGTCA          9          0   1.9e-003   6.4e+001
#         TGAGGTCA   TGACCTCA         14          2   2.0e-003   6.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 1.5e-006
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.139241 0.240506 0.620253
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTTATGR DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TTTATGR    YCATAAA         51          7   5.2e-010   1.7e-005
#          TTTATGA    TCATAAA         30          2   8.9e-008   3.0e-003
#          TTTATGG    CCATAAA         23          5   4.0e-004   1.3e+001

letter-probability matrix: alength= 4 w= 7 nsites= 58 E= 1.7e-005
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.586207 0.000000 0.413793 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 65.25 seconds