# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 TTTTKTTTTTTTTTGTTTTKTTTTKTTTT MEME-1 TTTTKTTTTTTTTTGTTTTKTTTTKTTTT 1.6e-253 2.1e-256 -588.70 0.0 100 472 516 593 0.21186 9.1e-259 235 1 GAGAYRGAGTCTCRCTCTGTYR MEME-2 GAGAYRGAGTCTCRCTCTGTYR 4.5e-029 6.1e-032 -71.88 0.0 157 479 261 421 0.32777 2.5e-034 239 1 TKTTTKTKTKTTTTTTTKTKTT MEME-3 TKTTTKTKTKTTTTTTTKTKTT 7.2e-229 9.7e-232 -531.93 0.0 95 479 491 600 0.19833 4.1e-234 239 2 AAAACRAA DREME-1 AAAACAAA 3.4e-213 4.6e-216 -495.83 0.0 99 493 440 522 0.20081 1.9e-218 246 2 RTCTCR DREME-2 GTCTCA 1.3e-014 1.8e-017 -38.55 0.0 151 495 237 468 0.30505 7.3e-020 247 2 CAGBCTG DREME-3 CAGSCTG 1.3e-002 1.8e-005 -10.95 0.0 194 494 205 390 0.39271 7.1e-008 246 2 CTCTGTY DREME-4 CTCTGTY 1.0e-024 1.4e-027 -61.84 0.0 184 494 212 306 0.37247 5.6e-030 246 2 TGCAGTGR DREME-5 TGCAGTGR 1.2e-026 1.6e-029 -66.29 0.0 243 493 282 354 0.49290 6.6e-032 246 2 AGMCTCC DREME-6 AGMCTCC 3.2e-001 4.3e-004 -7.75 0.0 354 494 285 345 0.71660 1.8e-006 246 3 M0398_1.02 (ZSCAN10)_(Mus_musculus)_(DBD_0.82) NGKRAGTGCNN 1.0e-003 1.4e-006 -13.51 0.0 230 490 334 566 0.46939 5.6e-009 244 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 2.0e-189 2.7e-192 -441.09 0.0 89 491 443 600 0.18126 1.1e-194 245 3 M0442_1.02 (ZBTB3)_(Mus_musculus)_(DBD_1.00) NNTGCAGYG 1.1e-017 1.4e-020 -45.70 0.0 224 492 391 597 0.45528 5.8e-023 245 3 M0718_1.02 FOXK1 DNRTMAACAH 1.7e-069 2.3e-072 -164.97 0.0 107 491 337 600 0.21792 9.2e-075 245 3 M0719_1.02 FOXG1 RTAAACAW 2.9e-045 3.9e-048 -109.16 0.0 103 493 288 594 0.20892 1.6e-050 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 2.1e-184 2.8e-187 -429.54 0.0 99 489 456 599 0.20245 1.2e-189 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 1.0e-145 1.4e-148 -340.45 0.0 103 493 424 600 0.20892 5.7e-151 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 2.5e0000 3.3e-003 -5.70 0.0 133 491 206 587 0.27088 1.4e-005 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 5.4e-038 7.3e-041 -92.42 0.0 77 491 234 599 0.15682 3.0e-043 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHMACANN 2.8e-058 3.7e-061 -139.14 0.0 130 492 352 594 0.26423 1.5e-063 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 1.2e0000 1.7e-003 -6.40 0.0 141 491 196 522 0.28717 6.8e-006 245 3 M1358_1.02 (TERF2)_(Mus_musculus)_(DBD_0.92) NAACCCTAV 2.5e-001 3.4e-004 -7.99 0.0 70 492 110 496 0.14228 1.4e-006 245 3 M1359_1.02 (MYPOP)_(Mus_musculus)_(DBD_0.97) NWTTGCGCCR 5.5e-001 7.4e-004 -7.20 0.0 267 491 314 486 0.54379 3.0e-006 245 3 M1507_1.02 (LCOR)_(Meleagris_gallopavo)_(DBD_1.00) NDWTTNGGNN 1.7e-020 2.3e-023 -52.14 0.0 73 491 189 589 0.14868 9.3e-026 245 3 M1529_1.02 (RFX7)_(Mus_musculus)_(DBD_1.00) VCNTRGYAAC 7.8e0000 1.0e-002 -4.56 0.0 345 491 464 598 0.70265 4.3e-005 245 3 M1589_1.02 (SOX30)_(Mus_musculus)_(DBD_1.00) NNDNRACAAT 4.2e-027 5.6e-030 -67.35 0.0 97 491 245 600 0.19756 2.3e-032 245 3 M1594_1.02 (SOX12)_(Mus_musculus)_(DBD_1.00) HWTTGTYNNN 2.7e-115 3.6e-118 -270.43 0.0 99 491 385 600 0.20163 1.5e-120 245 3 M1601_1.02 (SOX11)_(Mus_musculus)_(DBD_1.00) WTTGTBNNN 2.5e-065 3.4e-068 -155.35 0.0 104 492 325 599 0.21138 1.4e-070 245 3 M1668_1.02 PRKRIR NYCVNVSKRNNN 1.1e-001 1.5e-004 -8.84 0.0 293 489 407 584 0.59918 6.0e-007 244 3 M1882_1.02 IRF1 AAANHGAAAGTGAAASYRRRN 3.4e-120 4.5e-123 -281.71 0.0 102 480 398 597 0.21250 1.9e-125 239 3 M2267_1.02 CDX2 TTTTATKRCHB 1.9e-056 2.6e-059 -134.89 0.0 90 490 287 593 0.18367 1.1e-061 244 3 M2281_1.02 FOXH1 BNSAATCCACA 3.2e-004 4.3e-007 -14.66 0.0 46 490 93 522 0.09388 1.8e-009 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 2.1e-198 2.8e-201 -461.80 0.0 110 486 488 600 0.22634 1.2e-203 242 3 M2310_1.02 RUNX2 MAAACCACARAMMMM 1.8e-086 2.4e-089 -204.04 0.0 96 486 344 597 0.19753 1.0e-091 242 3 M2313_1.02 (SOX6)_(Mus_musculus)_(DBD_1.00) CCWTTGTYYY 9.4e-092 1.3e-094 -216.21 0.0 101 491 357 596 0.20570 5.2e-097 245 3 M2319_1.02 TCF7L2 TBYCTTTGAWSTYN 3.2e-004 4.4e-007 -14.65 0.0 111 487 190 562 0.22793 1.8e-009 243 3 M2385_1.02 FOXP2 RWGTAAACAVR 1.1e-121 1.4e-124 -285.15 0.0 104 490 400 599 0.21224 5.9e-127 244 3 M4452_1.02 BATF TYYYRWWATGASTCA 5.6e-003 7.5e-006 -11.80 0.0 146 486 223 542 0.30041 3.1e-008 242 3 M4467_1.02 MEF2C DDKCYAAAAATAGMH 5.1e-001 6.9e-004 -7.28 0.0 76 486 136 596 0.15638 2.9e-006 242 3 M4476_1.02 RFX5 TCABYWGTTGCYRGG 6.2e-002 8.4e-005 -9.39 0.0 336 486 454 578 0.69136 3.5e-007 242 3 M4477_1.02 SRF NHATGNCCAWAWAAGGMMA 6.9e0000 9.3e-003 -4.68 0.0 2 482 10 475 0.00415 3.9e-005 240 3 M4484_1.02 ZNF143 CTGGGARTTGTAGTY 2.7e0000 3.7e-003 -5.60 0.0 368 486 376 448 0.75720 1.5e-005 242 3 M4509_1.02 POU5F1 ATYTGCATRACAAWGRV 1.9e0000 2.6e-003 -5.94 0.0 152 484 200 493 0.31405 1.1e-005 241 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 2.1e-001 2.9e-004 -8.15 0.0 346 486 420 523 0.71193 1.2e-006 242 3 M4551_1.02 ZNF274 YTCAYACTGGAGAGAAA 2.3e-010 3.1e-013 -28.79 0.0 186 484 197 326 0.38430 1.3e-015 241 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 2.3e-007 3.1e-010 -21.91 0.0 112 486 212 592 0.23045 1.3e-012 242 3 M4572_1.02 MAFF TGCTGACTCAGCAWW 1.1e-002 1.5e-005 -11.12 0.0 334 486 367 459 0.68724 6.1e-008 242 3 M4612_1.02 CTCFL CCRSCAGGGGGCGCY 1.6e-001 2.2e-004 -8.42 0.0 260 486 290 447 0.53498 9.1e-007 242 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 6.6e-002 8.9e-005 -9.32 0.0 330 484 344 435 0.68182 3.7e-007 241 3 M4635_1.02 STAT2 GAAANYGAAACTDAA 7.6e-088 1.0e-090 -207.21 0.0 108 486 364 593 0.22222 4.2e-093 242 3 M4681_1.02 BACH2 TGCTGAGTCA 1.0e0000 1.4e-003 -6.60 0.0 361 491 374 454 0.73523 5.5e-006 245 3 M4692_1.02 SIX5 ACTACAAYTC 5.4e-001 7.3e-004 -7.22 0.0 175 491 224 489 0.35642 3.0e-006 245 3 M4698_1.02 HNF4A BTGRMCTTTGVHCYB 2.2e-001 3.0e-004 -8.12 0.0 210 486 299 561 0.43210 1.2e-006 242 3 M4840_1.02 (FEZF1)_(Drosophila_melanogaster)_(DBD_0.91) AAAWGMGCAWC 1.8e-076 2.4e-079 -181.04 0.0 88 490 312 589 0.17959 9.8e-082 244 3 M5322_1.02 CPEB1 TTTTTATT 8.9e-003 1.2e-005 -11.33 0.0 113 493 195 599 0.22921 4.9e-008 246 3 M5446_1.02 FOXD4L2 RTAAACA 2.0e-029 2.7e-032 -72.70 0.0 104 494 260 600 0.21053 1.1e-034 246 3 M5460_1.02 FOXL1 RTAAACA 4.4e-006 5.9e-009 -18.94 0.0 96 494 184 598 0.19433 2.4e-011 246 3 M5530_1.02 HOMEZ TWTAATCGTTTT 6.9e-099 9.2e-102 -232.64 0.0 61 489 287 578 0.12474 3.8e-104 244 3 M5544_1.02 HOXC10 DTTTWATKDB 2.0e-043 2.7e-046 -104.93 0.0 63 491 218 600 0.12831 1.1e-048 245 3 M5551_1.02 HOXC12 TTTTATTRC 4.0e-073 5.3e-076 -173.32 0.0 82 492 300 600 0.16667 2.2e-078 245 3 M5553_1.02 HOXC13 CYAATAAAAH 4.2e-015 5.7e-018 -39.71 0.0 63 491 161 595 0.12831 2.3e-020 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 3.1e-011 4.2e-014 -30.80 0.0 145 491 233 496 0.29532 1.7e-016 245 3 M5557_1.02 HOXD12 GTAATAAAA 6.9e-011 9.3e-014 -30.01 0.0 82 492 180 599 0.16667 3.8e-016 245 3 M5581_1.02 IRX2 CWTGTCRTGTWN 1.7e-046 2.2e-049 -112.02 0.0 95 489 274 578 0.19427 9.2e-052 244 3 M5582_1.02 IRX5 SWTGTYRTGTWN 1.0e-066 1.4e-069 -158.54 0.0 69 489 266 597 0.14110 5.8e-072 244 3 M5697_1.02 ONECUT3 DTTATYGATTTTTY 1.4e-129 1.9e-132 -303.31 0.0 85 487 371 585 0.17454 7.7e-135 243 3 M5711_1.02 PAX9 KKCASTCAWGCGTGACS 3.0e-001 4.1e-004 -7.81 0.0 242 484 147 224 0.50000 1.7e-006 241 3 M5777_1.02 RFX4 NGTWRCCATGGYWACS 7.7e0000 1.0e-002 -4.57 0.0 387 485 356 407 0.79794 4.3e-005 242 3 M5903_1.02 TCF7L1 AAAGATCAAAGG 2.5e0000 3.4e-003 -5.68 0.0 153 489 192 474 0.31288 1.4e-005 244 3 M5972_1.02 ZNF410 GANTATTATGGGATGKM 7.2e-001 9.7e-004 -6.94 0.0 96 484 49 133 0.19835 4.0e-006 241 3 M5976_1.02 ZNF713 TTCGTGGCATTYTTCTA 5.3e-020 7.2e-023 -50.99 0.0 102 484 114 213 0.21074 3.0e-025 241 3 M6037_1.02 (IRX1)_(Mus_musculus)_(DBD_1.00) TTTKTCATGTWR 2.4e-016 3.2e-019 -42.57 0.0 37 489 116 583 0.07566 1.3e-021 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 5.2e-084 6.9e-087 -198.39 0.0 73 491 298 599 0.14868 2.8e-089 245 3 M6140_1.02 AIRE HTTGGWWWWWWTGGDTWH 2.4e-075 3.3e-078 -178.41 0.0 69 483 279 594 0.14286 1.4e-080 241 3 M6147_1.02 ARID3A TWWAWTTTGATWYYVWTTAATH 1.4e-113 1.9e-116 -266.45 0.0 91 479 370 594 0.18998 8.0e-119 239 3 M6149_1.02 ARID5B DBYKDGTATTSKR 6.2e-003 8.4e-006 -11.69 0.0 72 488 138 597 0.14754 3.4e-008 243 3 M6163_1.02 BPTF KKTBTTGTKKKS 7.6e-215 1.0e-217 -499.64 0.0 105 489 493 600 0.21472 4.2e-220 244 3 M6167_1.02 CDX1 HCATAAAD 3.6e-006 4.8e-009 -19.15 0.0 49 493 113 597 0.09939 2.0e-011 246 3 M6187_1.02 DDIT3 GGGGATTGCABBB 1.6e-003 2.2e-006 -13.05 0.0 266 488 378 571 0.54508 8.9e-009 243 3 M6211_1.02 EOMES CGGGGATACGAAAT 9.1e-002 1.2e-004 -9.01 0.0 261 487 122 168 0.53593 5.0e-007 243 3 M6225_1.02 MECOM WAGAYAAGATAANAKW 6.2e-043 8.4e-046 -103.79 0.0 83 485 238 540 0.17113 3.5e-048 242 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 7.2e-087 9.7e-090 -204.96 0.0 70 488 297 600 0.14344 4.0e-092 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 1.2e-079 1.6e-082 -188.36 0.0 102 486 338 580 0.20988 6.5e-085 242 3 M6236_1.02 FOXC2 YCTRDSWAAACAAAC 4.6e-020 6.2e-023 -51.14 0.0 92 486 217 582 0.18930 2.6e-025 242 3 M6237_1.02 FOXD3 AAACAAACA 9.7e-186 1.3e-188 -432.62 0.0 98 492 455 599 0.19919 5.3e-191 245 3 M6238_1.02 FOXF1 WAAATAAACAW 8.4e-112 1.1e-114 -262.37 0.0 102 490 383 594 0.20816 4.6e-117 244 3 M6239_1.02 FOXF2 HWADGTAAACA 2.6e-066 3.5e-069 -157.62 0.0 100 490 321 599 0.20408 1.4e-071 244 3 M6240_1.02 FOXI1 RRCCAATCAVAR 6.8e-033 9.2e-036 -80.68 0.0 83 489 215 525 0.16973 3.8e-038 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 2.0e-147 2.7e-150 -344.38 0.0 91 491 406 600 0.18534 1.1e-152 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 2.4e-229 3.2e-232 -533.04 0.0 102 488 499 599 0.20902 1.3e-234 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 2.0e-177 2.7e-180 -413.48 0.0 74 488 404 599 0.15164 1.1e-182 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 9.6e-228 1.3e-230 -529.34 0.0 105 485 504 600 0.21649 5.3e-233 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 1.3e-172 1.7e-175 -402.43 0.0 90 488 430 600 0.18443 6.9e-178 243 3 M6247_1.02 FOXO4 MRTAAACAA 1.3e-198 1.7e-201 -462.29 0.0 102 492 473 600 0.20732 6.9e-204 245 3 M6249_1.02 FOXP3 AAWCAMATT 1.9e-090 2.5e-093 -213.23 0.0 80 492 319 599 0.16260 1.0e-095 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 1.9e-087 2.5e-090 -206.30 0.0 95 489 336 580 0.19427 1.0e-092 244 3 M6251_1.02 FUBP1 TYGTNTTTTTTT 3.1e-191 4.1e-194 -445.29 0.0 87 489 442 600 0.17791 1.7e-196 244 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 1.2e-027 1.6e-030 -68.59 0.0 77 487 203 554 0.15811 6.7e-033 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 6.5e0000 8.7e-003 -4.74 0.0 51 489 88 549 0.10429 3.6e-005 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 1.4e-007 1.9e-010 -22.39 0.0 52 490 121 585 0.10612 7.7e-013 244 3 M6293_1.02 HOXA7 KCCAATCKATYGAKB 7.0e-001 9.5e-004 -6.96 0.0 336 486 443 570 0.69136 3.9e-006 242 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 9.1e-088 1.2e-090 -207.03 0.0 116 486 334 497 0.23868 5.1e-093 242 3 M6301_1.02 HOXD10 AATTAAARCA 5.2e-123 7.0e-126 -288.19 0.0 99 491 394 600 0.20163 2.8e-128 245 3 M6308_1.02 IRF2 SGAAAGYGAAASYV 1.6e-035 2.2e-038 -86.72 0.0 109 487 277 582 0.22382 8.9e-041 243 3 M6309_1.02 IRF3 GGAAAGBGAAASBRRRA 9.0e-085 1.2e-087 -200.13 0.0 82 484 317 596 0.16942 5.0e-090 241 3 M6311_1.02 IRF5 KAAAGGRAARCMAAAWSWGA 2.4e-063 3.2e-066 -150.80 0.0 105 481 266 440 0.21830 1.3e-068 240 3 M6312_1.02 IRF7 GAAASYGAAA 9.3e-099 1.3e-101 -232.34 0.0 101 491 367 599 0.20570 5.1e-104 245 3 M6313_1.02 IRF8 GRGRAAVTGAAASYR 3.5e-003 4.7e-006 -12.26 0.0 158 486 256 588 0.32510 2.0e-008 242 3 M6314_1.02 IRF9 GAAAGCGAAAYT 4.8e-001 6.5e-004 -7.34 0.0 161 489 197 454 0.32924 2.7e-006 244 3 M6327_1.02 LEF1 CTTTGWW 6.4e-009 8.6e-012 -25.48 0.0 108 494 212 600 0.21862 3.5e-014 246 3 M6348_1.02 MTF1 MGKGCCGTGTGCAAADS 1.4e-004 1.9e-007 -15.49 0.0 244 484 292 451 0.50413 7.8e-010 241 3 M6391_1.02 NR2E3 TGACTTTTGACTTT 1.4e-021 1.9e-024 -54.62 0.0 81 487 207 598 0.16632 7.8e-027 243 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 1.9e-091 2.6e-094 -215.48 0.0 86 480 323 563 0.17917 1.1e-096 239 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 2.4e-014 3.2e-017 -37.97 0.0 78 486 178 570 0.16049 1.3e-019 242 3 M6416_1.02 CBFB YYTGTGGTYWB 7.0e-016 9.3e-019 -41.51 0.0 68 490 172 598 0.13878 3.8e-021 244 3 M6438_1.02 PROP1 RASHAATTAAHWTVR 3.3e-020 4.4e-023 -51.47 0.0 50 486 147 575 0.10288 1.8e-025 242 3 M6456_1.02 RREB1 DKGKKKGKGGKTGKTTTGGGKT 1.4e-142 1.9e-145 -333.23 0.0 87 479 385 569 0.18163 7.9e-148 239 3 M6457_1.02 RUNX1 WAACCACARW 5.3e-016 7.1e-019 -41.79 0.0 67 491 169 594 0.13646 2.9e-021 245 3 M6459_1.02 RUNX3 AACCRCAAAMCMCV 9.8e-107 1.3e-109 -250.71 0.0 83 487 343 589 0.17043 5.4e-112 243 3 M6470_1.02 SOX10 BCWTTGT 4.0e-013 5.4e-016 -35.16 0.0 106 494 222 599 0.21457 2.2e-018 246 3 M6471_1.02 SOX13 YATTGTTY 1.2e-060 1.6e-063 -144.59 0.0 107 493 322 598 0.21704 6.5e-066 246 3 M6472_1.02 SOX15 CWTTGTT 1.0e0000 1.4e-003 -6.60 0.0 104 494 172 598 0.21053 5.6e-006 246 3 M6474_1.02 SOX18 GGAMRAVAACAAWKBDWDS 4.1e-001 5.5e-004 -7.50 0.0 58 482 102 537 0.12033 2.3e-006 240 3 M6475_1.02 SOX2 WTTTGCATRACAAWGG 3.1e-014 4.2e-017 -37.72 0.0 157 485 293 581 0.32371 1.7e-019 242 3 M6476_1.02 SOX4 GAGAACAAAGSG 4.1e-050 5.6e-053 -120.32 0.0 87 489 272 596 0.17791 2.3e-055 244 3 M6477_1.02 SOX5 WAACAATR 1.1e-099 1.5e-102 -234.45 0.0 77 493 325 598 0.15619 6.1e-105 246 3 M6478_1.02 SOX9 ARAACAATRGR 2.1e-097 2.8e-100 -229.23 0.0 100 490 364 598 0.20408 1.1e-102 244 3 M6485_1.02 SPIB ARAAASMGGAAS 1.1e-003 1.5e-006 -13.38 0.0 101 489 177 574 0.20654 6.3e-009 244 3 M6490_1.02 SRY DAAACAAWR 2.3e-207 3.1e-210 -482.41 0.0 92 492 463 599 0.18699 1.3e-212 245 3 M6509_1.02 TEAD4 AAAAAYAKCYCT 6.0e-017 8.1e-020 -43.96 0.0 83 489 191 564 0.16973 3.3e-022 244 3 M6557_1.02 ZNF384 GSAAAAAVYMKS 4.3e-063 5.7e-066 -150.23 0.0 85 489 291 600 0.17382 2.3e-068 244 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).