******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:140718654-140719154 1.0000 100 chr10:71197915-71198415 1.0000 100 chrUn_KI270587v1:1526-20 1.0000 100 chr1:52955537-52956037 1.0000 100 chr4:76326385-76326885 1.0000 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1.0000 100 chr10:132052009-13205250 1.0000 100 chr7:625333-625833 1.0000 100 chr14:90823412-90823912 1.0000 100 chr1:205122038-205122538 1.0000 100 chr16:58359987-58360487 1.0000 100 chr8:36940805-36941305 1.0000 100 chr12:56653753-56654253 1.0000 100 chr22:19648354-19648854 1.0000 100 chr1:228118007-228118507 1.0000 100 chr3:171854582-171855082 1.0000 100 chr6:52200061-52200561 1.0000 100 chr5:134262627-134263127 1.0000 100 chr17:80155457-80155957 1.0000 100 chr9:129513196-129513696 1.0000 100 chr10:21724686-21725186 1.0000 100 chr19:16882082-16882582 1.0000 100 chr8:37427468-37427968 1.0000 100 chrX:63475145-63475645 1.0000 100 chr7:103048758-103049258 1.0000 100 chr15:67684963-67685463 1.0000 100 chr5:134284395-134284895 1.0000 100 chr10:71945789-71946289 1.0000 100 chr11:27135765-27136265 1.0000 100 chr5:5409115-5409615 1.0000 100 chr6:88031488-88031988 1.0000 100 chr14:103204702-10320520 1.0000 100 chr18:45755963-45756463 1.0000 100 chr7:97439570-97440070 1.0000 100 chr17:78558354-78558854 1.0000 100 chr1:80054150-80054650 1.0000 100 chr6:112328836-112329336 1.0000 100 chr1:224914224-224914724 1.0000 100 chr6:82260181-82260681 1.0000 100 chr18:50961947-50962447 1.0000 100 chr6:33101076-33101576 1.0000 100 chr19:38935241-38935741 1.0000 100 chr12:65624492-65624992 1.0000 100 chr1:151907302-151907802 1.0000 100 chr18:80022628-80023128 1.0000 100 chr17:28262056-28262556 1.0000 100 chr1:29379378-29379878 1.0000 100 chr4:25223752-25224252 1.0000 100 chr6:5323928-5324428 1.0000 100 chr12:42617579-42618079 1.0000 100 chr5:125198491-125198991 1.0000 100 chr8:43124333-43124833 1.0000 100 chr19:19468346-19468846 1.0000 100 chr1:84287378-84287878 1.0000 100 chr7:138527579-138528079 1.0000 100 chr5:32339182-32339682 1.0000 100 chr17:60557782-60558282 1.0000 100 chrUn_KI270467v1:2629-31 1.0000 100 chr17:77233761-77234261 1.0000 100 chr5:59713056-59713556 1.0000 100 chr9:132697218-132697718 1.0000 100 chr19:34570071-34570571 1.0000 100 chr13:41148634-41149134 1.0000 100 chr19:57566375-57566875 1.0000 100 chr1:93078928-93079428 1.0000 100 chr4:41024854-41025354 1.0000 100 chr19:37364892-37365392 1.0000 100 chr7:149529039-149529539 1.0000 100 chr19:6291967-6292467 1.0000 100 chr17:27695198-27695698 1.0000 100 chr6:83867507-83868007 1.0000 100 chr4:83378370-83378870 1.0000 100 chr21:38223846-38224346 1.0000 100 chr4:41294389-41294889 1.0000 100 chr22:19316655-19317155 1.0000 100 chr21:37348510-37349010 1.0000 100 chr1:229221463-229221963 1.0000 100 chr3:183653142-183653642 1.0000 100 chr1:16506292-16506792 1.0000 100 chr10:87586142-87586642 1.0000 100 chr5:68932788-68933288 1.0000 100 chr19:1383548-1384048 1.0000 100 chrX:73944041-73944541 1.0000 100 chrUn_KI270467v1:3137-36 1.0000 100 chr17:26603638-26604138 1.0000 100 chr1:224343544-224344044 1.0000 100 chrUn_KI270467v1:2005-25 1.0000 100 chr16:1271736-1272236 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 599 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59900 N= 599 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.267 C 0.233 G 0.233 T 0.267 Background letter frequencies (from /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.276 C 0.225 G 0.225 T 0.276 ******************************************************************************** ******************************************************************************** MOTIF CATAAGACAGACACTCCCAGAGCGGC MEME-1 width = 26 sites = 50 llr = 1501 E-value = 4.3e-404 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATAAGACAGACACTCCCAGAGCGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :91aa1a:a:a:9:::::a1a::2:: pos.-specific C 8:1::::a:::9:7:aa9::::8::a probability G :1:::9:::a:::::::::9:a:7a: matrix T 2:8::::::::1:2a::1::::2::: bits 2.2 1.9 * * ** ** * ** 1.7 ******** ******** ** 1.5 ********** ********* ** Relative 1.3 ** ********** ********* ** Entropy 1.1 ************************** (43.3 bits) 0.9 ************************** 0.6 ************************** 0.4 ************************** 0.2 ************************** 0.0 -------------------------- Multilevel CATAAGACAGACACTCCCAGAGCGGC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAGACAGACACTCCCAGAGCGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chr19:34570071-34570571 - 12 1.27e-16 ATCTGAACCG CATAAGACAGACACTCCCAGAGCGGC CATTTATAGA chr1:32458742-32459242 - 39 1.27e-16 ACCTCAACCA CATAAGACAGACACTCCCAGAGCGGC CATTTATAGA chr6:33152106-33152606 + 44 1.27e-16 atctcaaccg cataagacagacactcccagagcggc tgtttataga chr8:38022454-38022954 + 13 1.27e-16 atctcaacca cataagacagacactcccagagcggc catttataga chr11:47875825-47876325 + 39 1.27e-16 atctcaaccg cataagacagacactcccagagcggc agtttataga chr3:72075814-72076314 + 50 1.27e-16 tcttcaaccg cataagacagacactcccagagcggc cattttacag chr2:46642819-46643319 + 44 1.27e-16 tcttcaactg cataagacagacactcccagagcggc tattttagag chr20:56520914-56521414 + 56 1.27e-16 tctacaactg cataagacagacactcccagagcggc cattttagag chr12:106620554-10662105 + 43 1.27e-16 atctcaacca cataagacagacactcccagagcggc tgtttataga chr11:128998967-12899946 - 50 1.27e-16 TCTACAACTG CATAAGACAGACACTCCCAGAGCGGC CATGTTAGAG chr3:138486523-138487023 + 46 1.27e-16 atctcaactg cataagacagacactcccagagcggc catttataga chr5:80902597-80903097 + 37 2.83e-16 tctacaactg cataagacagacactcccagagcagc cattttagag chr12:235630-236130 - 40 4.40e-16 ATCTCAACTG CATAAGACAGACATTCCCAGAGCGGC CATTTATAGA chr5:134262627-134263127 + 43 7.53e-16 tcttcaactg cataagacagacactcccagagtggc cattttagag chr12:75457911-75458411 + 53 7.53e-16 tctacaactg tataagacagacactcccagagcggc cattttagag chr13:52309839-52310339 + 55 9.83e-16 tcttcaactg cgtaagacagacactcccagagcggc catttataga chr13:52502222-52502722 - 18 9.83e-16 TCTTCAACTG CGTAAGACAGACACTCCCAGAGCGGC CATTTATAGA chr2:39790361-39790861 + 53 1.87e-15 tcttcaactg cataagacagacagtcccagagcggc cattttagag chr12:56882349-56882849 + 49 2.44e-15 tcttcaactg cataagacggacactcccagagcggc catttataga chr10:89620156-89620656 - 49 2.44e-15 TCTTCAACTG CATAAGGCAGACACTCCCAGAGCGGC CATTTTAGAG chr17:28262056-28262556 - 19 3.34e-15 ATCACAACTG TATAAGACAGACATTCCCAGAGCGGC CATTTTAGAG chr12:62463165-62463665 - 58 6.47e-15 ATCTCAACCG CATAAGACAGATACTCCCAGAGCAGC TGTTTATAGA chr5:92795579-92796079 + 62 7.26e-15 gcttcaacca cgtaagacagacactcccagagtggc catccataga chrX:13637183-13637683 + 48 7.73e-15 atctcaaccg cataagacagacactctcagagcggc tgtttataga chr10:130117518-13011801 + 68 7.73e-15 atctcaactg cataagacaaacactcccagagcggc catctat chr1:93833276-93833776 + 51 7.73e-15 tctacaactg cataagacagacactcccagagcggt cattttagaa chr1:83251628-83252128 + 32 8.34e-15 atctcaactg cataaaacagacactcccagagcagc catttataga chr1:85714471-85714971 + 62 9.33e-15 tcttcaactg cataagacggacactcccagagcagc cattttagag chr5:180828680-180829180 - 49 9.33e-15 ATCGCTACCG CATAGGACAGACACTCCCAGAGCAGC CATTTATAGA chr12:52761121-52761621 + 69 1.16e-14 tctacaactg tataagacagacattcccagagcagc catttt chr17:80155457-80155957 - 14 1.31e-14 TCTTCAACCA CATAAAACAGACACTCCCAGAGTGGC CATTTTAGAG chr13:66760618-66761118 - 10 1.31e-14 TCTACAACTG CATAAGATAGACACTCCCAGAGCAGC CATTTTCGA chr17:27695198-27695698 + 66 1.53e-14 tctacaactg cataagacagacactcctagagtggc cattttaga chr16:3205892-3206392 - 32 2.17e-14 ATCTCAACTG CATAAGACAGACTCTCCCAGAGCAGC CATTTATAGA chr1:184783656-184784156 - 51 2.17e-14 ATCTCAACCG CATAAGACAGACACTTCCAGAGTGGC CCTTTATAGA chr6:25157758-25158258 - 45 2.38e-14 ATCTCAACTG CACAAGACAGACAGTCCCAGAGCGGC CGTTTATAGA chr10:95732873-95733373 + 40 2.38e-14 tcttcaacca taaaagacagacattcccagagcggc cagtttagag chr4:128265521-128266021 + 44 3.13e-14 tctacaactg cataagacagacactcccagagttgc cattttagag chr17:60093062-60093562 + 27 3.47e-14 aactcaaccg cataggacagacattcccagagcagc cctttataga chr1:155642452-155642952 + 53 4.96e-14 atctcaaccg cgtaagacagacactcccaaagcagc cgtttataga chr5:134284395-134284895 + 61 5.71e-14 tcttcaactg cacaagacagatactcccagagcagc cattttagag chr12:105313695-10531419 - 33 1.55e-13 TCTTCAACCG TATAAGACAGACATTCCTAGAGCAGC CATTTTAGAG chr6:112328836-112329336 + 21 1.79e-13 tctacaactg cataaagcagacactcccagagtggc cattttagag chr6:130644705-130645205 + 70 7.86e-13 ttaacaacca taaaagacagacattcccaaagtggc cattt chr8:93908072-93908572 + 49 1.20e-12 atctgcaatc gtaaagacagacattcccagagcggc cattttagag chr6:132109751-132110251 + 19 1.28e-12 tcttcaactg cataagacagaaacttctagagcggc cattttagag chr19:27944530-27945030 - 59 1.90e-12 ATCTCAACTG CACAACATAGACATTCCCAGAGCGGC CATTTATAGA chr1:203234864-203235364 - 14 1.67e-11 TCTACAACAG TAAAAGACAGATGTCCCCAGAGCGGC CATTTTAGAG chr8:106077131-106077631 - 16 4.89e-11 TCTACAACCA TTAAAGACAGATGTTCCCAAAGCGGC CATTTTAGAG chr8:57597512-57598012 - 47 8.99e-11 TCCACAACTG CATAAGACAGACACTCCCGAGCCGCC ATTTTAGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAGACAGACACTCCCAGAGCGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:34570071-34570571 1.3e-16 11_[-1]_63 chr1:32458742-32459242 1.3e-16 38_[-1]_36 chr6:33152106-33152606 1.3e-16 43_[+1]_31 chr8:38022454-38022954 1.3e-16 12_[+1]_62 chr11:47875825-47876325 1.3e-16 38_[+1]_36 chr3:72075814-72076314 1.3e-16 49_[+1]_25 chr2:46642819-46643319 1.3e-16 43_[+1]_31 chr20:56520914-56521414 1.3e-16 55_[+1]_19 chr12:106620554-10662105 1.3e-16 42_[+1]_32 chr11:128998967-12899946 1.3e-16 49_[-1]_25 chr3:138486523-138487023 1.3e-16 45_[+1]_29 chr5:80902597-80903097 2.8e-16 36_[+1]_38 chr12:235630-236130 4.4e-16 39_[-1]_35 chr5:134262627-134263127 7.5e-16 42_[+1]_32 chr12:75457911-75458411 7.5e-16 52_[+1]_22 chr13:52309839-52310339 9.8e-16 54_[+1]_20 chr13:52502222-52502722 9.8e-16 17_[-1]_57 chr2:39790361-39790861 1.9e-15 52_[+1]_22 chr12:56882349-56882849 2.4e-15 48_[+1]_26 chr10:89620156-89620656 2.4e-15 48_[-1]_26 chr17:28262056-28262556 3.3e-15 18_[-1]_56 chr12:62463165-62463665 6.5e-15 57_[-1]_17 chr5:92795579-92796079 7.3e-15 61_[+1]_13 chrX:13637183-13637683 7.7e-15 47_[+1]_27 chr10:130117518-13011801 7.7e-15 67_[+1]_7 chr1:93833276-93833776 7.7e-15 50_[+1]_24 chr1:83251628-83252128 8.3e-15 31_[+1]_43 chr1:85714471-85714971 9.3e-15 61_[+1]_13 chr5:180828680-180829180 9.3e-15 48_[-1]_26 chr12:52761121-52761621 1.2e-14 68_[+1]_6 chr17:80155457-80155957 1.3e-14 13_[-1]_61 chr13:66760618-66761118 1.3e-14 9_[-1]_65 chr17:27695198-27695698 1.5e-14 65_[+1]_9 chr16:3205892-3206392 2.2e-14 31_[-1]_43 chr1:184783656-184784156 2.2e-14 50_[-1]_24 chr6:25157758-25158258 2.4e-14 44_[-1]_30 chr10:95732873-95733373 2.4e-14 39_[+1]_35 chr4:128265521-128266021 3.1e-14 43_[+1]_31 chr17:60093062-60093562 3.5e-14 26_[+1]_48 chr1:155642452-155642952 5e-14 52_[+1]_22 chr5:134284395-134284895 5.7e-14 60_[+1]_14 chr12:105313695-10531419 1.5e-13 32_[-1]_42 chr6:112328836-112329336 1.8e-13 20_[+1]_54 chr6:130644705-130645205 7.9e-13 69_[+1]_5 chr8:93908072-93908572 1.2e-12 48_[+1]_26 chr6:132109751-132110251 1.3e-12 18_[+1]_56 chr19:27944530-27945030 1.9e-12 58_[-1]_16 chr1:203234864-203235364 1.7e-11 13_[-1]_61 chr8:106077131-106077631 4.9e-11 15_[-1]_59 chr8:57597512-57598012 9e-11 46_[-1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAGACAGACACTCCCAGAGCGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATAAGACAGACACTCCCAGAGCGGC width=26 seqs=50 chr19:34570071-34570571 ( 12) CATAAGACAGACACTCCCAGAGCGGC 1 chr1:32458742-32459242 ( 39) CATAAGACAGACACTCCCAGAGCGGC 1 chr6:33152106-33152606 ( 44) CATAAGACAGACACTCCCAGAGCGGC 1 chr8:38022454-38022954 ( 13) CATAAGACAGACACTCCCAGAGCGGC 1 chr11:47875825-47876325 ( 39) CATAAGACAGACACTCCCAGAGCGGC 1 chr3:72075814-72076314 ( 50) CATAAGACAGACACTCCCAGAGCGGC 1 chr2:46642819-46643319 ( 44) CATAAGACAGACACTCCCAGAGCGGC 1 chr20:56520914-56521414 ( 56) CATAAGACAGACACTCCCAGAGCGGC 1 chr12:106620554-10662105 ( 43) CATAAGACAGACACTCCCAGAGCGGC 1 chr11:128998967-12899946 ( 50) CATAAGACAGACACTCCCAGAGCGGC 1 chr3:138486523-138487023 ( 46) CATAAGACAGACACTCCCAGAGCGGC 1 chr5:80902597-80903097 ( 37) CATAAGACAGACACTCCCAGAGCAGC 1 chr12:235630-236130 ( 40) CATAAGACAGACATTCCCAGAGCGGC 1 chr5:134262627-134263127 ( 43) CATAAGACAGACACTCCCAGAGTGGC 1 chr12:75457911-75458411 ( 53) TATAAGACAGACACTCCCAGAGCGGC 1 chr13:52309839-52310339 ( 55) CGTAAGACAGACACTCCCAGAGCGGC 1 chr13:52502222-52502722 ( 18) CGTAAGACAGACACTCCCAGAGCGGC 1 chr2:39790361-39790861 ( 53) CATAAGACAGACAGTCCCAGAGCGGC 1 chr12:56882349-56882849 ( 49) CATAAGACGGACACTCCCAGAGCGGC 1 chr10:89620156-89620656 ( 49) CATAAGGCAGACACTCCCAGAGCGGC 1 chr17:28262056-28262556 ( 19) TATAAGACAGACATTCCCAGAGCGGC 1 chr12:62463165-62463665 ( 58) CATAAGACAGATACTCCCAGAGCAGC 1 chr5:92795579-92796079 ( 62) CGTAAGACAGACACTCCCAGAGTGGC 1 chrX:13637183-13637683 ( 48) CATAAGACAGACACTCTCAGAGCGGC 1 chr10:130117518-13011801 ( 68) CATAAGACAAACACTCCCAGAGCGGC 1 chr1:93833276-93833776 ( 51) CATAAGACAGACACTCCCAGAGCGGT 1 chr1:83251628-83252128 ( 32) CATAAAACAGACACTCCCAGAGCAGC 1 chr1:85714471-85714971 ( 62) CATAAGACGGACACTCCCAGAGCAGC 1 chr5:180828680-180829180 ( 49) CATAGGACAGACACTCCCAGAGCAGC 1 chr12:52761121-52761621 ( 69) TATAAGACAGACATTCCCAGAGCAGC 1 chr17:80155457-80155957 ( 14) CATAAAACAGACACTCCCAGAGTGGC 1 chr13:66760618-66761118 ( 10) CATAAGATAGACACTCCCAGAGCAGC 1 chr17:27695198-27695698 ( 66) CATAAGACAGACACTCCTAGAGTGGC 1 chr16:3205892-3206392 ( 32) CATAAGACAGACTCTCCCAGAGCAGC 1 chr1:184783656-184784156 ( 51) CATAAGACAGACACTTCCAGAGTGGC 1 chr6:25157758-25158258 ( 45) CACAAGACAGACAGTCCCAGAGCGGC 1 chr10:95732873-95733373 ( 40) TAAAAGACAGACATTCCCAGAGCGGC 1 chr4:128265521-128266021 ( 44) CATAAGACAGACACTCCCAGAGTTGC 1 chr17:60093062-60093562 ( 27) CATAGGACAGACATTCCCAGAGCAGC 1 chr1:155642452-155642952 ( 53) CGTAAGACAGACACTCCCAAAGCAGC 1 chr5:134284395-134284895 ( 61) CACAAGACAGATACTCCCAGAGCAGC 1 chr12:105313695-10531419 ( 33) TATAAGACAGACATTCCTAGAGCAGC 1 chr6:112328836-112329336 ( 21) CATAAAGCAGACACTCCCAGAGTGGC 1 chr6:130644705-130645205 ( 70) TAAAAGACAGACATTCCCAAAGTGGC 1 chr8:93908072-93908572 ( 49) GTAAAGACAGACATTCCCAGAGCGGC 1 chr6:132109751-132110251 ( 19) CATAAGACAGAAACTTCTAGAGCGGC 1 chr19:27944530-27945030 ( 59) CACAACATAGACATTCCCAGAGCGGC 1 chr1:203234864-203235364 ( 14) TAAAAGACAGATGTCCCCAGAGCGGC 1 chr8:106077131-106077631 ( 16) TTAAAGACAGATGTTCCCAAAGCGGC 1 chr8:57597512-57598012 ( 47) CATAAGACAGACACTCCCGAGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAGACAGACACTCCCAGAGCGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 44925 bayes= 8.63912 E= 4.3e-404 -1229 187 -349 -78 168 -1229 -149 -278 -146 -190 -1229 161 186 -1229 -1229 -1229 180 -1229 -249 -1229 -220 -349 203 -1229 180 -1229 -249 -1229 -1229 210 -1229 -278 180 -1229 -249 -1229 -378 -1229 213 -1229 186 -1229 -1229 -1229 -378 200 -1229 -178 177 -1229 -249 -378 -1229 172 -249 -32 -1229 -349 -1229 183 -1229 210 -1229 -278 -1229 213 -1229 -378 -1229 207 -1229 -220 183 -1229 -349 -1229 -178 -1229 203 -1229 183 -1229 -349 -1229 -1229 -349 213 -1229 -1229 190 -1229 -78 -20 -1229 172 -378 -1229 -349 213 -1229 -1229 213 -1229 -378 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAGACAGACACTCCCAGAGCGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 50 E= 4.3e-404 0.000000 0.820000 0.020000 0.160000 0.880000 0.000000 0.080000 0.040000 0.100000 0.060000 0.000000 0.840000 1.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.060000 0.020000 0.920000 0.000000 0.960000 0.000000 0.040000 0.000000 0.000000 0.960000 0.000000 0.040000 0.960000 0.000000 0.040000 0.000000 0.020000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.900000 0.000000 0.080000 0.940000 0.000000 0.040000 0.020000 0.000000 0.740000 0.040000 0.220000 0.000000 0.020000 0.000000 0.980000 0.000000 0.960000 0.000000 0.040000 0.000000 0.980000 0.000000 0.020000 0.000000 0.940000 0.000000 0.060000 0.980000 0.000000 0.020000 0.000000 0.080000 0.000000 0.920000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.020000 0.980000 0.000000 0.000000 0.840000 0.000000 0.160000 0.240000 0.000000 0.740000 0.020000 0.000000 0.020000 0.980000 0.000000 0.000000 0.980000 0.000000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAGACAGACACTCCCAGAGCGGC MEME-1 regular expression -------------------------------------------------------------------------------- CATAAGACAGACA[CT]TCCCAGAGC[GA]GC -------------------------------------------------------------------------------- Time 475.84 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGAGACCAGGGCDTATTT MEME-2 width = 19 sites = 45 llr = 987 E-value = 6.6e-217 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGAGACCAGGGCDTATTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8::a:a::8::::2:a::: pos.-specific C ::::::a8::::8:::::: probability G 2aa:a:::2aaa:4::::: matrix T :::::::1::::23a:aaa bits 2.2 * * 1.9 ****** *** * 1.7 ****** *** * *** 1.5 ****** *** ***** Relative 1.3 ******* **** ***** Entropy 1.1 ************* ***** (31.6 bits) 0.9 ************* ***** 0.6 ************* ***** 0.4 ******************* 0.2 ******************* 0.0 ------------------- Multilevel AGGAGACCAGGGCGTATTT consensus G G T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGACCAGGGCDTATTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chr5:134284395-134284895 + 23 2.96e-12 agggcactgc aggagaccagggcgtattt catcccttat chr6:33152106-33152606 + 7 2.96e-12 tactgc aggagaccagggcgtattt cagtccttat chr1:85714471-85714971 + 24 2.96e-12 agggcgctgc aggagaccagggcgtattt tatcccttat chr3:72075814-72076314 + 12 2.96e-12 agggcactgc aggagaccagggcgtattt catcccttat chr20:56520914-56521414 + 18 2.96e-12 ggagagctgc aggagaccagggcgtattt catcccttat chrX:13637183-13637683 + 11 2.96e-12 acggtactgc aggagaccagggcgtattt cagtccttat chr10:130117518-13011801 + 31 2.96e-12 agggcactgc aggagaccagggcgtattt cagtccttat chr17:27686292-27686792 + 57 2.96e-12 agggcactgc aggagaccagggcgtattt agtcccttat chr13:52309839-52310339 + 17 2.96e-12 agggcactgc aggagaccagggcgtattt catcccttat chr12:56653753-56654253 - 45 6.60e-12 GGGGTGCTAC AGGAGACCAGGGCTTATTT CATCCCTTAT chr12:52761121-52761621 + 31 6.60e-12 ggagcgctac aggagaccagggcttattt catcccttat chr5:92795579-92796079 + 24 6.60e-12 aaggtactgc aggagaccagggcttattt catcccttag chr6:33101076-33101576 + 44 1.02e-11 agggcactgc aggagaccagggcatattt catcccttat chr4:128265521-128266021 + 6 1.02e-11 gctgc aggagaccagggcatattt catcccttat chr16:3205892-3206392 - 76 1.02e-11 TACTGC AGGAGACCAGGGCATATTT CAGTCCTTAT chr12:56882349-56882849 + 11 1.02e-11 agggcactgc aggagaccagggcatattt catcccttat chr6:30869211-30869711 - 24 1.02e-11 AGGGTACTGC AGGAGACCAGGGCATATTT CAGTCCTTAT chr13:66760618-66761118 - 55 1.02e-11 GGGGTGCTGA AGGAGACCAGGGCATATTT CATCCCTTAT chr11:47875825-47876325 + 2 1.50e-11 c gggagaccagggcgtattt cagtccttat chr1:84287378-84287878 - 39 2.09e-11 AGGGCACTGC AGGAGACCGGGGCTTATTT CATCCCTTAT chr6:130644705-130645205 + 32 2.09e-11 gaagcactac gggagaccagggcttattt catcccttat chr12:75457911-75458411 + 15 3.05e-11 ggggcgctgc aggagaccagggtgtattt catcctttat chr1:155642452-155642952 + 16 3.05e-11 aaggtactgc aggagaccagggtgtattt cagtcattat chr2:46642819-46643319 + 6 3.05e-11 actgc aggagaccagggtgtattt catcccttat chr1:93833276-93833776 + 13 3.05e-11 ggagcgctgc aggagaccagggtgtattt catcccttat chr2:39790361-39790861 + 15 3.05e-11 agggcgctgc aggagaccagggtgtattt catcccttat chr8:93908072-93908572 + 12 4.75e-11 gaagtgctac gggagaccggggcttattt catcccttat chr3:191993906-191994406 + 34 4.75e-11 ggagtgctgc gggagaccggggcttattt catcccttat chr17:27695198-27695698 + 28 5.88e-11 caggcattgc aggagactagggcatattt catcccttat chr17:28262056-28262556 - 63 5.88e-11 GGGGTGCTAG GGGAGACCGGGGCATATTT CATCCCTTAT chr3:138486523-138487023 + 9 7.43e-11 ggtactgc aggagaccaaggcgtattt cagtccttat chr11:27135765-27136265 - 41 1.04e-10 AGTGCACTTC AGGAGACGAGGGCGTATTT CATCCCTTAT chr10:95732873-95733373 + 2 1.69e-10 c tggagaccagggcttattt catcccttat chr12:106620554-10662105 + 6 2.14e-10 actgc aggagaccagggcatatct cagtccttat chr3:15738615-15739115 + 18 2.79e-10 ggagcgctat gggagactggggcttattt catcccttat chr11:110421590-11042209 + 33 2.79e-10 ggagtgctac gggagactggggcttattt catcccttat chr11:94219729-94220229 + 42 3.24e-10 agggtgctgc aggagaccagagcatattt catcccttat chr17:80155457-80155957 - 59 4.08e-10 AGGGCACTAC AGGAGACCAAGGTGTATTT CATCCCTTAT chr5:134262627-134263127 + 5 4.98e-10 ctgc aggagaccagggtgtactt cctcccttat chr7:42554897-42555397 - 45 8.19e-10 GGGGCGCTGC AGGAGACTAGGGCATGTTT CATCCCTATC chr12:105313695-10531419 - 78 9.96e-10 CTAT GAGAGACCGGGGCTTATTT CATCCCTTAT chr13:52502222-52502722 - 63 1.99e-09 AGGGCACTGC AGAAGACCAGGGAGTATTT CATCCCTTAT chr8:106077131-106077631 - 61 2.56e-09 GGAGTGCTAT GGGAGACTGGGGCTCATTT CATCCCTTAT chr1:203234864-203235364 - 59 3.27e-09 GGAGTGCTAC GGGAGACTGGTGCTTATTT CATCCCTTAT chr10:73258569-73259069 - 27 4.59e-09 GGGGCGCTAC AGGAAACCGGGGCTTTTTT CATCCCTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGACCAGGGCDTATTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:134284395-134284895 3e-12 22_[+2]_59 chr6:33152106-33152606 3e-12 6_[+2]_75 chr1:85714471-85714971 3e-12 23_[+2]_58 chr3:72075814-72076314 3e-12 11_[+2]_70 chr20:56520914-56521414 3e-12 17_[+2]_64 chrX:13637183-13637683 3e-12 10_[+2]_71 chr10:130117518-13011801 3e-12 30_[+2]_51 chr17:27686292-27686792 3e-12 56_[+2]_25 chr13:52309839-52310339 3e-12 16_[+2]_65 chr12:56653753-56654253 6.6e-12 44_[-2]_37 chr12:52761121-52761621 6.6e-12 30_[+2]_51 chr5:92795579-92796079 6.6e-12 23_[+2]_58 chr6:33101076-33101576 1e-11 43_[+2]_38 chr4:128265521-128266021 1e-11 5_[+2]_76 chr16:3205892-3206392 1e-11 75_[-2]_6 chr12:56882349-56882849 1e-11 10_[+2]_71 chr6:30869211-30869711 1e-11 23_[-2]_58 chr13:66760618-66761118 1e-11 54_[-2]_27 chr11:47875825-47876325 1.5e-11 1_[+2]_80 chr1:84287378-84287878 2.1e-11 38_[-2]_43 chr6:130644705-130645205 2.1e-11 31_[+2]_50 chr12:75457911-75458411 3.1e-11 14_[+2]_67 chr1:155642452-155642952 3.1e-11 15_[+2]_66 chr2:46642819-46643319 3.1e-11 5_[+2]_76 chr1:93833276-93833776 3.1e-11 12_[+2]_69 chr2:39790361-39790861 3.1e-11 14_[+2]_67 chr8:93908072-93908572 4.7e-11 11_[+2]_70 chr3:191993906-191994406 4.7e-11 33_[+2]_48 chr17:27695198-27695698 5.9e-11 27_[+2]_54 chr17:28262056-28262556 5.9e-11 62_[-2]_19 chr3:138486523-138487023 7.4e-11 8_[+2]_73 chr11:27135765-27136265 1e-10 40_[-2]_41 chr10:95732873-95733373 1.7e-10 1_[+2]_80 chr12:106620554-10662105 2.1e-10 5_[+2]_76 chr3:15738615-15739115 2.8e-10 17_[+2]_64 chr11:110421590-11042209 2.8e-10 32_[+2]_49 chr11:94219729-94220229 3.2e-10 41_[+2]_40 chr17:80155457-80155957 4.1e-10 58_[-2]_23 chr5:134262627-134263127 5e-10 4_[+2]_77 chr7:42554897-42555397 8.2e-10 44_[-2]_37 chr12:105313695-10531419 1e-09 77_[-2]_4 chr13:52502222-52502722 2e-09 62_[-2]_19 chr8:106077131-106077631 2.6e-09 60_[-2]_21 chr1:203234864-203235364 3.3e-09 58_[-2]_23 chr10:73258569-73259069 4.6e-09 26_[-2]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGACCAGGGCDTATTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGAGACCAGGGCDTATTT width=19 seqs=45 chr5:134284395-134284895 ( 23) AGGAGACCAGGGCGTATTT 1 chr6:33152106-33152606 ( 7) AGGAGACCAGGGCGTATTT 1 chr1:85714471-85714971 ( 24) AGGAGACCAGGGCGTATTT 1 chr3:72075814-72076314 ( 12) AGGAGACCAGGGCGTATTT 1 chr20:56520914-56521414 ( 18) AGGAGACCAGGGCGTATTT 1 chrX:13637183-13637683 ( 11) AGGAGACCAGGGCGTATTT 1 chr10:130117518-13011801 ( 31) AGGAGACCAGGGCGTATTT 1 chr17:27686292-27686792 ( 57) AGGAGACCAGGGCGTATTT 1 chr13:52309839-52310339 ( 17) AGGAGACCAGGGCGTATTT 1 chr12:56653753-56654253 ( 45) AGGAGACCAGGGCTTATTT 1 chr12:52761121-52761621 ( 31) AGGAGACCAGGGCTTATTT 1 chr5:92795579-92796079 ( 24) AGGAGACCAGGGCTTATTT 1 chr6:33101076-33101576 ( 44) AGGAGACCAGGGCATATTT 1 chr4:128265521-128266021 ( 6) AGGAGACCAGGGCATATTT 1 chr16:3205892-3206392 ( 76) AGGAGACCAGGGCATATTT 1 chr12:56882349-56882849 ( 11) AGGAGACCAGGGCATATTT 1 chr6:30869211-30869711 ( 24) AGGAGACCAGGGCATATTT 1 chr13:66760618-66761118 ( 55) AGGAGACCAGGGCATATTT 1 chr11:47875825-47876325 ( 2) GGGAGACCAGGGCGTATTT 1 chr1:84287378-84287878 ( 39) AGGAGACCGGGGCTTATTT 1 chr6:130644705-130645205 ( 32) GGGAGACCAGGGCTTATTT 1 chr12:75457911-75458411 ( 15) AGGAGACCAGGGTGTATTT 1 chr1:155642452-155642952 ( 16) AGGAGACCAGGGTGTATTT 1 chr2:46642819-46643319 ( 6) AGGAGACCAGGGTGTATTT 1 chr1:93833276-93833776 ( 13) AGGAGACCAGGGTGTATTT 1 chr2:39790361-39790861 ( 15) AGGAGACCAGGGTGTATTT 1 chr8:93908072-93908572 ( 12) GGGAGACCGGGGCTTATTT 1 chr3:191993906-191994406 ( 34) GGGAGACCGGGGCTTATTT 1 chr17:27695198-27695698 ( 28) AGGAGACTAGGGCATATTT 1 chr17:28262056-28262556 ( 63) GGGAGACCGGGGCATATTT 1 chr3:138486523-138487023 ( 9) AGGAGACCAAGGCGTATTT 1 chr11:27135765-27136265 ( 41) AGGAGACGAGGGCGTATTT 1 chr10:95732873-95733373 ( 2) TGGAGACCAGGGCTTATTT 1 chr12:106620554-10662105 ( 6) AGGAGACCAGGGCATATCT 1 chr3:15738615-15739115 ( 18) GGGAGACTGGGGCTTATTT 1 chr11:110421590-11042209 ( 33) GGGAGACTGGGGCTTATTT 1 chr11:94219729-94220229 ( 42) AGGAGACCAGAGCATATTT 1 chr17:80155457-80155957 ( 59) AGGAGACCAAGGTGTATTT 1 chr5:134262627-134263127 ( 5) AGGAGACCAGGGTGTACTT 1 chr7:42554897-42555397 ( 45) AGGAGACTAGGGCATGTTT 1 chr12:105313695-10531419 ( 78) GAGAGACCGGGGCTTATTT 1 chr13:52502222-52502722 ( 63) AGAAGACCAGGGAGTATTT 1 chr8:106077131-106077631 ( 61) GGGAGACTGGGGCTCATTT 1 chr1:203234864-203235364 ( 59) GGGAGACTGGTGCTTATTT 1 chr10:73258569-73259069 ( 27) AGGAAACCGGGGCTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGACCAGGGCDTATTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 49118 bayes= 10.4702 E= 6.6e-217 146 -1214 -1 -363 -363 -1214 212 -1214 -363 -1214 212 -1214 186 -1214 -1214 -1214 -363 -1214 212 -1214 186 -1214 -1214 -1214 -1214 215 -1214 -1214 -1214 191 -333 -105 150 -1214 -1 -1214 -263 -1214 209 -1214 -363 -1214 209 -363 -1214 -1214 215 -1214 -363 187 -1214 -82 -17 -1214 99 18 -1214 -333 -1214 183 179 -1214 -333 -363 -1214 -333 -1214 183 -1214 -333 -1214 183 -1214 -1214 -1214 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGACCAGGGCDTATTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 45 E= 6.6e-217 0.755556 0.000000 0.222222 0.022222 0.022222 0.000000 0.977778 0.000000 0.022222 0.000000 0.977778 0.000000 1.000000 0.000000 0.000000 0.000000 0.022222 0.000000 0.977778 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.844444 0.022222 0.133333 0.777778 0.000000 0.222222 0.000000 0.044444 0.000000 0.955556 0.000000 0.022222 0.000000 0.955556 0.022222 0.000000 0.000000 1.000000 0.000000 0.022222 0.822222 0.000000 0.155556 0.244444 0.000000 0.444444 0.311111 0.000000 0.022222 0.000000 0.977778 0.955556 0.000000 0.022222 0.022222 0.000000 0.022222 0.000000 0.977778 0.000000 0.022222 0.000000 0.977778 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGACCAGGGCDTATTT MEME-2 regular expression -------------------------------------------------------------------------------- [AG]GGAGACC[AG]GGGC[GTA]TATTT -------------------------------------------------------------------------------- Time 886.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTAKAGACCTCCCCC MEME-3 width = 16 sites = 45 llr = 867 E-value = 1.5e-172 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTAKAGACCTCCCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:a:a:::1:::: pos.-specific C ::::::::aa:89aaa probability G ::::4:a::::::::: matrix T aaa:6:::::9:1::: bits 2.2 * 1.9 ** ** ** *** 1.7 **** ***** **** 1.5 **** ****** **** Relative 1.3 **** *********** Entropy 1.1 **** *********** (27.8 bits) 0.9 **************** 0.6 **************** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel TTTATAGACCTCCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAKAGACCTCCCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr6:52200061-52200561 + 55 2.13e-10 agagtggcca tttatagacctccccc tgggaatgca chr14:90823412-90823912 - 49 2.13e-10 AGAGTGGCCG TTTATAGACCTCCCCC CAGGAATGCA chr1:32458742-32459242 - 21 2.13e-10 AGAGCGGCCA TTTATAGACCTCCCCC CAGGAATGCA chr19:40919454-40919954 - 46 2.13e-10 AGAGCAGCCA TTTATAGACCTCCCCC CAGGAACGCA chr6:33152106-33152606 + 72 2.13e-10 agagcggctg tttatagacctccccc ccaggaatgc chr16:3205892-3206392 - 14 2.13e-10 AGAGCAGCCA TTTATAGACCTCCCCC GAGGAGTGCA chr8:38022454-38022954 + 41 2.13e-10 agagcggcca tttatagacctccccc caggaatgca chr11:9452022-9452522 + 12 2.13e-10 aaagcgacct tttatagacctccccc caggaatgcg chr17:60093062-60093562 + 55 2.13e-10 agagcagccc tttatagacctccccc caggaatgca chr1:155642452-155642952 + 81 2.13e-10 aaagcagccg tttatagacctccccc cagg chr12:235630-236130 - 22 2.13e-10 AGAGCGGCCA TTTATAGACCTCCCCC CAGGAATGCA chr11:47875825-47876325 + 67 2.13e-10 agagcggcag tttatagacctccccc agaaatgcat chr1:184783656-184784156 - 33 2.13e-10 AGAGTGGCCC TTTATAGACCTCCCCC CAGGAATGCA chr3:15620077-15620577 + 35 2.13e-10 agaacggccg tttatagacctccccc caggagcgca chrX:13637183-13637683 + 76 2.13e-10 agagcggctg tttatagacctccccc caggaatgc chr7:128239001-128239501 - 47 2.13e-10 AGAGCGGCCA TTTATAGACCTCCCCC CAGGAATGCA chr3:197967587-197968087 + 17 2.13e-10 agagtggcca tttatagacctccccc aaggaatgca chr6:25157758-25158258 - 27 2.13e-10 AGAGCGGCCG TTTATAGACCTCCCCC AAGGAACGCA chr12:62463165-62463665 - 40 2.13e-10 AGAGCAGCTG TTTATAGACCTCCCCC AGTGAATGCA chr3:138486523-138487023 + 74 2.13e-10 agagcggcca tttatagacctccccc caggaatgca chr5:134262627-134263127 + 72 3.87e-10 gagtggccat tttagagacctccccc tgggaatgcg chr4:128265521-128266021 + 73 3.87e-10 gagttgccat tttagagacctccccc tgggaatgca chr8:57597512-57598012 - 29 3.87e-10 GAGCCGCCAT TTTAGAGACCTCCCCC TGGGAATGCA chr2:46642819-46643319 + 73 3.87e-10 gagcggctat tttagagacctccccc tgggaatgca chr6:132109751-132110251 + 48 3.87e-10 gagcggccat tttagagacctccccc tggaaatgca chr20:56520914-56521414 + 85 3.87e-10 gagcggccat tttagagacctccccc chr16:53384450-53384950 - 46 3.87e-10 GAGCAGCCAT TTTAGAGACCTCCCCC TGGGAATGCT chr10:89620156-89620656 - 30 3.87e-10 GAGCGGCCAT TTTAGAGACCTCCCCC TGGGAATGCA chr5:180828680-180829180 - 31 6.50e-10 AGAGCAGCCA TTTATAGACCTACCCC CAGGAATGCA chr8:93908072-93908572 + 78 1.04e-09 gagcggccat tttagagacctacccc tgagaat chr5:80902597-80903097 + 66 1.04e-09 gagcagccat tttagagacctacccc tgggaatgca chr10:95732873-95733373 + 69 1.04e-09 gagcggccag tttagagacctacccc tgggaatgca chr13:52309839-52310339 + 83 1.30e-09 agagcggcca tttatagacctctccc tg chr12:75457911-75458411 + 82 1.73e-09 gagcggccat tttagagacctctccc tgg chr1:83251628-83252128 + 60 1.73e-09 agagcagcca tttatagaccaccccc caggaatgca chr12:106620554-10662105 + 71 1.73e-09 agagcggctg tttatagaccaccccc caggaatgca chr19:27944530-27945030 - 41 2.64e-09 AGAGCGGCCA TTTATAGACCTCCCCT CAGAATGCAT chr11:128998967-12899946 - 31 4.32e-09 GAGCGGCCAT GTTAGAGACCTCCCCC TGGGAATGCA chr12:56882349-56882849 + 77 5.81e-09 agagcggcca tttatagacctccacc tgggaatg chr6:112328836-112329336 + 50 8.15e-09 gagtggccat tttagagacctatccc tgggaatgca chr3:72075814-72076314 + 79 8.75e-09 gagcggccat tttacagaccttcccc tgggaa chr12:105313695-10531419 - 14 4.73e-08 GAGCAGCCAT TTTAGAGACCGCCCAC TAGGAACACA chr2:39790361-39790861 + 82 5.85e-08 gagcggccat tttagagatctccctc tgg chr1:93833276-93833776 + 80 2.33e-07 gagcggtcat tttagaagcctcccct gggaa chr19:34345744-34346244 + 24 3.87e-07 GGTGTAGTTT TCTACAGACCTTGCCC CGAGGGCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAKAGACCTCCCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:52200061-52200561 2.1e-10 54_[+3]_30 chr14:90823412-90823912 2.1e-10 48_[-3]_36 chr1:32458742-32459242 2.1e-10 20_[-3]_64 chr19:40919454-40919954 2.1e-10 45_[-3]_39 chr6:33152106-33152606 2.1e-10 71_[+3]_13 chr16:3205892-3206392 2.1e-10 13_[-3]_71 chr8:38022454-38022954 2.1e-10 40_[+3]_44 chr11:9452022-9452522 2.1e-10 11_[+3]_73 chr17:60093062-60093562 2.1e-10 54_[+3]_30 chr1:155642452-155642952 2.1e-10 80_[+3]_4 chr12:235630-236130 2.1e-10 21_[-3]_63 chr11:47875825-47876325 2.1e-10 66_[+3]_18 chr1:184783656-184784156 2.1e-10 32_[-3]_52 chr3:15620077-15620577 2.1e-10 34_[+3]_50 chrX:13637183-13637683 2.1e-10 75_[+3]_9 chr7:128239001-128239501 2.1e-10 46_[-3]_38 chr3:197967587-197968087 2.1e-10 16_[+3]_68 chr6:25157758-25158258 2.1e-10 26_[-3]_58 chr12:62463165-62463665 2.1e-10 39_[-3]_45 chr3:138486523-138487023 2.1e-10 73_[+3]_11 chr5:134262627-134263127 3.9e-10 71_[+3]_13 chr4:128265521-128266021 3.9e-10 72_[+3]_12 chr8:57597512-57598012 3.9e-10 28_[-3]_56 chr2:46642819-46643319 3.9e-10 72_[+3]_12 chr6:132109751-132110251 3.9e-10 47_[+3]_37 chr20:56520914-56521414 3.9e-10 84_[+3] chr16:53384450-53384950 3.9e-10 45_[-3]_39 chr10:89620156-89620656 3.9e-10 29_[-3]_55 chr5:180828680-180829180 6.5e-10 30_[-3]_54 chr8:93908072-93908572 1e-09 77_[+3]_7 chr5:80902597-80903097 1e-09 65_[+3]_19 chr10:95732873-95733373 1e-09 68_[+3]_16 chr13:52309839-52310339 1.3e-09 82_[+3]_2 chr12:75457911-75458411 1.7e-09 81_[+3]_3 chr1:83251628-83252128 1.7e-09 59_[+3]_25 chr12:106620554-10662105 1.7e-09 70_[+3]_14 chr19:27944530-27945030 2.6e-09 40_[-3]_44 chr11:128998967-12899946 4.3e-09 30_[-3]_54 chr12:56882349-56882849 5.8e-09 76_[+3]_8 chr6:112328836-112329336 8.2e-09 49_[+3]_35 chr3:72075814-72076314 8.8e-09 78_[+3]_6 chr12:105313695-10531419 4.7e-08 13_[-3]_71 chr2:39790361-39790861 5.9e-08 81_[+3]_3 chr1:93833276-93833776 2.3e-07 79_[+3]_5 chr19:34345744-34346244 3.9e-07 23_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAKAGACCTCCCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTAKAGACCTCCCCC width=16 seqs=45 chr6:52200061-52200561 ( 55) TTTATAGACCTCCCCC 1 chr14:90823412-90823912 ( 49) TTTATAGACCTCCCCC 1 chr1:32458742-32459242 ( 21) TTTATAGACCTCCCCC 1 chr19:40919454-40919954 ( 46) TTTATAGACCTCCCCC 1 chr6:33152106-33152606 ( 72) TTTATAGACCTCCCCC 1 chr16:3205892-3206392 ( 14) TTTATAGACCTCCCCC 1 chr8:38022454-38022954 ( 41) TTTATAGACCTCCCCC 1 chr11:9452022-9452522 ( 12) TTTATAGACCTCCCCC 1 chr17:60093062-60093562 ( 55) TTTATAGACCTCCCCC 1 chr1:155642452-155642952 ( 81) TTTATAGACCTCCCCC 1 chr12:235630-236130 ( 22) TTTATAGACCTCCCCC 1 chr11:47875825-47876325 ( 67) TTTATAGACCTCCCCC 1 chr1:184783656-184784156 ( 33) TTTATAGACCTCCCCC 1 chr3:15620077-15620577 ( 35) TTTATAGACCTCCCCC 1 chrX:13637183-13637683 ( 76) TTTATAGACCTCCCCC 1 chr7:128239001-128239501 ( 47) TTTATAGACCTCCCCC 1 chr3:197967587-197968087 ( 17) TTTATAGACCTCCCCC 1 chr6:25157758-25158258 ( 27) TTTATAGACCTCCCCC 1 chr12:62463165-62463665 ( 40) TTTATAGACCTCCCCC 1 chr3:138486523-138487023 ( 74) TTTATAGACCTCCCCC 1 chr5:134262627-134263127 ( 72) TTTAGAGACCTCCCCC 1 chr4:128265521-128266021 ( 73) TTTAGAGACCTCCCCC 1 chr8:57597512-57598012 ( 29) TTTAGAGACCTCCCCC 1 chr2:46642819-46643319 ( 73) TTTAGAGACCTCCCCC 1 chr6:132109751-132110251 ( 48) TTTAGAGACCTCCCCC 1 chr20:56520914-56521414 ( 85) TTTAGAGACCTCCCCC 1 chr16:53384450-53384950 ( 46) TTTAGAGACCTCCCCC 1 chr10:89620156-89620656 ( 30) TTTAGAGACCTCCCCC 1 chr5:180828680-180829180 ( 31) TTTATAGACCTACCCC 1 chr8:93908072-93908572 ( 78) TTTAGAGACCTACCCC 1 chr5:80902597-80903097 ( 66) TTTAGAGACCTACCCC 1 chr10:95732873-95733373 ( 69) TTTAGAGACCTACCCC 1 chr13:52309839-52310339 ( 83) TTTATAGACCTCTCCC 1 chr12:75457911-75458411 ( 82) TTTAGAGACCTCTCCC 1 chr1:83251628-83252128 ( 60) TTTATAGACCACCCCC 1 chr12:106620554-10662105 ( 71) TTTATAGACCACCCCC 1 chr19:27944530-27945030 ( 41) TTTATAGACCTCCCCT 1 chr11:128998967-12899946 ( 31) GTTAGAGACCTCCCCC 1 chr12:56882349-56882849 ( 77) TTTATAGACCTCCACC 1 chr6:112328836-112329336 ( 50) TTTAGAGACCTATCCC 1 chr3:72075814-72076314 ( 79) TTTACAGACCTTCCCC 1 chr12:105313695-10531419 ( 14) TTTAGAGACCGCCCAC 1 chr2:39790361-39790861 ( 82) TTTAGAGATCTCCCTC 1 chr1:93833276-93833776 ( 80) TTTAGAAGCCTCCCCT 1 chr19:34345744-34346244 ( 24) TCTACAGACCTTGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAKAGACCTCCCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50915 bayes= 11.1889 E= 1.5e-172 -1214 -1214 -333 183 -1214 -333 -1214 183 -1214 -1214 -1214 186 186 -1214 -1214 -1214 -1214 -234 75 107 186 -1214 -1214 -1214 -363 -1214 212 -1214 183 -1214 -333 -1214 -1214 212 -1214 -363 -1214 215 -1214 -1214 -263 -1214 -333 176 -131 191 -1214 -263 -1214 202 -333 -205 -363 212 -1214 -1214 -363 209 -1214 -363 -1214 209 -1214 -263 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAKAGACCTCCCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 45 E= 1.5e-172 0.000000 0.000000 0.022222 0.977778 0.000000 0.022222 0.000000 0.977778 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.044444 0.377778 0.577778 1.000000 0.000000 0.000000 0.000000 0.022222 0.000000 0.977778 0.000000 0.977778 0.000000 0.022222 0.000000 0.000000 0.977778 0.000000 0.022222 0.000000 1.000000 0.000000 0.000000 0.044444 0.000000 0.022222 0.933333 0.111111 0.844444 0.000000 0.044444 0.000000 0.911111 0.022222 0.066667 0.022222 0.977778 0.000000 0.000000 0.022222 0.955556 0.000000 0.022222 0.000000 0.955556 0.000000 0.044444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAKAGACCTCCCCC MEME-3 regular expression -------------------------------------------------------------------------------- TTTA[TG]AGACCTCCCCC -------------------------------------------------------------------------------- Time 1299.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTTCTGRTGAGAARTCWGCTG MEME-4 width = 22 sites = 59 llr = 1044 E-value = 4.4e-184 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTTCTGRTGAGAARTCWGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3::1:1351291aa3::5:::: pos.-specific C :1:192:1:2::::::8::91: probability G 7121:1622618::7:1:9::a matrix T 198817127:1::::a15:19: bits 2.2 1.9 * 1.7 ** * * * 1.5 * ** * ** * Relative 1.3 * * *** ** **** Entropy 1.1 * * ******* **** (25.5 bits) 0.9 ***** * * ************ 0.6 ******* ************** 0.4 ******* ************** 0.2 ********************** 0.0 ---------------------- Multilevel GTTTCTGATGAGAAGTCTGCTG consensus A CAG C A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCTGRTGAGAARTCWGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr11:15266974-15267474 + 19 6.21e-14 ggcttgtatt gtttctgatgagaagtctgctg tcattcttat chr22:32706111-32706611 - 48 6.21e-14 GGCCTGCATA GTTTCTGATGAGAAGTCTGCTG TCATTCTTGT chr18:79930010-79930510 - 40 1.24e-13 GGACTCCATT GTTTCTGATGAGAAGTCAGCTG TTAATCTTAT chr11:76776399-76776899 + 49 3.02e-13 ggcctccaaa gtttctgatgagaaatctgctg acagtcttat chr1:224343544-224344044 + 22 4.91e-13 agcctccatg gtttctgatgagaaatcagctg ttaatcttat chr10:88395614-88396114 - 73 4.91e-13 ACCATA GTTTCTGATGAGAAATCAGCTG CTAATCCTAT chr10:92857870-92858370 + 11 1.08e-12 gggcttcatt atttctgatgagaagtcagctg ttaatcttat chr22:19648354-19648854 - 42 1.55e-12 GGCCTCCATA GTTTCTGGTGAGAAATCAGCTG TCAATCTTAT chr12:2070386-2070886 + 34 2.68e-12 ggattctatt gttgctgatgagaagtctgctg tcagtctaaa chr14:101209534-10121003 + 43 4.26e-12 gtgctgcaag gtttctgctgagaaatctgctg atagccttat chr14:103362742-10336324 + 71 4.26e-12 tgctgccaac gtttctgctgagaaatctgctg ttaatctt chr10:75301955-75302455 + 56 6.00e-12 ggcctccgtt gtttctgatgagaagttagctg tccattgtat chr16:58272782-58273282 + 45 8.24e-12 ggccttcatt gtttctgataagaaatcagctg ttaatcttgt chr1:228198939-228199439 + 24 1.42e-11 ggtatccatt gtttccaatgagaaatcagctg ttaatctcag chr1:225280575-225281075 - 15 1.66e-11 GTTCTCCATT GTGTCTGATAAGAAGTCAGCTG TAAATCTTAT chr8:36891576-36892076 + 28 1.90e-11 ggctttcatg gtttctgatgagaaattagctg ttaatcttat chr6:125111185-125111685 + 22 3.86e-11 gacctacaag gtttctgctaagaaatctgctg atagtctcat chr1:154295569-154296069 - 38 2.30e-10 GGTCTCCATT GTTTCTGAAGAGAAGTCTGCCG TTAATTGTGT chr5:125073020-125073520 - 60 4.09e-10 AGCATGAAAG GTTTCTGCTGAGAAATCTACTG ACAGTCTTAT chr10:94029924-94030424 + 33 5.14e-10 ggattgcatt gtttctgattaaaagtctgctg tcattcttat chr7:149710770-149711270 - 29 5.74e-10 GACTTTCATT GTTGCTATTGAAAAGTCTGCTG TCAGTCTAAT chr6:166052745-166053245 + 32 5.74e-10 ggcttgcata gtttctgataagaagtctgatg tcatccttaa chr1:197725036-197725536 - 25 8.94e-10 GGCTTCCATT GCTGCTATTGAGAAGTCTGCTG TCGATGTAAT chr10:129586859-12958735 + 17 1.36e-09 gacttgcatt gtttcggaccagaaatctgctg tcatccttat chr20:745630-746130 - 54 1.51e-09 GGCCTCCATC GTTTCACATGAGAAATCTGCTG TCGGTCTTAT chr2:112204349-112204849 - 51 1.68e-09 GGCTTCCATA GTTTCTGATGAGAAGTGACCTG TTACTCTTAT chr10:978773-979273 + 9 2.06e-09 ctctcaat gttactgttgagcagtcagctg tcacactcac chr12:105637436-10563793 - 38 2.06e-09 GGCTCTCGTG GTTTTTGATAAGAAGTCAGCCG TCAAATGACT chr6:107447577-107448077 - 74 2.28e-09 CCTGG ATGTCCAGGCAGAAGTCTGCTG CAGAGGTGGA chr6:160983326-160983826 + 33 2.28e-09 aaatacctgg atgtccaggcagaagtctgctg cagggttgga chr6:136831863-136832363 - 30 2.28e-09 AAACACCTGA ATGTCCAGGCAGAAGTCTGCTG CAAGGGAGGA chr19:31863135-31863635 - 16 2.52e-09 GGCTTCCATC ATTTCTTTGCAGAAGTCAGCTG TCAGTCCATC chr6:56172101-56172601 - 23 2.79e-09 GGCCTGCAAT GGTGCTATTGAGAAATCTGCTG ATAGTCTTAT chr19:19468346-19468846 - 62 3.40e-09 TGTTTCCATT GTCTCGAGTCAGAAGTCAGCTG TTCATCTTAT chr14:92789347-92789847 + 68 5.02e-09 ttccttcatt gtttatgatatgaagtcagctg ttattcttgt chr9:132697218-132697718 - 45 8.05e-09 CACATTCATT ATTTCCACTGAGAAGTAAGCTG TCAAGTCTTA chr8:23600198-23600698 + 62 9.67e-09 agcctccatg gttccggatgagaaatctgcag tcatctgaat chr18:50961947-50962447 + 41 1.16e-08 ggctttcatt gtttctgctgagaagtcatctc ttaatcttgt chrX:12127948-12128448 - 58 1.66e-08 AAATGCCAGG ATGTCCAGGCAGAAGTTTGCTG CATGGGCGGA chr1:100889851-100890351 - 22 1.66e-08 AAATGCCTGG ATGTCCAGGCAGAAGTTTGCTG CAGGGGTGGA chr7:159328084-159328584 - 20 1.81e-08 GGCCTCCATC TTTTGTGATGTGAAGTCAGCTG TCAATCTTAC chr8:8435567-8436067 + 39 3.05e-08 gacttccatt gttgctgtaaagaagtcagttg ccagtctaat chr15:81601262-81601762 - 51 3.05e-08 GGCATCCATT ATTGTAGTTCAGAAGTCAGCTG TCAGTCTAAT chr7:131336857-131337357 + 5 3.92e-08 catt gtttctgttgcaaaatcagccg tcagacttac chr15:56232029-56232529 - 39 3.92e-08 AAACAGCTGG ATGTCCAGACAGAAGTTTGCTG CAGAGGTGGA chr21:37348510-37349010 + 39 4.26e-08 tggcttccat agttttgttgaaaaatcagctg tcagtctaat chr8:71076046-71076546 + 43 5.03e-08 agcctatgag gcttctgctgaaaaatctgctt atagtgttgt chr10:75582029-75582529 - 53 6.96e-08 AAAAGCCTGG ATGTCCAGGCAGAAGCCTGCTG CAGGGATGGA chr12:71436236-71436736 - 41 8.16e-08 AAATGCCTGG ATGTCCAGGCAGATGTCTGCTG CAGGGGTGGA chr18:80088729-80089229 + 3 1.12e-07 ta gcttctggtgataagttggctg ttaatcttat chr14:89598506-89599006 + 8 1.41e-07 atctatt gttccagttcaaaagtcagttg tcagtcttat chr8:37427468-37427968 - 45 2.38e-07 GACTTCCATT GTCACAAGTGAGAAGTCTGTTG TTAGTCTAGT chr7:123417554-123418054 - 36 2.56e-07 AAAGGCTTGG ATGTCCAGGCAGAAGTTTACTG CAGGGATGGA chr10:132052009-13205250 + 64 2.96e-07 tggcttccat tgtccctataagaagtcagctg ttagtctaaa chr1:17155208-17155708 - 36 4.23e-07 CTGGGCCCAG TTTTTGGATGTTAAGTCTGCTG GGTCTGAGTG chr1:203094976-203095476 - 49 6.88e-07 GGCCTTCATT GTATCTGATGGGAAATCATCAG TTTTCCTATC chr17:39769938-39770438 - 33 1.03e-06 TTATGAGTGT GTTACTAAAGAAACGTGAGCTG TTGGCTTTTC chr1:66386669-66387169 - 45 1.17e-06 TGCTTCCATT ACTTCTGGCAGGCAATCTGCTG AACTTATGTT chr5:140726017-140726517 - 42 2.36e-06 CCCTGGATCC TTTTATTATGGAAAGTGAGCTG AACTTCAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCTGRTGAGAARTCWGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:15266974-15267474 6.2e-14 18_[+4]_60 chr22:32706111-32706611 6.2e-14 47_[-4]_31 chr18:79930010-79930510 1.2e-13 39_[-4]_39 chr11:76776399-76776899 3e-13 48_[+4]_30 chr1:224343544-224344044 4.9e-13 21_[+4]_57 chr10:88395614-88396114 4.9e-13 72_[-4]_6 chr10:92857870-92858370 1.1e-12 10_[+4]_68 chr22:19648354-19648854 1.6e-12 41_[-4]_37 chr12:2070386-2070886 2.7e-12 33_[+4]_45 chr14:101209534-10121003 4.3e-12 42_[+4]_36 chr14:103362742-10336324 4.3e-12 70_[+4]_8 chr10:75301955-75302455 6e-12 55_[+4]_23 chr16:58272782-58273282 8.2e-12 44_[+4]_34 chr1:228198939-228199439 1.4e-11 23_[+4]_55 chr1:225280575-225281075 1.7e-11 14_[-4]_64 chr8:36891576-36892076 1.9e-11 27_[+4]_51 chr6:125111185-125111685 3.9e-11 21_[+4]_57 chr1:154295569-154296069 2.3e-10 37_[-4]_41 chr5:125073020-125073520 4.1e-10 59_[-4]_19 chr10:94029924-94030424 5.1e-10 32_[+4]_46 chr7:149710770-149711270 5.7e-10 28_[-4]_50 chr6:166052745-166053245 5.7e-10 31_[+4]_47 chr1:197725036-197725536 8.9e-10 24_[-4]_54 chr10:129586859-12958735 1.4e-09 16_[+4]_62 chr20:745630-746130 1.5e-09 53_[-4]_25 chr2:112204349-112204849 1.7e-09 50_[-4]_28 chr10:978773-979273 2.1e-09 8_[+4]_70 chr12:105637436-10563793 2.1e-09 37_[-4]_41 chr6:107447577-107448077 2.3e-09 73_[-4]_5 chr6:160983326-160983826 2.3e-09 32_[+4]_46 chr6:136831863-136832363 2.3e-09 29_[-4]_49 chr19:31863135-31863635 2.5e-09 15_[-4]_63 chr6:56172101-56172601 2.8e-09 22_[-4]_56 chr19:19468346-19468846 3.4e-09 61_[-4]_17 chr14:92789347-92789847 5e-09 67_[+4]_11 chr9:132697218-132697718 8e-09 44_[-4]_34 chr8:23600198-23600698 9.7e-09 61_[+4]_17 chr18:50961947-50962447 1.2e-08 40_[+4]_38 chrX:12127948-12128448 1.7e-08 57_[-4]_21 chr1:100889851-100890351 1.7e-08 21_[-4]_57 chr7:159328084-159328584 1.8e-08 19_[-4]_59 chr8:8435567-8436067 3e-08 38_[+4]_40 chr15:81601262-81601762 3e-08 50_[-4]_28 chr7:131336857-131337357 3.9e-08 4_[+4]_74 chr15:56232029-56232529 3.9e-08 38_[-4]_40 chr21:37348510-37349010 4.3e-08 38_[+4]_40 chr8:71076046-71076546 5e-08 42_[+4]_36 chr10:75582029-75582529 7e-08 52_[-4]_26 chr12:71436236-71436736 8.2e-08 40_[-4]_38 chr18:80088729-80089229 1.1e-07 2_[+4]_76 chr14:89598506-89599006 1.4e-07 7_[+4]_71 chr8:37427468-37427968 2.4e-07 44_[-4]_34 chr7:123417554-123418054 2.6e-07 35_[-4]_43 chr10:132052009-13205250 3e-07 63_[+4]_15 chr1:17155208-17155708 4.2e-07 35_[-4]_43 chr1:203094976-203095476 6.9e-07 48_[-4]_30 chr17:39769938-39770438 1e-06 32_[-4]_46 chr1:66386669-66387169 1.2e-06 44_[-4]_34 chr5:140726017-140726517 2.4e-06 41_[-4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCTGRTGAGAARTCWGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTTCTGRTGAGAARTCWGCTG width=22 seqs=59 chr11:15266974-15267474 ( 19) GTTTCTGATGAGAAGTCTGCTG 1 chr22:32706111-32706611 ( 48) GTTTCTGATGAGAAGTCTGCTG 1 chr18:79930010-79930510 ( 40) GTTTCTGATGAGAAGTCAGCTG 1 chr11:76776399-76776899 ( 49) GTTTCTGATGAGAAATCTGCTG 1 chr1:224343544-224344044 ( 22) GTTTCTGATGAGAAATCAGCTG 1 chr10:88395614-88396114 ( 73) GTTTCTGATGAGAAATCAGCTG 1 chr10:92857870-92858370 ( 11) ATTTCTGATGAGAAGTCAGCTG 1 chr22:19648354-19648854 ( 42) GTTTCTGGTGAGAAATCAGCTG 1 chr12:2070386-2070886 ( 34) GTTGCTGATGAGAAGTCTGCTG 1 chr14:101209534-10121003 ( 43) GTTTCTGCTGAGAAATCTGCTG 1 chr14:103362742-10336324 ( 71) GTTTCTGCTGAGAAATCTGCTG 1 chr10:75301955-75302455 ( 56) GTTTCTGATGAGAAGTTAGCTG 1 chr16:58272782-58273282 ( 45) GTTTCTGATAAGAAATCAGCTG 1 chr1:228198939-228199439 ( 24) GTTTCCAATGAGAAATCAGCTG 1 chr1:225280575-225281075 ( 15) GTGTCTGATAAGAAGTCAGCTG 1 chr8:36891576-36892076 ( 28) GTTTCTGATGAGAAATTAGCTG 1 chr6:125111185-125111685 ( 22) GTTTCTGCTAAGAAATCTGCTG 1 chr1:154295569-154296069 ( 38) GTTTCTGAAGAGAAGTCTGCCG 1 chr5:125073020-125073520 ( 60) GTTTCTGCTGAGAAATCTACTG 1 chr10:94029924-94030424 ( 33) GTTTCTGATTAAAAGTCTGCTG 1 chr7:149710770-149711270 ( 29) GTTGCTATTGAAAAGTCTGCTG 1 chr6:166052745-166053245 ( 32) GTTTCTGATAAGAAGTCTGATG 1 chr1:197725036-197725536 ( 25) GCTGCTATTGAGAAGTCTGCTG 1 chr10:129586859-12958735 ( 17) GTTTCGGACCAGAAATCTGCTG 1 chr20:745630-746130 ( 54) GTTTCACATGAGAAATCTGCTG 1 chr2:112204349-112204849 ( 51) GTTTCTGATGAGAAGTGACCTG 1 chr10:978773-979273 ( 9) GTTACTGTTGAGCAGTCAGCTG 1 chr12:105637436-10563793 ( 38) GTTTTTGATAAGAAGTCAGCCG 1 chr6:107447577-107448077 ( 74) ATGTCCAGGCAGAAGTCTGCTG 1 chr6:160983326-160983826 ( 33) ATGTCCAGGCAGAAGTCTGCTG 1 chr6:136831863-136832363 ( 30) ATGTCCAGGCAGAAGTCTGCTG 1 chr19:31863135-31863635 ( 16) ATTTCTTTGCAGAAGTCAGCTG 1 chr6:56172101-56172601 ( 23) GGTGCTATTGAGAAATCTGCTG 1 chr19:19468346-19468846 ( 62) GTCTCGAGTCAGAAGTCAGCTG 1 chr14:92789347-92789847 ( 68) GTTTATGATATGAAGTCAGCTG 1 chr9:132697218-132697718 ( 45) ATTTCCACTGAGAAGTAAGCTG 1 chr8:23600198-23600698 ( 62) GTTCCGGATGAGAAATCTGCAG 1 chr18:50961947-50962447 ( 41) GTTTCTGCTGAGAAGTCATCTC 1 chrX:12127948-12128448 ( 58) ATGTCCAGGCAGAAGTTTGCTG 1 chr1:100889851-100890351 ( 22) ATGTCCAGGCAGAAGTTTGCTG 1 chr7:159328084-159328584 ( 20) TTTTGTGATGTGAAGTCAGCTG 1 chr8:8435567-8436067 ( 39) GTTGCTGTAAAGAAGTCAGTTG 1 chr15:81601262-81601762 ( 51) ATTGTAGTTCAGAAGTCAGCTG 1 chr7:131336857-131337357 ( 5) GTTTCTGTTGCAAAATCAGCCG 1 chr15:56232029-56232529 ( 39) ATGTCCAGACAGAAGTTTGCTG 1 chr21:37348510-37349010 ( 39) AGTTTTGTTGAAAAATCAGCTG 1 chr8:71076046-71076546 ( 43) GCTTCTGCTGAAAAATCTGCTT 1 chr10:75582029-75582529 ( 53) ATGTCCAGGCAGAAGCCTGCTG 1 chr12:71436236-71436736 ( 41) ATGTCCAGGCAGATGTCTGCTG 1 chr18:80088729-80089229 ( 3) GCTTCTGGTGATAAGTTGGCTG 1 chr14:89598506-89599006 ( 8) GTTCCAGTTCAAAAGTCAGTTG 1 chr8:37427468-37427968 ( 45) GTCACAAGTGAGAAGTCTGTTG 1 chr7:123417554-123418054 ( 36) ATGTCCAGGCAGAAGTTTACTG 1 chr10:132052009-13205250 ( 64) TGTCCCTATAAGAAGTCAGCTG 1 chr1:17155208-17155708 ( 36) TTTTTGGATGTTAAGTCTGCTG 1 chr1:203094976-203095476 ( 49) GTATCTGATGGGAAATCATCAG 1 chr17:39769938-39770438 ( 33) GTTACTAAAGAAACGTGAGCTG 1 chr1:66386669-66387169 ( 45) ACTTCTGGCAGGCAATCTGCTG 1 chr5:140726017-140726517 ( 42) TTTTATTATGGAAAGTGAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCTGRTGAGAARTCWGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 10.3041 E= 4.4e-184 -12 -1253 159 -202 -1253 -173 -214 168 -402 -273 -41 150 -244 -214 -114 153 -302 197 -372 -202 -202 -14 -173 126 6 -372 152 -244 78 -92 8 -70 -202 -273 -56 144 -85 8 140 -402 168 -372 -214 -244 -102 -1253 189 -302 181 -273 -1253 -1253 181 -372 -1253 -402 30 -1253 156 -1253 -1253 -372 -1253 184 -402 186 -214 -122 78 -1253 -372 88 -302 -372 203 -302 -402 205 -1253 -244 -302 -214 -1253 173 -1253 -372 211 -402 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCTGRTGAGAARTCWGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 59 E= 4.4e-184 0.254237 0.000000 0.677966 0.067797 0.000000 0.067797 0.050847 0.881356 0.016949 0.033898 0.169492 0.779661 0.050847 0.050847 0.101695 0.796610 0.033898 0.881356 0.016949 0.067797 0.067797 0.203390 0.067797 0.661017 0.288136 0.016949 0.644068 0.050847 0.474576 0.118644 0.237288 0.169492 0.067797 0.033898 0.152542 0.745763 0.152542 0.237288 0.593220 0.016949 0.881356 0.016949 0.050847 0.050847 0.135593 0.000000 0.830508 0.033898 0.966102 0.033898 0.000000 0.000000 0.966102 0.016949 0.000000 0.016949 0.338983 0.000000 0.661017 0.000000 0.000000 0.016949 0.000000 0.983051 0.016949 0.813559 0.050847 0.118644 0.474576 0.000000 0.016949 0.508475 0.033898 0.016949 0.915254 0.033898 0.016949 0.932203 0.000000 0.050847 0.033898 0.050847 0.000000 0.915254 0.000000 0.016949 0.966102 0.016949 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCTGRTGAGAARTCWGCTG MEME-4 regular expression -------------------------------------------------------------------------------- [GA]TTTC[TC][GA][AG]T[GC]AGAA[GA]TC[TA]GCTG -------------------------------------------------------------------------------- Time 1706.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GYVCAGCATGACTCAGCAGGTTTGGAGYGCAGGY MEME-5 width = 34 sites = 19 llr = 717 E-value = 5.0e-163 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYVCAGCATGACTCAGCAGGTTTGGAGYGCAGGY MEME-5 Description -------------------------------------------------------------------------------- Simplified A 313:7::9:1a:1:a1:72:2::::9:11:a1:: pos.-specific C :4491:8::::a:a::8::::::::::3:a:::5 probability G 713::911:9:::::9:38a:::a91a:9::8a: matrix T :5:1211:a:::9:::2:::8aa:1::6:::1:5 bits 2.2 * * * * * * * 1.9 * * **** *** * **** * *** * 1.7 * * **** *** * **** * *** * 1.5 * * ***** **** ** ****** *** * Relative 1.3 * * ************ ** ****** ***** Entropy 1.1 * * ********************** ****** (54.4 bits) 0.9 * ******************************* 0.6 * ******************************* 0.4 ********************************** 0.2 ********************************** 0.0 ---------------------------------- Multilevel GTCCAGCATGACTCAGCAGGTTTGGAGTGCAGGC consensus ACA T G A C T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYVCAGCATGACTCAGCAGGTTTGGAGYGCAGGY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------------- chr2:148253654-148254154 - 45 2.41e-20 TAGACTTCCA GCGCAGCATGACTCAGCAGGTTTGGAGTGCAGGT GCACAACCCC chr6:83867507-83868007 + 29 8.81e-20 tggcctgtat gcacagcatgactcagcgggtttggagcgcaggc acataacctc chr4:24965569-24966069 + 53 1.07e-19 cggccttctg acacagcatgactcagcaggtttggagtgcaggc gcaaaacccc chr5:59713056-59713556 + 33 2.22e-19 cagacatcag gtccagcatgactcagcaagtttggagtgcaggt gcacaattct chr6:90197805-90198305 + 21 2.98e-19 cagacatcta gtccagcatgactcagcgagtttggagtgcaggc acacagctct chr18:47184566-47185066 + 33 5.60e-19 tggccttctg gtgcagcatgactcagcaggtttggagagcaggc gcacaactgc chr4:83378370-83378870 + 32 6.94e-19 cagacatgca ggccagcatgactcagcaagtttggagtgcaggc gcacaactcc chr4:83965076-83965576 - 56 8.62e-19 CAAACATCCA GTCCAGCATGACTCAGCAGGTTTGGAGTGCATGT GCACAACTCC chr10:70651589-70652089 + 17 1.14e-18 tggccttctg gcacagcatgactcagtgggtttggagcgcaggc gcataactat chr4:41294389-41294889 + 23 1.68e-18 aagccttctg gtgcagcataactcagcaggtttggagtgcaggt gcacaactcc chr4:119690811-119691311 + 39 2.06e-18 agaggtaaac atcctgcatgactcagcaggattggagtgcaggt gcacattccc chr7:33539146-33539646 - 41 2.49e-18 TACACACCCG GCACAGCATGACACAGCAGGATTGGAGTGCAGGT GCACAATCCT chr11:27291259-27291759 - 52 3.31e-18 GGCTGAGGTG GCATAGCATGACTCAGCGGGTTTGGAGTGCAGGT GCACAACTCT chr5:68932788-68933288 - 41 1.86e-17 CAGCTTTCCA GCACAGTGTGACTCAGCAGGTTTGGAGCGCAGGT GCACAACTCC chr2:86661273-86661773 - 58 4.28e-17 GAGGCAAAC ATCCTGCATGACTCAGCAGGATTGGAGCACAGGC GCACAATTTC chr10:70648418-70648918 + 27 9.19e-17 tggccttcca gtgcagcatgactcaatgggtttggagtgcaagc gcacaactcc chr4:107780601-107781101 - 56 1.19e-16 TGAGGTAAAC ATCCTGTATGACACAGCAGGATTGGAGCGCAGGC GCACAGTCCC chr5:5409115-5409615 + 33 1.19e-15 tgaggtaaac agcctggatgactcagcaggtttgtggtgcaggc gcacagtccc chr6:99026111-99026611 - 54 2.77e-15 CGGCCTTCTG GAGCCTCATGACTCAGTGGGTTTGGAGCGCAAGT GCACAAACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYVCAGCATGACTCAGCAGGTTTGGAGYGCAGGY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:148253654-148254154 2.4e-20 44_[-5]_22 chr6:83867507-83868007 8.8e-20 28_[+5]_38 chr4:24965569-24966069 1.1e-19 52_[+5]_14 chr5:59713056-59713556 2.2e-19 32_[+5]_34 chr6:90197805-90198305 3e-19 20_[+5]_46 chr18:47184566-47185066 5.6e-19 32_[+5]_34 chr4:83378370-83378870 6.9e-19 31_[+5]_35 chr4:83965076-83965576 8.6e-19 55_[-5]_11 chr10:70651589-70652089 1.1e-18 16_[+5]_50 chr4:41294389-41294889 1.7e-18 22_[+5]_44 chr4:119690811-119691311 2.1e-18 38_[+5]_28 chr7:33539146-33539646 2.5e-18 40_[-5]_26 chr11:27291259-27291759 3.3e-18 51_[-5]_15 chr5:68932788-68933288 1.9e-17 40_[-5]_26 chr2:86661273-86661773 4.3e-17 57_[-5]_9 chr10:70648418-70648918 9.2e-17 26_[+5]_40 chr4:107780601-107781101 1.2e-16 55_[-5]_11 chr5:5409115-5409615 1.2e-15 32_[+5]_34 chr6:99026111-99026611 2.8e-15 53_[-5]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYVCAGCATGACTCAGCAGGTTTGGAGYGCAGGY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYVCAGCATGACTCAGCAGGTTTGGAGYGCAGGY width=34 seqs=19 chr2:148253654-148254154 ( 45) GCGCAGCATGACTCAGCAGGTTTGGAGTGCAGGT 1 chr6:83867507-83868007 ( 29) GCACAGCATGACTCAGCGGGTTTGGAGCGCAGGC 1 chr4:24965569-24966069 ( 53) ACACAGCATGACTCAGCAGGTTTGGAGTGCAGGC 1 chr5:59713056-59713556 ( 33) GTCCAGCATGACTCAGCAAGTTTGGAGTGCAGGT 1 chr6:90197805-90198305 ( 21) GTCCAGCATGACTCAGCGAGTTTGGAGTGCAGGC 1 chr18:47184566-47185066 ( 33) GTGCAGCATGACTCAGCAGGTTTGGAGAGCAGGC 1 chr4:83378370-83378870 ( 32) GGCCAGCATGACTCAGCAAGTTTGGAGTGCAGGC 1 chr4:83965076-83965576 ( 56) GTCCAGCATGACTCAGCAGGTTTGGAGTGCATGT 1 chr10:70651589-70652089 ( 17) GCACAGCATGACTCAGTGGGTTTGGAGCGCAGGC 1 chr4:41294389-41294889 ( 23) GTGCAGCATAACTCAGCAGGTTTGGAGTGCAGGT 1 chr4:119690811-119691311 ( 39) ATCCTGCATGACTCAGCAGGATTGGAGTGCAGGT 1 chr7:33539146-33539646 ( 41) GCACAGCATGACACAGCAGGATTGGAGTGCAGGT 1 chr11:27291259-27291759 ( 52) GCATAGCATGACTCAGCGGGTTTGGAGTGCAGGT 1 chr5:68932788-68933288 ( 41) GCACAGTGTGACTCAGCAGGTTTGGAGCGCAGGT 1 chr2:86661273-86661773 ( 58) ATCCTGCATGACTCAGCAGGATTGGAGCACAGGC 1 chr10:70648418-70648918 ( 27) GTGCAGCATGACTCAATGGGTTTGGAGTGCAAGC 1 chr4:107780601-107781101 ( 56) ATCCTGTATGACACAGCAGGATTGGAGCGCAGGC 1 chr5:5409115-5409615 ( 33) AGCCTGGATGACTCAGCAGGTTTGTGGTGCAGGC 1 chr6:99026111-99026611 ( 54) GAGCCTCATGACTCAGTGGGTTTGGAGCGCAAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYVCAGCATGACTCAGCAGGTTTGGAGYGCAGGY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 34 n= 40133 bayes= 7.58039 E= 5.0e-163 -7 -1089 171 -1089 -238 71 -109 78 20 91 23 -1089 -1089 208 -1089 -238 142 -209 -1089 -39 -1089 -1089 208 -238 -1089 191 -209 -139 178 -1089 -209 -1089 -1089 -1089 -1089 186 -238 -1089 208 -1089 186 -1089 -1089 -1089 -1089 215 -1089 -1089 -139 -1089 -1089 170 -1089 215 -1089 -1089 186 -1089 -1089 -1089 -238 -1089 208 -1089 -1089 191 -1089 -80 131 -1089 49 -1089 -80 -1089 191 -1089 -1089 -1089 215 -1089 -39 -1089 -1089 152 -1089 -1089 -1089 186 -1089 -1089 -1089 186 -1089 -1089 215 -1089 -1089 -1089 208 -238 178 -1089 -209 -1089 -1089 -1089 215 -1089 -238 49 -1089 120 -238 -1089 208 -1089 -1089 215 -1089 -1089 186 -1089 -1089 -1089 -139 -1089 191 -238 -1089 -1089 215 -1089 -1089 123 -1089 78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYVCAGCATGACTCAGCAGGTTTGGAGYGCAGGY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 34 nsites= 19 E= 5.0e-163 0.263158 0.000000 0.736842 0.000000 0.052632 0.368421 0.105263 0.473684 0.315789 0.421053 0.263158 0.000000 0.000000 0.947368 0.000000 0.052632 0.736842 0.052632 0.000000 0.210526 0.000000 0.000000 0.947368 0.052632 0.000000 0.842105 0.052632 0.105263 0.947368 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 1.000000 0.052632 0.000000 0.947368 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.894737 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.947368 0.000000 0.000000 0.842105 0.000000 0.157895 0.684211 0.000000 0.315789 0.000000 0.157895 0.000000 0.842105 0.000000 0.000000 0.000000 1.000000 0.000000 0.210526 0.000000 0.000000 0.789474 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.947368 0.052632 0.947368 0.000000 0.052632 0.000000 0.000000 0.000000 1.000000 0.000000 0.052632 0.315789 0.000000 0.631579 0.052632 0.000000 0.947368 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.842105 0.052632 0.000000 0.000000 1.000000 0.000000 0.000000 0.526316 0.000000 0.473684 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYVCAGCATGACTCAGCAGGTTTGGAGYGCAGGY MEME-5 regular expression -------------------------------------------------------------------------------- [GA][TC][CAG]C[AT]GCATGACTCAGC[AG]GG[TA]TTGGAG[TC]GCAGG[CT] -------------------------------------------------------------------------------- Time 2103.34 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCTTATCTWCAACY MEME-6 width = 16 sites = 35 llr = 685 E-value = 1.8e-126 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCTTATCTWCAACY MEME-6 Description -------------------------------------------------------------------------------- Simplified A ::::::a:::4:aa:: pos.-specific C :aaa::::a::a::a3 probability G :::::::::::::::: matrix T a:::aa:a:a5::::6 bits 2.2 * 1.9 ******* ** **** 1.7 ********** **** 1.5 ********** **** Relative 1.3 ********** **** Entropy 1.1 ********** **** (28.2 bits) 0.9 ********** ***** 0.6 **************** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel TCCCTTATCTTCAACT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTTATCTWCAACY MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr5:134284395-134284895 + 44 3.24e-10 gcgtatttca tcccttatcttcaact gcacaagaca chr5:134262627-134263127 + 26 3.24e-10 gtgtacttcc tcccttatcttcaact gcataagaca chr12:56882349-56882849 + 32 3.24e-10 gcatatttca tcccttatcttcaact gcataagacg chr1:85714471-85714971 + 45 3.24e-10 gcgtatttta tcccttatcttcaact gcataagacg chr2:46642819-46643319 + 27 3.24e-10 gtgtatttca tcccttatcttcaact gcataagaca chr6:132109751-132110251 + 2 3.24e-10 c tcccttatcttcaact gcataagaca chr13:52309839-52310339 + 38 3.24e-10 gcgtatttca tcccttatcttcaact gcgtaagaca chr13:52502222-52502722 - 45 3.24e-10 GAGTATTTCA TCCCTTATCTTCAACT GCGTAAGACA chr2:39790361-39790861 + 36 3.24e-10 gtgtatttca tcccttatcttcaact gcataagaca chr10:89620156-89620656 - 76 3.24e-10 TGTATTTCA TCCCTTATCTTCAACT GCATAAGGCA chr11:94219729-94220229 + 63 3.24e-10 gcatatttca tcccttatcttcaact gcataagaca chr17:27695198-27695698 + 49 6.48e-10 gcatatttca tcccttatctacaact gcataagaca chr1:84287378-84287878 - 21 6.48e-10 GCTTATTTCA TCCCTTATCTACAACT GTATAAGACA chr12:52761121-52761621 + 52 6.48e-10 gcttatttca tcccttatctacaact gtataagaca chr4:128265521-128266021 + 27 6.48e-10 gcatatttca tcccttatctacaact gcataagaca chr20:56520914-56521414 + 39 6.48e-10 gcgtatttca tcccttatctacaact gcataagaca chr17:27686292-27686792 + 78 6.48e-10 gcgtatttag tcccttatctacaact gcataag chr1:93833276-93833776 + 34 6.48e-10 gtgtatttca tcccttatctacaact gcataagaca chr11:128998967-12899946 - 77 6.48e-10 GTATTTCA TCCCTTATCTACAACT GCATAAGACA chr13:66760618-66761118 - 37 6.48e-10 GCATATTTCA TCCCTTATCTACAACT GCATAAGATA chr6:33101076-33101576 + 65 9.11e-10 gcatatttca tcccttatcttcaacc atgtaattca chr11:27135765-27136265 - 23 9.11e-10 GCGTATTTCA TCCCTTATCTTCAACC ACATAAGACA chr17:80155457-80155957 - 41 9.11e-10 GTGTATTTCA TCCCTTATCTTCAACC ACATAAAACA chr6:52200061-52200561 + 12 9.11e-10 gcgtatttca tcccttatcttcaacc tcataagaca chr3:72075814-72076314 + 33 9.11e-10 gcgtatttca tcccttatcttcaacc gcataagaca chr10:95732873-95733373 + 23 9.11e-10 gcttatttca tcccttatcttcaacc ataaaagaca chr12:105313695-10531419 - 60 9.11e-10 GCTTATTTCA TCCCTTATCTTCAACC GTATAAGACA chr8:106077131-106077631 - 43 1.17e-09 GCTCATTTCA TCCCTTATCTACAACC ATTAAAGACA chr1:203234864-203235364 - 41 2.56e-09 GCTTATTTCA TCCCTTATCTACAACA GTAAAAGACA chr5:92795579-92796079 + 45 5.03e-09 gcttatttca tcccttagcttcaacc acgtaagaca chr6:112328836-112329336 + 4 7.24e-09 tca ttccttatctacaact gcataaagca chr12:75457911-75458411 + 36 7.24e-09 gtgtatttca tcctttatctacaact gtataagaca chr12:56653753-56654253 - 27 1.05e-08 GCTTATTTCA TCCCTTATCTATAACC ATATAAGACA chr10:73258569-73259069 - 9 1.05e-08 GCTTTTTTCA TCCCTTATATACAACC ATATAAGA chr8:93908072-93908572 + 33 1.66e-08 gcttatttca tcccttatctgcaatc gtaaagacag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTTATCTWCAACY MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:134284395-134284895 3.2e-10 43_[+6]_41 chr5:134262627-134263127 3.2e-10 25_[+6]_59 chr12:56882349-56882849 3.2e-10 31_[+6]_53 chr1:85714471-85714971 3.2e-10 44_[+6]_40 chr2:46642819-46643319 3.2e-10 26_[+6]_58 chr6:132109751-132110251 3.2e-10 1_[+6]_83 chr13:52309839-52310339 3.2e-10 37_[+6]_47 chr13:52502222-52502722 3.2e-10 44_[-6]_40 chr2:39790361-39790861 3.2e-10 35_[+6]_49 chr10:89620156-89620656 3.2e-10 75_[-6]_9 chr11:94219729-94220229 3.2e-10 62_[+6]_22 chr17:27695198-27695698 6.5e-10 48_[+6]_36 chr1:84287378-84287878 6.5e-10 20_[-6]_64 chr12:52761121-52761621 6.5e-10 51_[+6]_33 chr4:128265521-128266021 6.5e-10 26_[+6]_58 chr20:56520914-56521414 6.5e-10 38_[+6]_46 chr17:27686292-27686792 6.5e-10 77_[+6]_7 chr1:93833276-93833776 6.5e-10 33_[+6]_51 chr11:128998967-12899946 6.5e-10 76_[-6]_8 chr13:66760618-66761118 6.5e-10 36_[-6]_48 chr6:33101076-33101576 9.1e-10 64_[+6]_20 chr11:27135765-27136265 9.1e-10 22_[-6]_62 chr17:80155457-80155957 9.1e-10 40_[-6]_44 chr6:52200061-52200561 9.1e-10 11_[+6]_73 chr3:72075814-72076314 9.1e-10 32_[+6]_52 chr10:95732873-95733373 9.1e-10 22_[+6]_62 chr12:105313695-10531419 9.1e-10 59_[-6]_25 chr8:106077131-106077631 1.2e-09 42_[-6]_42 chr1:203234864-203235364 2.6e-09 40_[-6]_44 chr5:92795579-92796079 5e-09 44_[+6]_40 chr6:112328836-112329336 7.2e-09 3_[+6]_81 chr12:75457911-75458411 7.2e-09 35_[+6]_49 chr12:56653753-56654253 1e-08 26_[-6]_58 chr10:73258569-73259069 1e-08 8_[-6]_76 chr8:93908072-93908572 1.7e-08 32_[+6]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTTATCTWCAACY MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCTTATCTWCAACY width=16 seqs=35 chr5:134284395-134284895 ( 44) TCCCTTATCTTCAACT 1 chr5:134262627-134263127 ( 26) TCCCTTATCTTCAACT 1 chr12:56882349-56882849 ( 32) TCCCTTATCTTCAACT 1 chr1:85714471-85714971 ( 45) TCCCTTATCTTCAACT 1 chr2:46642819-46643319 ( 27) TCCCTTATCTTCAACT 1 chr6:132109751-132110251 ( 2) TCCCTTATCTTCAACT 1 chr13:52309839-52310339 ( 38) TCCCTTATCTTCAACT 1 chr13:52502222-52502722 ( 45) TCCCTTATCTTCAACT 1 chr2:39790361-39790861 ( 36) TCCCTTATCTTCAACT 1 chr10:89620156-89620656 ( 76) TCCCTTATCTTCAACT 1 chr11:94219729-94220229 ( 63) TCCCTTATCTTCAACT 1 chr17:27695198-27695698 ( 49) TCCCTTATCTACAACT 1 chr1:84287378-84287878 ( 21) TCCCTTATCTACAACT 1 chr12:52761121-52761621 ( 52) TCCCTTATCTACAACT 1 chr4:128265521-128266021 ( 27) TCCCTTATCTACAACT 1 chr20:56520914-56521414 ( 39) TCCCTTATCTACAACT 1 chr17:27686292-27686792 ( 78) TCCCTTATCTACAACT 1 chr1:93833276-93833776 ( 34) TCCCTTATCTACAACT 1 chr11:128998967-12899946 ( 77) TCCCTTATCTACAACT 1 chr13:66760618-66761118 ( 37) TCCCTTATCTACAACT 1 chr6:33101076-33101576 ( 65) TCCCTTATCTTCAACC 1 chr11:27135765-27136265 ( 23) TCCCTTATCTTCAACC 1 chr17:80155457-80155957 ( 41) TCCCTTATCTTCAACC 1 chr6:52200061-52200561 ( 12) TCCCTTATCTTCAACC 1 chr3:72075814-72076314 ( 33) TCCCTTATCTTCAACC 1 chr10:95732873-95733373 ( 23) TCCCTTATCTTCAACC 1 chr12:105313695-10531419 ( 60) TCCCTTATCTTCAACC 1 chr8:106077131-106077631 ( 43) TCCCTTATCTACAACC 1 chr1:203234864-203235364 ( 41) TCCCTTATCTACAACA 1 chr5:92795579-92796079 ( 45) TCCCTTAGCTTCAACC 1 chr6:112328836-112329336 ( 4) TTCCTTATCTACAACT 1 chr12:75457911-75458411 ( 36) TCCTTTATCTACAACT 1 chr12:56653753-56654253 ( 27) TCCCTTATCTATAACC 1 chr10:73258569-73259069 ( 9) TCCCTTATATACAACC 1 chr8:93908072-93908572 ( 33) TCCCTTATCTGCAATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTTATCTWCAACY MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50915 bayes= 6.92143 E= 1.8e-126 -1177 -1177 -1177 186 -1177 211 -1177 -327 -1177 215 -1177 -1177 -1177 211 -1177 -327 -1177 -1177 -1177 186 -1177 -1177 -1177 186 186 -1177 -1177 -1177 -1177 -1177 -297 182 -327 211 -1177 -1177 -1177 -1177 -1177 186 64 -1177 -297 98 -1177 211 -1177 -327 186 -1177 -1177 -1177 186 -1177 -1177 -1177 -1177 211 -1177 -327 -327 61 -1177 119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTTATCTWCAACY MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 35 E= 1.8e-126 0.000000 0.000000 0.000000 1.000000 0.000000 0.971429 0.000000 0.028571 0.000000 1.000000 0.000000 0.000000 0.000000 0.971429 0.000000 0.028571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.971429 0.028571 0.971429 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.428571 0.000000 0.028571 0.542857 0.000000 0.971429 0.000000 0.028571 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.971429 0.000000 0.028571 0.028571 0.342857 0.000000 0.628571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTTATCTWCAACY MEME-6 regular expression -------------------------------------------------------------------------------- TCCCTTATCT[TA]CAAC[TC] -------------------------------------------------------------------------------- Time 2496.81 secs. ******************************************************************************** ******************************************************************************** MOTIF MWWGBAAGCCWGARGRCAVTGS MEME-7 width = 22 sites = 52 llr = 830 E-value = 5.5e-113 ******************************************************************************** -------------------------------------------------------------------------------- Motif MWWGBAAGCCWGARGRCAVTGS MEME-7 Description -------------------------------------------------------------------------------- Simplified A 3542197:115:7624183:2: pos.-specific C 5:::3:::99:::1::7:4::4 probability G 1::84:28::1a2376:22:86 matrix T 156:2::1::4:::::2::a:: bits 2.2 1.9 * * 1.7 * * * 1.5 * ** * * Relative 1.3 * * *** * * Entropy 1.1 * * *** * ** * ** (23.0 bits) 0.9 * ***** ******* *** 0.6 *** ************* *** 0.4 **** ***************** 0.2 ********************** 0.0 ---------------------- Multilevel CATGGAAGCCAGAAGGCACTGG consensus ATA C G T GGAA GA C sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWWGBAAGCCWGARGRCAVTGS MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:33101076-33101576 + 22 1.78e-11 tttcctaatc ctagcaagcctgagggcactgc aggagaccag chr5:134284395-134284895 + 1 1.78e-11 . ctagcaagcctgagggcactgc aggagaccag chr17:27686292-27686792 + 35 1.78e-11 tttcccaatc ctagcaagcctgagggcactgc aggagaccag chr8:36891576-36892076 - 6 2.17e-11 CATCAGAAAC CATGAAAGCCAGAAGGCAGTGG AAGAA chr4:87243400-87243900 + 2 3.25e-11 c catggaagccagaaagcagtgg gatgacattc chr14:93519965-93520465 - 61 3.91e-11 CGTCAGAAAC AATGCAAGCCAGAAGACAATGG AACGACATCT chr1:197725036-197725536 + 47 4.73e-11 caatagcagc aatggaagccagaagacagtgg aataatatac chr10:130117518-13011801 + 9 4.73e-11 tcccaatc ctagtaagcctgagggcactgc aggagaccag chr18:50961947-50962447 - 19 9.44e-11 CAGCAGAAAC AATGAAAGCCAGAAGGCAGTGG GATAACATAT chr16:58272782-58273282 - 23 2.40e-10 TATCAGAAAC AATGAAGGCCAGAAGGCAATGG GCTGAAAAGA chr17:80155457-80155957 - 78 2.78e-10 C CTAGCAAGCCTGAGGGCACTAC AGGAGACCAA chr2:112204349-112204849 + 73 2.78e-10 catcagaaac tatggaagccagaagacagtgg gaggac chr5:92795579-92796079 + 2 3.21e-10 c ctagtaagcctgaaggtactgc aggagaccag chr11:76776399-76776899 - 27 4.25e-10 CATCAGAAAC TTTGGAGGCCAGAAGGCAGTGG GATGATAAAG chr7:42554897-42555397 - 64 4.88e-10 TTTCCTAATC CTAGCAAGCCTGGGGGCGCTGC AGGAGACTAG chr6:30869211-30869711 - 43 4.88e-10 TTTCCCAATC CTAGTAAGCCTGAGGGTACTGC AGGAGACCAG chr1:84287378-84287878 - 58 6.39e-10 TTTCCTAATC CTAATAAGCCTGAGGGCACTGC AGGAGACCGG chr7:159328084-159328584 + 42 6.39e-10 catcacaaaa gatggaggccagaagacaatgg gatagcatat chr1:203094976-203095476 + 71 7.30e-10 catcagatac aatgaaggccagaagacaatgg agcaacat chr11:94219729-94220229 + 20 1.08e-09 tttcctaatc ctagcaagcctgagggtgctgc aggagaccag chr6:166052745-166053245 - 10 1.56e-09 TATCAGAAAC TATGCAAGCCAGAAAACAATGG AATTGTGAA chr1:66386669-66387169 + 67 1.99e-09 tgccagaagt aatggaagcaagaagacaatgg aacatcatct chr1:2646736-2647236 - 47 2.25e-09 TCCCAGAAAC AATGGAACCCAGAAGACAATGG GACAGCACCT chr18:79930010-79930510 + 62 2.84e-09 catcagaaac aatggagtccagagggcagtgg aataacatat chr8:8435567-8436067 - 17 4.49e-09 TTACAGCAAC AATGGAAGTCAGAAGACAGTGG AACAATACTT chr22:32706111-32706611 + 70 5.01e-09 catcagaaac tatgcaggccagaagataatgg gatggcgta chr8:23600198-23600698 - 40 7.74e-09 CATCCGGAAC CATGGAGGCTAGAAGACAATGG AACAGGATCT chr1:154295569-154296069 + 60 8.60e-09 cttcagaaac aatggagaccaggaggcaatgg aatgagatat chr1:85714471-85714971 + 2 1.94e-08 c ctagcaagcctaagggcgctgc aggagaccag chr17:27695198-27695698 + 6 2.85e-08 caatc ctagcaagcctgcaggcattgc aggagactag chr7:149710770-149711270 + 51 2.85e-08 caatagcaac aatgaaagtcaggagacaatgg aataaaatat chr6:130644705-130645205 + 10 3.44e-08 ttccttatc ctaataagcctggaagcactac gggagaccag chr8:510294-510794 + 56 3.44e-08 cagtaaaaac aatgaatgccggaaggcagtgg aataacacaa chr10:73258569-73259069 - 46 3.44e-08 TTTCCTAATC CTAATAAGCCTGGGGGCGCTAC AGGAAACCGG chr12:2070386-2070886 - 12 3.77e-08 CATCAGCAAC AATAGAATCCAGAAGATAATGG AATATCTTTA chr5:151931218-151931718 - 6 4.13e-08 TCAAAGATAC AATGTCAGCCAGAAAACAATGG AATAA chr10:92662763-92663263 - 63 4.13e-08 TATCAGTAAC CATGGAGGCCAGAAAGCCATAG GATGACATTC chr13:66760618-66761118 - 74 4.13e-08 CAATC CTAGCAAGCCTGGGGGTGCTGA AGGAGACCAG chr10:94029924-94030424 - 11 8.41e-08 AATCAGAAAC AATGCAATCCAGAAGAGAGTGG ACAAATCTTT chr12:105637436-10563793 + 60 8.41e-08 tatcaaaaac cacgagagccagaagacaatgg aataacattt chr22:19648354-19648854 + 64 1.18e-07 caccagaaac tatggaggccagaaggaagtga catattcaaa chr1:228198939-228199439 - 2 1.18e-07 CATTGGAAAC AATGGATACCAGGAGACAATGG G chr12:56653753-56654253 - 64 1.28e-07 TTTCCTAATC CTAATAAGCCTGGGGGTGCTAC AGGAGACCAG chr19:31863135-31863635 + 38 2.09e-07 gcaaagaaat gatggaagccaggaaaaaatag aaGGCTAtga chr12:52761121-52761621 + 9 2.44e-07 tcctcgtc ctaataggcctgggagcgctac aggagaccag chr11:110421590-11042209 + 11 2.64e-07 tttccttgtc ctaacaagcctgggagtgctac gggagactgg chr1:203234864-203235364 - 78 3.86e-07 C CTAATAAGCCTGGGAGTGCTAC GGGAGACTGG chr7:112572638-112573138 + 36 4.82e-07 AATATTGTGA GTTGGAAGCCTGACAATATTGG CAACATGCCA chr11:27135765-27136265 - 60 7.41e-07 TTTCCCAATC CTGGTAAGCCTGAGTGCACTTC AGGAGACGAG chr1:89995025-89995525 + 38 1.32e-05 CTGCCATGGA CTTCGAGGACGGTAAGCGCTGC CTCTGGCTGG chr6:88031488-88031988 - 7 8.86e-05 AAAAACTGGG CCTAGAACAAAGACAGCACTTG ACTTTT chr5:180828680-180829180 + 77 9.22e-04 gtcctatgcg gtagcgataaggactgagatac gt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWWGBAAGCCWGARGRCAVTGS MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:33101076-33101576 1.8e-11 21_[+7]_57 chr5:134284395-134284895 1.8e-11 [+7]_78 chr17:27686292-27686792 1.8e-11 34_[+7]_44 chr8:36891576-36892076 2.2e-11 5_[-7]_73 chr4:87243400-87243900 3.2e-11 1_[+7]_77 chr14:93519965-93520465 3.9e-11 60_[-7]_18 chr1:197725036-197725536 4.7e-11 46_[+7]_32 chr10:130117518-13011801 4.7e-11 8_[+7]_70 chr18:50961947-50962447 9.4e-11 18_[-7]_60 chr16:58272782-58273282 2.4e-10 22_[-7]_56 chr17:80155457-80155957 2.8e-10 77_[-7]_1 chr2:112204349-112204849 2.8e-10 72_[+7]_6 chr5:92795579-92796079 3.2e-10 1_[+7]_77 chr11:76776399-76776899 4.2e-10 26_[-7]_52 chr7:42554897-42555397 4.9e-10 63_[-7]_15 chr6:30869211-30869711 4.9e-10 42_[-7]_36 chr1:84287378-84287878 6.4e-10 57_[-7]_21 chr7:159328084-159328584 6.4e-10 41_[+7]_37 chr1:203094976-203095476 7.3e-10 70_[+7]_8 chr11:94219729-94220229 1.1e-09 19_[+7]_59 chr6:166052745-166053245 1.6e-09 9_[-7]_69 chr1:66386669-66387169 2e-09 66_[+7]_12 chr1:2646736-2647236 2.2e-09 46_[-7]_32 chr18:79930010-79930510 2.8e-09 61_[+7]_17 chr8:8435567-8436067 4.5e-09 16_[-7]_62 chr22:32706111-32706611 5e-09 69_[+7]_9 chr8:23600198-23600698 7.7e-09 39_[-7]_39 chr1:154295569-154296069 8.6e-09 59_[+7]_19 chr1:85714471-85714971 1.9e-08 1_[+7]_77 chr17:27695198-27695698 2.8e-08 5_[+7]_73 chr7:149710770-149711270 2.8e-08 50_[+7]_28 chr6:130644705-130645205 3.4e-08 9_[+7]_69 chr8:510294-510794 3.4e-08 55_[+7]_23 chr10:73258569-73259069 3.4e-08 45_[-7]_33 chr12:2070386-2070886 3.8e-08 11_[-7]_67 chr5:151931218-151931718 4.1e-08 5_[-7]_73 chr10:92662763-92663263 4.1e-08 62_[-7]_16 chr13:66760618-66761118 4.1e-08 73_[-7]_5 chr10:94029924-94030424 8.4e-08 10_[-7]_68 chr12:105637436-10563793 8.4e-08 59_[+7]_19 chr22:19648354-19648854 1.2e-07 63_[+7]_15 chr1:228198939-228199439 1.2e-07 1_[-7]_77 chr12:56653753-56654253 1.3e-07 63_[-7]_15 chr19:31863135-31863635 2.1e-07 37_[+7]_41 chr12:52761121-52761621 2.4e-07 8_[+7]_70 chr11:110421590-11042209 2.6e-07 10_[+7]_68 chr1:203234864-203235364 3.9e-07 77_[-7]_1 chr7:112572638-112573138 4.8e-07 35_[+7]_43 chr11:27135765-27136265 7.4e-07 59_[-7]_19 chr1:89995025-89995525 1.3e-05 37_[+7]_41 chr6:88031488-88031988 8.9e-05 6_[-7]_72 chr5:180828680-180829180 0.00092 76_[+7]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWWGBAAGCCWGARGRCAVTGS MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MWWGBAAGCCWGARGRCAVTGS width=22 seqs=52 chr6:33101076-33101576 ( 22) CTAGCAAGCCTGAGGGCACTGC 1 chr5:134284395-134284895 ( 1) CTAGCAAGCCTGAGGGCACTGC 1 chr17:27686292-27686792 ( 35) CTAGCAAGCCTGAGGGCACTGC 1 chr8:36891576-36892076 ( 6) CATGAAAGCCAGAAGGCAGTGG 1 chr4:87243400-87243900 ( 2) CATGGAAGCCAGAAAGCAGTGG 1 chr14:93519965-93520465 ( 61) AATGCAAGCCAGAAGACAATGG 1 chr1:197725036-197725536 ( 47) AATGGAAGCCAGAAGACAGTGG 1 chr10:130117518-13011801 ( 9) CTAGTAAGCCTGAGGGCACTGC 1 chr18:50961947-50962447 ( 19) AATGAAAGCCAGAAGGCAGTGG 1 chr16:58272782-58273282 ( 23) AATGAAGGCCAGAAGGCAATGG 1 chr17:80155457-80155957 ( 78) CTAGCAAGCCTGAGGGCACTAC 1 chr2:112204349-112204849 ( 73) TATGGAAGCCAGAAGACAGTGG 1 chr5:92795579-92796079 ( 2) CTAGTAAGCCTGAAGGTACTGC 1 chr11:76776399-76776899 ( 27) TTTGGAGGCCAGAAGGCAGTGG 1 chr7:42554897-42555397 ( 64) CTAGCAAGCCTGGGGGCGCTGC 1 chr6:30869211-30869711 ( 43) CTAGTAAGCCTGAGGGTACTGC 1 chr1:84287378-84287878 ( 58) CTAATAAGCCTGAGGGCACTGC 1 chr7:159328084-159328584 ( 42) GATGGAGGCCAGAAGACAATGG 1 chr1:203094976-203095476 ( 71) AATGAAGGCCAGAAGACAATGG 1 chr11:94219729-94220229 ( 20) CTAGCAAGCCTGAGGGTGCTGC 1 chr6:166052745-166053245 ( 10) TATGCAAGCCAGAAAACAATGG 1 chr1:66386669-66387169 ( 67) AATGGAAGCAAGAAGACAATGG 1 chr1:2646736-2647236 ( 47) AATGGAACCCAGAAGACAATGG 1 chr18:79930010-79930510 ( 62) AATGGAGTCCAGAGGGCAGTGG 1 chr8:8435567-8436067 ( 17) AATGGAAGTCAGAAGACAGTGG 1 chr22:32706111-32706611 ( 70) TATGCAGGCCAGAAGATAATGG 1 chr8:23600198-23600698 ( 40) CATGGAGGCTAGAAGACAATGG 1 chr1:154295569-154296069 ( 60) AATGGAGACCAGGAGGCAATGG 1 chr1:85714471-85714971 ( 2) CTAGCAAGCCTAAGGGCGCTGC 1 chr17:27695198-27695698 ( 6) CTAGCAAGCCTGCAGGCATTGC 1 chr7:149710770-149711270 ( 51) AATGAAAGTCAGGAGACAATGG 1 chr6:130644705-130645205 ( 10) CTAATAAGCCTGGAAGCACTAC 1 chr8:510294-510794 ( 56) AATGAATGCCGGAAGGCAGTGG 1 chr10:73258569-73259069 ( 46) CTAATAAGCCTGGGGGCGCTAC 1 chr12:2070386-2070886 ( 12) AATAGAATCCAGAAGATAATGG 1 chr5:151931218-151931718 ( 6) AATGTCAGCCAGAAAACAATGG 1 chr10:92662763-92663263 ( 63) CATGGAGGCCAGAAAGCCATAG 1 chr13:66760618-66761118 ( 74) CTAGCAAGCCTGGGGGTGCTGA 1 chr10:94029924-94030424 ( 11) AATGCAATCCAGAAGAGAGTGG 1 chr12:105637436-10563793 ( 60) CACGAGAGCCAGAAGACAATGG 1 chr22:19648354-19648854 ( 64) TATGGAGGCCAGAAGGAAGTGA 1 chr1:228198939-228199439 ( 2) AATGGATACCAGGAGACAATGG 1 chr12:56653753-56654253 ( 64) CTAATAAGCCTGGGGGTGCTAC 1 chr19:31863135-31863635 ( 38) GATGGAAGCCAGGAAAAAATAG 1 chr12:52761121-52761621 ( 9) CTAATAGGCCTGGGAGCGCTAC 1 chr11:110421590-11042209 ( 11) CTAACAAGCCTGGGAGTGCTAC 1 chr1:203234864-203235364 ( 78) CTAATAAGCCTGGGAGTGCTAC 1 chr7:112572638-112573138 ( 36) GTTGGAAGCCTGACAATATTGG 1 chr11:27135765-27136265 ( 60) CTGGTAAGCCTGAGTGCACTTC 1 chr1:89995025-89995525 ( 38) CTTCGAGGACGGTAAGCGCTGC 1 chr6:88031488-88031988 ( 7) CCTAGAACAAAGACAGCACTTG 1 chr5:180828680-180829180 ( 77) GTAGCGATAAGGACTGAGATAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWWGBAAGCCWGARGRCAVTGS MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 6.57973 E= 5.5e-113 16 121 -154 -152 91 -354 -1234 74 48 -354 -354 107 -67 -354 185 -1234 -103 36 70 -38 177 -354 -254 -1234 141 -1234 4 -284 -284 -254 191 -184 -225 201 -1234 -284 -225 204 -1234 -384 97 -1234 -196 55 -384 -1234 213 -1234 141 -354 4 -384 111 -196 62 -1234 -26 -1234 170 -284 41 -1234 150 -1234 -225 170 -354 -52 148 -354 -9 -1234 33 85 -9 -284 -1234 -1234 -1234 186 -52 -1234 178 -284 -284 85 131 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWWGBAAGCCWGARGRCAVTGS MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 52 E= 5.5e-113 0.307692 0.519231 0.076923 0.096154 0.519231 0.019231 0.000000 0.461538 0.384615 0.019231 0.019231 0.576923 0.173077 0.019231 0.807692 0.000000 0.134615 0.288462 0.365385 0.211538 0.942308 0.019231 0.038462 0.000000 0.730769 0.000000 0.230769 0.038462 0.038462 0.038462 0.846154 0.076923 0.057692 0.903846 0.000000 0.038462 0.057692 0.923077 0.000000 0.019231 0.538462 0.000000 0.057692 0.403846 0.019231 0.000000 0.980769 0.000000 0.730769 0.019231 0.230769 0.019231 0.596154 0.057692 0.346154 0.000000 0.230769 0.000000 0.730769 0.038462 0.365385 0.000000 0.634615 0.000000 0.057692 0.730769 0.019231 0.192308 0.769231 0.019231 0.211538 0.000000 0.346154 0.403846 0.211538 0.038462 0.000000 0.000000 0.000000 1.000000 0.192308 0.000000 0.769231 0.038462 0.038462 0.403846 0.557692 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWWGBAAGCCWGARGRCAVTGS MEME-7 regular expression -------------------------------------------------------------------------------- [CA][AT][TA]G[GCT]A[AG]GCC[AT]G[AG][AG][GA][GA]C[AG][CAG]TG[GC] -------------------------------------------------------------------------------- Time 2890.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGTGCACTCAGACCCAGYGGATTAACAT MEME-8 width = 29 sites = 19 llr = 557 E-value = 7.7e-106 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAACAT MEME-8 Description -------------------------------------------------------------------------------- Simplified A 191::19:1:9:811:9:11:9::8919: pos.-specific C ::1::9:a1911:888114::11:11811 probability G 918191:::::92:::19:9a:::1:111 matrix T 1::91:1:9111:122::6::19a1:1:9 bits 2.2 * * 1.9 * * * * * * 1.7 * * * * ** * 1.5 ** ***** * * * ** ** * Relative 1.3 ************ *** ***** * ** Entropy 1.1 ****************** ********** (42.3 bits) 0.9 ***************************** 0.6 ***************************** 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GAGTGCACTCAGACCCAGTGGATTAACAT consensus G T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAACAT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr14:103204702-10320520 + 9 3.29e-18 attttatt gagtgcactcagacccagtggattaacat ccaaaaactg chr2:102801077-102801577 + 19 3.29e-18 ggattttatg gagtgcactcagacccagtggattaacat cctgagactg chr4:41024854-41025354 - 19 5.96e-18 GATTTTTATT GAGTGCACTCAGACCCAGCGGATTAACAT CCAAAAACTG chr14:39055990-39056490 - 36 4.63e-17 GGATTTTATT GAGTGCACTCAGAACCAGTGGATTAACAT CCGAAGACTG chr1:151907302-151907802 - 68 5.06e-17 TATT GAGTGCACTCAGACCCAGCGGACTAACAT CCAAAAGCTG chr19:37364892-37365392 + 53 7.05e-17 aggatttatt gagtgcactcagacccagaggattaacat ccaaaaactg chr21:38223846-38224346 + 53 1.90e-16 ggattttatt gagtgcactcagacccggcggattaacat ccaaaggctg chr4:116015007-116015507 - 22 1.11e-15 GGATTTTATT GAGTGCACTCAGGACTAGTGGATTAACAT CCAAAGGCTG chr5:117713567-117714067 - 5 1.88e-15 GGACATTACT GAGTGCACTCACATCCAGTGGATTAACAT CCAG chr22:19316655-19317155 - 24 2.94e-15 GGATGTTATT GAGTGCACTCTGGCCTAGTGGATTAACAT CCAAAGACCG chr13:41148634-41149134 - 24 5.06e-15 GGATTTTTTT TAGTGCACTCAGACCCAGTGGATTTACAT CCAAAATTCG chr7:97439570-97440070 + 69 6.16e-15 aggatttatt gaattcactcagacccagtggattaacat cca chr7:138527579-138528079 + 53 7.20e-15 ggattttatt gagtgcactcatacccagcggattaatat ccaaagacca chrX:63475145-63475645 - 30 8.79e-15 AGGATGTATT GAGTGCACTCAGATCTAGTGGTTTAACAT CTTGGGACTG chr1:16506292-16506792 + 40 5.02e-14 aggatttatt gactgcactcaggcacagtggattaaaat ccaaaagctg chr6:88031488-88031988 - 41 9.68e-14 GATGTTTATT GAGTGCACTTAGACTTAGCAGATTAACAT CCAAAAACTG chr19:16882082-16882582 - 22 1.10e-11 GATCTTTATT GAGTGCACTCAGACCCACTGGACTCAACG TCTAAAAACT chrX:131739712-131740212 + 22 3.48e-10 ggattttact aggtggtcaccgactcagcagattaacat ccaaaggctg chr19:45078979-45079479 + 9 1.42e-07 GCGGCGCG GGCGGAACCCAGGCTCCGCGGCTTGCGGC CTGCCCGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAACAT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:103204702-10320520 3.3e-18 8_[+8]_63 chr2:102801077-102801577 3.3e-18 18_[+8]_53 chr4:41024854-41025354 6e-18 18_[-8]_53 chr14:39055990-39056490 4.6e-17 35_[-8]_36 chr1:151907302-151907802 5.1e-17 67_[-8]_4 chr19:37364892-37365392 7e-17 52_[+8]_19 chr21:38223846-38224346 1.9e-16 52_[+8]_19 chr4:116015007-116015507 1.1e-15 21_[-8]_50 chr5:117713567-117714067 1.9e-15 4_[-8]_67 chr22:19316655-19317155 2.9e-15 23_[-8]_48 chr13:41148634-41149134 5.1e-15 23_[-8]_48 chr7:97439570-97440070 6.2e-15 68_[+8]_3 chr7:138527579-138528079 7.2e-15 52_[+8]_19 chrX:63475145-63475645 8.8e-15 29_[-8]_42 chr1:16506292-16506792 5e-14 39_[+8]_32 chr6:88031488-88031988 9.7e-14 40_[-8]_31 chr19:16882082-16882582 1.1e-11 21_[-8]_50 chrX:131739712-131740212 3.5e-10 21_[+8]_50 chr19:45078979-45079479 1.4e-07 8_[+8]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAACAT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGTGCACTCAGACCCAGYGGATTAACAT width=29 seqs=19 chr14:103204702-10320520 ( 9) GAGTGCACTCAGACCCAGTGGATTAACAT 1 chr2:102801077-102801577 ( 19) GAGTGCACTCAGACCCAGTGGATTAACAT 1 chr4:41024854-41025354 ( 19) GAGTGCACTCAGACCCAGCGGATTAACAT 1 chr14:39055990-39056490 ( 36) GAGTGCACTCAGAACCAGTGGATTAACAT 1 chr1:151907302-151907802 ( 68) GAGTGCACTCAGACCCAGCGGACTAACAT 1 chr19:37364892-37365392 ( 53) GAGTGCACTCAGACCCAGAGGATTAACAT 1 chr21:38223846-38224346 ( 53) GAGTGCACTCAGACCCGGCGGATTAACAT 1 chr4:116015007-116015507 ( 22) GAGTGCACTCAGGACTAGTGGATTAACAT 1 chr5:117713567-117714067 ( 5) GAGTGCACTCACATCCAGTGGATTAACAT 1 chr22:19316655-19317155 ( 24) GAGTGCACTCTGGCCTAGTGGATTAACAT 1 chr13:41148634-41149134 ( 24) TAGTGCACTCAGACCCAGTGGATTTACAT 1 chr7:97439570-97440070 ( 69) GAATTCACTCAGACCCAGTGGATTAACAT 1 chr7:138527579-138528079 ( 53) GAGTGCACTCATACCCAGCGGATTAATAT 1 chrX:63475145-63475645 ( 30) GAGTGCACTCAGATCTAGTGGTTTAACAT 1 chr1:16506292-16506792 ( 40) GACTGCACTCAGGCACAGTGGATTAAAAT 1 chr6:88031488-88031988 ( 41) GAGTGCACTTAGACTTAGCAGATTAACAT 1 chr19:16882082-16882582 ( 22) GAGTGCACTCAGACCCACTGGACTCAACG 1 chrX:131739712-131740212 ( 22) AGGTGGTCACCGACTCAGCAGATTAACAT 1 chr19:45078979-45079479 ( 9) GGCGGAACCCAGGCTCCGCGGCTTGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAACAT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43128 bayes= 10.5176 E= 7.7e-106 -238 -1089 199 -238 170 -1089 -109 -1089 -238 -109 191 -1089 -1089 -1089 -209 178 -1089 -1089 208 -238 -238 199 -209 -1089 178 -1089 -1089 -238 -1089 215 -1089 -1089 -238 -209 -1089 170 -1089 208 -1089 -238 170 -209 -1089 -238 -1089 -209 199 -238 152 -1089 -9 -1089 -139 181 -1089 -139 -238 181 -1089 -80 -1089 181 -1089 -39 170 -209 -209 -1089 -1089 -209 208 -1089 -238 71 -1089 107 -139 -1089 199 -1089 -1089 -1089 215 -1089 170 -209 -1089 -238 -1089 -109 -1089 170 -1089 -1089 -1089 186 161 -209 -209 -238 178 -209 -1089 -1089 -139 181 -209 -238 170 -209 -209 -1089 -1089 -209 -209 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAACAT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 19 E= 7.7e-106 0.052632 0.000000 0.894737 0.052632 0.894737 0.000000 0.105263 0.000000 0.052632 0.105263 0.842105 0.000000 0.000000 0.000000 0.052632 0.947368 0.000000 0.000000 0.947368 0.052632 0.052632 0.894737 0.052632 0.000000 0.947368 0.000000 0.000000 0.052632 0.000000 1.000000 0.000000 0.000000 0.052632 0.052632 0.000000 0.894737 0.000000 0.947368 0.000000 0.052632 0.894737 0.052632 0.000000 0.052632 0.000000 0.052632 0.894737 0.052632 0.789474 0.000000 0.210526 0.000000 0.105263 0.789474 0.000000 0.105263 0.052632 0.789474 0.000000 0.157895 0.000000 0.789474 0.000000 0.210526 0.894737 0.052632 0.052632 0.000000 0.000000 0.052632 0.947368 0.000000 0.052632 0.368421 0.000000 0.578947 0.105263 0.000000 0.894737 0.000000 0.000000 0.000000 1.000000 0.000000 0.894737 0.052632 0.000000 0.052632 0.000000 0.105263 0.000000 0.894737 0.000000 0.000000 0.000000 1.000000 0.842105 0.052632 0.052632 0.052632 0.947368 0.052632 0.000000 0.000000 0.105263 0.789474 0.052632 0.052632 0.894737 0.052632 0.052632 0.000000 0.000000 0.052632 0.052632 0.894737 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAACAT MEME-8 regular expression -------------------------------------------------------------------------------- GAGTGCACTCAG[AG]CC[CT]AG[TC]GGATTAACAT -------------------------------------------------------------------------------- Time 3275.79 secs. ******************************************************************************** ******************************************************************************** MOTIF TYAYRACTTACACAGACCATCTAYGACATGC MEME-9 width = 31 sites = 16 llr = 524 E-value = 2.3e-100 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYAYRACTTACACAGACCATCTAYGACATGC MEME-9 Description -------------------------------------------------------------------------------- Simplified A ::8:59:1:91819:a:19:::9:29:a::: pos.-specific C :6:6::a::1819:::99::82:41:a:::9 probability G ::2:51:::1:2::a:1:1:::1:81:::a: matrix T a4:4:::9a:1:11::1::a38:6::::a:1 bits 2.2 * * * * 1.9 * * * ** * **** 1.7 * * * ** * * **** 1.5 * * * ******** * ****** Relative 1.3 * * ****** *********** ****** Entropy 1.1 *********** ******************* (47.2 bits) 0.9 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TCACAACTTACACAGACCATCTATGACATGC consensus T TG T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYAYRACTTACACAGACCATCTAYGACATGC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr7:103048758-103049258 + 66 1.18e-17 atgaatcctt tcacgacttacacagaccatctacaacatgc ttgg chr5:32339182-32339682 + 14 2.04e-17 atgaatcctt tcacgacttacacagaccatctatgacatgt ttggactttg chr14:23704853-23705353 + 53 3.33e-17 tatgaatcgt ttatgacttacacagaccatttatgacatgc ttggactttc chr1:228118007-228118507 + 34 4.84e-17 acgaatcctt tcacaacttacacagagcatctatgacatgc ttggattttc chr15:100588582-10058908 - 44 6.25e-17 ATAAATTATT TCATGACTTACACAGACCATCTATCACATGC TTGGACTTTC chr1:67249991-67250491 + 70 1.68e-16 atgtatcctt tcatgacttatgcagaccatctatgacatgc chr5:83767369-83767869 - 18 1.68e-16 ATGAAGCTTA TTGCAGCTTACACAGACCATCTATGACATGC TTGGACTTTC chr9:137945531-137946031 + 28 9.31e-16 caaatctttt tcacgacttacccagatcatctacgacatgc ttggactttg chr16:75742369-75742869 - 56 1.11e-15 ATGAACTTTA TCACAACTTACAAAGACCATCTGTGACATGC TTGGACTTTC chr5:54347173-54347673 - 16 2.33e-15 ATAAATTATT TCACAACTTATGCAGACAATCTATGACATGC TTGGACTTTC chr6:24673614-24674114 + 28 4.00e-15 aatcctctta ttgtgacatacacagaccattcatgacatgc ttgaactttt chr20:805693-806193 - 2 4.32e-15 AATGCTCTTA TTATAACTTAAACAGACCATTCACGACATGC T chr4:107888178-107888678 + 53 6.23e-15 aatcctctca ttgtgacttacacagaccgttcatgacatgc ttggactttc chr10:29407160-29407660 - 61 8.26e-15 TAAATCTTT TCACAGCATACACAGACCATCTACAACATGT TTGGACTTTC chr9:92983940-92984440 + 56 1.62e-14 ataaagcatt ttacaacttgcactgaccatctacggcatgc ttggactttc chr12:28209721-28210221 + 63 1.96e-14 attaatcctt tcataacttccgtagaccatctacaacatgc ttgtact -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYAYRACTTACACAGACCATCTAYGACATGC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103048758-103049258 1.2e-17 65_[+9]_4 chr5:32339182-32339682 2e-17 13_[+9]_56 chr14:23704853-23705353 3.3e-17 52_[+9]_17 chr1:228118007-228118507 4.8e-17 33_[+9]_36 chr15:100588582-10058908 6.2e-17 43_[-9]_26 chr1:67249991-67250491 1.7e-16 69_[+9] chr5:83767369-83767869 1.7e-16 17_[-9]_52 chr9:137945531-137946031 9.3e-16 27_[+9]_42 chr16:75742369-75742869 1.1e-15 55_[-9]_14 chr5:54347173-54347673 2.3e-15 15_[-9]_54 chr6:24673614-24674114 4e-15 27_[+9]_42 chr20:805693-806193 4.3e-15 1_[-9]_68 chr4:107888178-107888678 6.2e-15 52_[+9]_17 chr10:29407160-29407660 8.3e-15 60_[-9]_9 chr9:92983940-92984440 1.6e-14 55_[+9]_14 chr12:28209721-28210221 2e-14 62_[+9]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYAYRACTTACACAGACCATCTAYGACATGC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYAYRACTTACACAGACCATCTAYGACATGC width=31 seqs=16 chr7:103048758-103049258 ( 66) TCACGACTTACACAGACCATCTACAACATGC 1 chr5:32339182-32339682 ( 14) TCACGACTTACACAGACCATCTATGACATGT 1 chr14:23704853-23705353 ( 53) TTATGACTTACACAGACCATTTATGACATGC 1 chr1:228118007-228118507 ( 34) TCACAACTTACACAGAGCATCTATGACATGC 1 chr15:100588582-10058908 ( 44) TCATGACTTACACAGACCATCTATCACATGC 1 chr1:67249991-67250491 ( 70) TCATGACTTATGCAGACCATCTATGACATGC 1 chr5:83767369-83767869 ( 18) TTGCAGCTTACACAGACCATCTATGACATGC 1 chr9:137945531-137946031 ( 28) TCACGACTTACCCAGATCATCTACGACATGC 1 chr16:75742369-75742869 ( 56) TCACAACTTACAAAGACCATCTGTGACATGC 1 chr5:54347173-54347673 ( 16) TCACAACTTATGCAGACAATCTATGACATGC 1 chr6:24673614-24674114 ( 28) TTGTGACATACACAGACCATTCATGACATGC 1 chr20:805693-806193 ( 2) TTATAACTTAAACAGACCATTCACGACATGC 1 chr4:107888178-107888678 ( 53) TTGTGACTTACACAGACCGTTCATGACATGC 1 chr10:29407160-29407660 ( 61) TCACAGCATACACAGACCATCTACAACATGT 1 chr9:92983940-92984440 ( 56) TTACAACTTGCACTGACCATCTACGGCATGC 1 chr12:28209721-28210221 ( 63) TCATAACTTCCGTAGACCATCTACAACATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYAYRACTTACACAGACCATCTAYGACATGC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41930 bayes= 11.3551 E= 2.3e-100 -1064 -1064 -1064 186 -1064 148 -1064 44 156 -1064 -26 -1064 -1064 132 -1064 67 86 -1064 115 -1064 167 -1064 -84 -1064 -1064 215 -1064 -1064 -114 -1064 -1064 167 -1064 -1064 -1064 186 167 -184 -184 -1064 -214 186 -1064 -114 144 -184 -26 -1064 -214 196 -1064 -214 177 -1064 -1064 -214 -1064 -1064 215 -1064 186 -1064 -1064 -1064 -1064 196 -184 -214 -214 206 -1064 -1064 177 -1064 -184 -1064 -1064 -1064 -1064 186 -1064 174 -1064 -14 -1064 -26 -1064 156 177 -1064 -184 -1064 -1064 74 -1064 118 -55 -184 174 -1064 177 -1064 -184 -1064 -1064 215 -1064 -1064 186 -1064 -1064 -1064 -1064 -1064 -1064 186 -1064 -1064 215 -1064 -1064 196 -1064 -114 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYAYRACTTACACAGACCATCTAYGACATGC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 16 E= 2.3e-100 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.000000 0.375000 0.812500 0.000000 0.187500 0.000000 0.000000 0.562500 0.000000 0.437500 0.500000 0.000000 0.500000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.875000 0.062500 0.062500 0.000000 0.062500 0.812500 0.000000 0.125000 0.750000 0.062500 0.187500 0.000000 0.062500 0.875000 0.000000 0.062500 0.937500 0.000000 0.000000 0.062500 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.062500 0.062500 0.062500 0.937500 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.187500 0.000000 0.812500 0.937500 0.000000 0.062500 0.000000 0.000000 0.375000 0.000000 0.625000 0.187500 0.062500 0.750000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYAYRACTTACACAGACCATCTAYGACATGC MEME-9 regular expression -------------------------------------------------------------------------------- T[CT]A[CT][AG]ACTTACACAGACCAT[CT]TA[TC]GACATGC -------------------------------------------------------------------------------- Time 3654.54 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAGAAACAAATATGCTCCAAATTTTGTT MEME-10 width = 31 sites = 12 llr = 433 E-value = 2.7e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGAAACAAATATGCTCCAAATTTTGTT MEME-10 Description -------------------------------------------------------------------------------- Simplified A a191a:9aa1aaa:8::::::9aa1:::1:: pos.-specific C :::::::::8:::::::a18a1::::1::11 probability G :919:a1:::::::2:a::::::::1::81: matrix T :::::::::2:::a:a::93::::999a189 bits 2.2 * ** * 1.9 * ** ** **** *** * ** * 1.7 ** *** ** **** *** * ** * 1.5 ********* **** **** ******** * Relative 1.3 ********* ******************* * Entropy 1.1 ******************************* (52.1 bits) 0.9 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel AGAGAGAAACAAATATGCTCCAAATTTTGTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAAACAAATATGCTCCAAATTTTGTT MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr19:46059962-46060462 + 54 7.12e-19 gaaatcaggc agagagaaacaaatatgctccaaattttgtt cacaggagtt chr7:139004271-139004771 - 68 7.12e-19 GG AGAGAGAAACAAATATGCTCCAAATTTTGTT CATAGCAGTA chr1:82625542-82626042 - 37 7.12e-19 GAAATTAGGT AGAGAGAAACAAATATGCTCCAAATTTTGTT TATAGGAGTA chr3:187475574-187476074 - 10 2.17e-18 GAAATCAGGT AGAGAGAAACAAATGTGCTCCAAATTTTGTT CATAAGAGT chr5:118996061-118996561 + 21 3.04e-18 gaaatcaggt agagagaaataaatatgctccaaattttgtt cacaggaata chr10:74775053-74775553 + 21 9.83e-18 gaaatcaggt agagagaaaaaaatatgctccaaattttgtt tataggagta chr15:66889209-66889709 + 69 2.22e-17 gaaatcaggt agagaggaacaaatatgcttcaaattttgtt c chr1:109454451-109454951 + 14 2.22e-17 gaaaccaggc agggagaaacaaatatgcttcaaattttgtt cacaggagta chr13:99182413-99182913 + 3 3.67e-16 gt agagagaaacaaatatgctcccaattctggt aacagtatac chr5:157698640-157699140 - 25 1.04e-15 GAAATTAGGT AGAGAGAAACAAATATGCCTCAAATGTTATT CACAGCAATA chr6:111162476-111162976 + 17 1.15e-15 gaaaccaggc aaaaagaaataaatgtgctccaaattttgtt cactggagta chr15:69336983-69337483 - 23 2.05e-15 GCAATCAGGT AGAGAGAAACAAATATGCTCCAAAATTTTCC ACAGGAGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAAACAAATATGCTCCAAATTTTGTT MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:46059962-46060462 7.1e-19 53_[+10]_16 chr7:139004271-139004771 7.1e-19 67_[-10]_2 chr1:82625542-82626042 7.1e-19 36_[-10]_33 chr3:187475574-187476074 2.2e-18 9_[-10]_60 chr5:118996061-118996561 3e-18 20_[+10]_49 chr10:74775053-74775553 9.8e-18 20_[+10]_49 chr15:66889209-66889709 2.2e-17 68_[+10]_1 chr1:109454451-109454951 2.2e-17 13_[+10]_56 chr13:99182413-99182913 3.7e-16 2_[+10]_67 chr5:157698640-157699140 1e-15 24_[-10]_45 chr6:111162476-111162976 1.1e-15 16_[+10]_53 chr15:69336983-69337483 2e-15 22_[-10]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAAACAAATATGCTCCAAATTTTGTT MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGAAACAAATATGCTCCAAATTTTGTT width=31 seqs=12 chr19:46059962-46060462 ( 54) AGAGAGAAACAAATATGCTCCAAATTTTGTT 1 chr7:139004271-139004771 ( 68) AGAGAGAAACAAATATGCTCCAAATTTTGTT 1 chr1:82625542-82626042 ( 37) AGAGAGAAACAAATATGCTCCAAATTTTGTT 1 chr3:187475574-187476074 ( 10) AGAGAGAAACAAATGTGCTCCAAATTTTGTT 1 chr5:118996061-118996561 ( 21) AGAGAGAAATAAATATGCTCCAAATTTTGTT 1 chr10:74775053-74775553 ( 21) AGAGAGAAAAAAATATGCTCCAAATTTTGTT 1 chr15:66889209-66889709 ( 69) AGAGAGGAACAAATATGCTTCAAATTTTGTT 1 chr1:109454451-109454951 ( 14) AGGGAGAAACAAATATGCTTCAAATTTTGTT 1 chr13:99182413-99182913 ( 3) AGAGAGAAACAAATATGCTCCCAATTCTGGT 1 chr5:157698640-157699140 ( 25) AGAGAGAAACAAATATGCCTCAAATGTTATT 1 chr6:111162476-111162976 ( 17) AAAAAGAAATAAATGTGCTCCAAATTTTGTT 1 chr15:69336983-69337483 ( 23) AGAGAGAAACAAATATGCTCCAAAATTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAAACAAATATGCTCCAAATTTTGTT MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41930 bayes= 12.2179 E= 2.7e-080 186 -1023 -1023 -1023 -172 -1023 203 -1023 173 -1023 -143 -1023 -172 -1023 203 -1023 186 -1023 -1023 -1023 -1023 -1023 215 -1023 173 -1023 -143 -1023 186 -1023 -1023 -1023 186 -1023 -1023 -1023 -172 174 -1023 -72 186 -1023 -1023 -1023 186 -1023 -1023 -1023 186 -1023 -1023 -1023 -1023 -1023 -1023 186 160 -1023 -43 -1023 -1023 -1023 -1023 186 -1023 -1023 215 -1023 -1023 215 -1023 -1023 -1023 -143 -1023 173 -1023 174 -1023 -14 -1023 215 -1023 -1023 173 -143 -1023 -1023 186 -1023 -1023 -1023 186 -1023 -1023 -1023 -172 -1023 -1023 173 -1023 -1023 -143 173 -1023 -143 -1023 173 -1023 -1023 -1023 186 -172 -1023 189 -172 -1023 -143 -143 160 -1023 -143 -1023 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAAACAAATATGCTCCAAATTTTGTT MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 12 E= 2.7e-080 1.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.916667 0.000000 0.083333 0.000000 0.083333 0.000000 0.916667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.000000 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.750000 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.833333 0.000000 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.000000 0.916667 0.000000 0.000000 0.083333 0.916667 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 1.000000 0.083333 0.000000 0.833333 0.083333 0.000000 0.083333 0.083333 0.833333 0.000000 0.083333 0.000000 0.916667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAAACAAATATGCTCCAAATTTTGTT MEME-10 regular expression -------------------------------------------------------------------------------- AGAGAGAAACAAATATGCT[CT]CAAATTTTGTT -------------------------------------------------------------------------------- Time 4028.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:140718654-140719154 4.12e-01 100 chr10:71197915-71198415 6.87e-01 100 chrUn_KI270587v1:1526-20 5.04e-01 100 chr1:52955537-52956037 2.90e-02 26_[-6(2.18e-05)]_58 chr4:76326385-76326885 2.82e-01 100 chr5:133377764-133378264 2.18e-01 100 chr1:232793943-232794443 6.36e-01 100 chr3:138486523-138487023 8.37e-22 8_[+2(7.43e-11)]_18_[+1(1.27e-16)]_\ 2_[+3(2.13e-10)]_11 chr11:110421590-11042209 1.12e-17 10_[+7(2.64e-07)]_[+2(2.79e-10)]_2_\ [+6(1.05e-08)]_1_[+1(4.94e-09)]_4 chr18:3297245-3297745 4.34e-01 100 chr1:151458127-151458627 1.95e-01 100 chr1:202888428-202888928 8.76e-01 100 chr8:15582496-15582996 3.63e-01 100 chr1:226870487-226870987 9.01e-01 100 chr19:44211271-44211771 1.15e-01 100 chr4:186216709-186217209 1.82e-01 100 chr13:66760618-66761118 1.92e-24 9_[-1(1.31e-14)]_1_[-6(6.48e-10)]_2_\ [-2(1.02e-11)]_[-7(4.13e-08)]_5 chr5:78504921-78505421 5.90e-01 100 chr16:70778849-70779349 9.52e-02 100 chr10:91908455-91908955 9.94e-01 100 chr5:168579203-168579703 9.92e-01 100 chr6:89320082-89320582 3.01e-03 54_[+6(1.02e-06)]_30 chr2:173298486-173298986 4.11e-01 100 chr5:82405885-82406385 2.54e-01 100 chr3:9194440-9194940 1.39e-01 100 chr12:1594497-1594997 9.32e-01 100 chr2:61017036-61017536 7.19e-01 100 chr1:16677994-16678494 5.92e-01 100 chr4:110904675-110905175 1.71e-01 100 chrX:131739712-131740212 3.35e-05 21_[+8(3.48e-10)]_50 chr7:159328084-159328584 4.50e-08 19_[-4(1.81e-08)]_[+7(6.39e-10)]_37 chr17:50707668-50708168 4.61e-01 100 chr6:11044378-11044878 8.14e-01 100 chr1:228902936-228903436 5.26e-01 100 chr19:16934425-16934925 2.46e-01 100 chr7:128783195-128783695 6.19e-01 100 chr17:39769938-39770438 1.19e-01 32_[-4(1.03e-06)]_46 chr12:105313695-10531419 6.22e-22 13_[-3(4.73e-08)]_3_[-1(1.55e-13)]_\ 1_[-6(9.11e-10)]_2_[-2(9.96e-10)]_4 chr1:40475194-40475694 7.94e-01 100 chr14:49861979-49862479 2.82e-01 10_[-7(6.13e-05)]_68 chr7:130258471-130258971 9.38e-03 37_[+3(7.61e-05)]_47 chr1:81126879-81127379 2.28e-01 100 chr4:77075933-77076433 3.60e-01 100 chr5:180828680-180829180 4.52e-14 10_[+2(7.00e-05)]_1_[-3(6.50e-10)]_\ 2_[-1(9.33e-15)]_26 chr11:94219729-94220229 8.50e-16 19_[+7(1.08e-09)]_[+2(3.24e-10)]_2_\ [+6(3.24e-10)]_22 chr10:73258569-73259069 2.12e-11 8_[-6(1.05e-08)]_2_[-2(4.59e-09)]_\ [-7(3.44e-08)]_33 chr6:116859258-116859758 4.47e-01 43_[-8(6.65e-05)]_28 chr4:107888178-107888678 1.10e-08 52_[+9(6.23e-15)]_17 chr12:1747606-1748106 2.17e-01 29_[-1(5.97e-05)]_45 chr19:58519713-58520213 6.38e-01 100 chr17:82519202-82519702 9.98e-01 100 chr6:136831863-136832363 5.93e-04 29_[-4(2.28e-09)]_49 chr10:15813376-15813876 6.41e-01 100 chr15:55554999-55555499 8.70e-02 100 chr6:52243221-52243721 3.63e-01 100 chr12:62463165-62463665 2.23e-12 39_[-3(2.13e-10)]_2_[-1(6.47e-15)]_\ 17 chr8:71076046-71076546 2.26e-05 20_[-7(1.88e-05)]_[+4(5.03e-08)]_16_\ [+6(8.74e-05)]_4 chr19:41666019-41666519 9.90e-03 66_[+7(4.95e-05)]_12 chr6:85679279-85679779 1.17e-01 100 chr5:77168806-77169306 5.26e-01 100 chr1:59077958-59078458 9.90e-01 100 chr10:89620156-89620656 7.55e-19 29_[-3(3.87e-10)]_3_[-1(2.44e-15)]_\ 1_[-6(3.24e-10)]_9 chr4:116015007-116015507 7.32e-09 21_[-8(1.11e-15)]_50 chr9:137945531-137946031 1.74e-08 27_[+9(9.31e-16)]_42 chr1:66386669-66387169 3.98e-11 13_[+10(5.54e-05)]_[-4(1.17e-06)]_\ [+7(1.99e-09)]_12 chr15:65868740-65869240 8.70e-01 100 chr2:39790361-39790861 1.33e-25 14_[+2(3.05e-11)]_2_[+6(3.24e-10)]_\ 1_[+1(1.87e-15)]_3_[+3(5.85e-08)]_3 chr19:37371034-37371534 8.00e-01 100 chr20:18587876-18588376 9.73e-01 100 chrX:40050488-40050988 7.58e-01 100 chr10:8534069-8534569 4.67e-01 100 chr5:54171934-54172434 5.66e-01 100 chr1:240091739-240092239 9.54e-01 100 chr6:111162476-111162976 8.46e-09 16_[+10(1.15e-15)]_53 chr17:68277763-68278263 6.13e-01 100 chr17:16001510-16002010 1.99e-01 100 chr5:83767369-83767869 1.96e-09 17_[-9(1.68e-16)]_52 chr8:10751419-10751919 7.03e-04 7_[-7(1.76e-08)]_71 chr22:44772961-44773461 1.50e-01 27_[-1(1.41e-05)]_47 chr2:31693825-31694325 9.52e-01 100 chr10:93702409-93702909 5.88e-01 100 chr5:158451541-158452041 7.30e-01 100 chr13:99182413-99182913 6.51e-09 2_[+10(3.67e-16)]_67 chr6:160983326-160983826 1.06e-03 32_[+4(2.28e-09)]_46 chr16:21599248-21599748 8.68e-01 100 chr6:79078088-79078588 9.21e-01 100 chr3:168975071-168975571 3.82e-01 100 chr10:95732873-95733373 2.35e-23 1_[+2(1.69e-10)]_2_[+6(9.11e-10)]_1_\ [+1(2.38e-14)]_3_[+3(1.04e-09)]_16 chr10:70651589-70652089 4.76e-10 16_[+5(1.14e-18)]_50 chr22:32706111-32706611 7.32e-12 47_[-4(6.21e-14)]_[+7(5.01e-09)]_9 chr1:23362109-23362609 5.44e-01 100 chr15:59960256-59960756 1.42e-02 37_[+4(3.68e-05)]_41 chr18:4060683-4061183 1.92e-01 100 chr11:128998967-12899946 2.39e-18 30_[-3(4.32e-09)]_3_[-1(1.27e-16)]_\ 1_[-6(6.48e-10)]_8 chr18:80088729-80089229 1.65e-04 2_[+4(1.12e-07)]_76 chr14:102987965-10298846 4.66e-01 100 chrX:13647544-13648044 6.14e-02 83_[-3(9.16e-05)]_1 chr19:41501384-41501884 9.73e-01 100 chr2:27050948-27051448 2.36e-01 100 chr5:125704788-125705288 9.39e-01 100 chr1:184813499-184813999 2.76e-02 100 chr5:77995774-77996274 8.82e-01 100 chr6:28643216-28643716 7.42e-01 100 chr6:11093719-11094219 1.00e+00 100 chr10:120851003-12085150 4.90e-02 36_[+7(2.59e-06)]_42 chr9:105735276-105735776 1.42e-01 100 chr16:72927644-72928144 6.10e-02 49_[+9(7.08e-06)]_20 chr6:25157758-25158258 1.73e-13 26_[-3(2.13e-10)]_2_[-1(2.38e-14)]_\ 30 chr7:149379605-149380105 6.15e-01 100 chr11:76776399-76776899 6.91e-11 26_[-7(4.25e-10)]_[+4(3.02e-13)]_30 chr1:198837482-198837982 8.82e-03 35_[+1(6.63e-06)]_39 chr1:99969687-99970187 9.26e-01 100 chr3:13179026-13179526 5.12e-01 100 chr1:168112901-168113401 4.19e-01 100 chr1:113391412-113391912 9.16e-02 100 chr11:86592896-86593396 1.16e-01 73_[+2(6.19e-05)]_8 chr12:56636671-56637171 4.48e-01 100 chr5:32187625-32188125 8.11e-01 100 chr1:93833276-93833776 8.79e-25 12_[+2(3.05e-11)]_2_[+6(6.48e-10)]_\ 1_[+1(7.73e-15)]_3_[+3(2.33e-07)]_5 chr3:53347455-53347955 9.64e-01 100 chr1:147172359-147172859 5.88e-01 100 chr14:103362742-10336324 6.67e-07 48_[-7(3.98e-05)]_[+4(4.26e-12)]_8 chr1:2646736-2647236 4.53e-05 46_[-7(2.25e-09)]_32 chr12:2070386-2070886 6.71e-11 11_[-7(3.77e-08)]_[+4(2.68e-12)]_45 chr10:90136671-90137171 9.55e-01 100 chr3:197967587-197968087 9.75e-07 16_[+3(2.13e-10)]_1_[-2(7.00e-05)]_\ 48 chr16:88543219-88543719 2.35e-01 [+9(6.10e-05)]_69 chr12:56863775-56864275 6.28e-01 100 chr1:206612200-206612700 6.47e-01 100 chr3:49233602-49234102 4.77e-01 100 chr1:228198939-228199439 1.07e-07 1_[-7(1.18e-07)]_[+4(1.42e-11)]_55 chr5:10288461-10288961 5.44e-01 100 chr17:31638353-31638853 9.43e-01 100 chr1:203234864-203235364 4.36e-19 13_[-1(1.67e-11)]_1_[-6(2.56e-09)]_\ 2_[-2(3.27e-09)]_[-7(3.86e-07)]_1 chr11:93993683-93994183 3.33e-01 100 chr7:123417554-123418054 6.49e-04 35_[-4(2.56e-07)]_43 chr8:37992886-37993386 9.58e-01 100 chr18:50879035-50879535 9.67e-01 100 chr1:9095727-9096227 1.15e-02 100 chr14:93519965-93520465 1.22e-05 60_[-7(3.91e-11)]_18 chr5:14439308-14439808 1.97e-01 100 chr1:177984094-177984594 3.04e-01 100 chr2:112869362-112869862 2.11e-01 100 chr8:94719593-94720093 9.51e-01 100 chr3:183420723-183421223 6.46e-02 100 chr1:224932586-224933086 8.13e-02 64_[+10(1.48e-05)]_5 chr6:29875670-29876170 8.89e-01 100 chr6:75243761-75244261 5.79e-01 100 chr7:155002975-155003475 9.29e-01 100 chr7:128239001-128239501 1.67e-13 26_[+2(7.00e-05)]_1_[-3(2.13e-10)]_\ 2_[-1(9.81e-13)]_10 chr12:80186692-80187192 3.93e-01 100 chr5:125073020-125073520 3.82e-04 59_[-4(4.09e-10)]_19 chr16:53384450-53384950 1.65e-13 45_[-3(3.87e-10)]_3_[-1(2.83e-16)]_\ 10 chr6:131628044-131628544 9.19e-01 100 chr19:32372701-32373201 3.50e-01 100 chr7:131058421-131058921 4.02e-01 100 chr16:16158931-16159431 9.55e-01 100 chr1:234700135-234700635 3.47e-01 100 chr6:117624847-117625347 5.83e-02 27_[+10(3.64e-05)]_42 chr8:37637899-37638399 6.37e-01 100 chr19:58380543-58381043 9.90e-01 100 chr1:179882523-179883023 9.97e-01 100 chr22:19432230-19432730 9.94e-01 100 chr5:32217746-32218246 4.58e-01 100 chr1:226524499-226524999 2.25e-01 100 chr3:17730359-17730859 4.94e-01 100 chr19:37935251-37935751 1.14e-01 100 chrX:149010181-149010681 7.00e-01 100 chr5:180253327-180253827 9.03e-02 100 chr10:75582029-75582529 8.25e-03 52_[-4(6.96e-08)]_26 chr1:226703246-226703746 9.71e-01 100 chr12:114914177-11491467 3.99e-01 100 chr12:65540165-65540665 1.88e-01 100 chr10:33325906-33326406 1.77e-01 100 chr13:52502222-52502722 5.59e-21 17_[-1(9.83e-16)]_1_[-6(3.24e-10)]_\ 2_[-2(1.99e-09)]_19 chr19:39506766-39507266 5.15e-01 100 chr19:247155-247655 6.22e-01 57_[-7(2.18e-05)]_21 chr19:31863135-31863635 3.14e-07 15_[-4(2.52e-09)]_[+7(2.09e-07)]_41 chr19:43902536-43903036 1.61e-01 100 chr1:37989836-37990336 6.12e-01 100 chr1:146035482-146035982 6.26e-01 100 chr10:129491108-12949160 4.81e-02 25_[-6(6.92e-05)]_59 chr7:156640098-156640598 6.08e-01 100 chr7:20514319-20514819 7.90e-01 100 chr17:76615109-76615609 9.76e-01 100 chr13:52309839-52310339 1.76e-27 16_[+2(2.96e-12)]_2_[+6(3.24e-10)]_\ 1_[+1(9.83e-16)]_2_[+3(1.30e-09)]_2 chr1:224621790-224622290 1.34e-01 100 chr1:233112941-233113441 4.46e-02 100 chr19:36748564-36749064 1.31e-01 51_[+10(5.77e-05)]_18 chr6:110462874-110463374 3.09e-01 100 chr12:359049-359549 4.25e-02 56_[+9(8.81e-05)]_13 chr3:12556705-12557205 9.86e-01 100 chr19:43226904-43227404 5.04e-01 100 chr10:92662763-92663263 1.77e-04 62_[-7(4.13e-08)]_16 chr16:942348-942848 8.84e-01 100 chr9:128771755-128772255 9.97e-01 100 chr14:90396721-90397221 8.23e-01 100 chr5:170755640-170756140 1.94e-01 100 chr6:24673614-24674114 2.24e-09 27_[+9(4.00e-15)]_42 chr18:35497710-35498210 2.64e-01 56_[-2(5.48e-05)]_25 chr3:10320887-10321387 4.99e-01 100 chr1:109454451-109454951 1.74e-10 13_[+10(2.22e-17)]_32_\ [-4(9.31e-05)]_2 chr17:27686292-27686792 2.18e-18 34_[+7(1.78e-11)]_[+2(2.96e-12)]_2_\ [+6(6.48e-10)]_7 chr20:58650929-58651429 9.26e-01 100 chr16:2603083-2603583 4.48e-01 100 chr12:105637436-10563793 6.01e-07 37_[-4(2.06e-09)]_[+7(8.41e-08)]_19 chr14:23704853-23705353 1.83e-09 52_[+9(3.33e-17)]_17 chr3:15738615-15739115 1.96e-14 17_[+2(2.79e-10)]_2_[+6(1.55e-07)]_\ 2_[+1(8.14e-11)]_18 chr16:75054131-75054631 5.37e-01 100 chr1:225280575-225281075 1.22e-10 14_[-4(1.66e-11)]_[+7(3.58e-07)]_42 chr3:61821634-61822134 5.96e-01 100 chr10:130117518-13011801 2.10e-22 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chr3:128859529-128860029 1.19e-03 7_[+8(6.03e-09)]_28_[+8(3.31e-05)]_\ 7 chr10:29407160-29407660 7.52e-08 60_[-9(8.26e-15)]_9 chr2:160087796-160088296 8.59e-01 100 chr4:184136502-184137002 1.42e-01 31_[-7(7.85e-05)]_47 chr11:17371587-17372087 7.46e-01 100 chr11:27291259-27291759 5.00e-10 51_[-5(3.31e-18)]_15 chr6:33152106-33152606 7.48e-23 6_[+2(2.96e-12)]_18_[+1(1.27e-16)]_\ 2_[+3(2.13e-10)]_13 chr6:99026111-99026611 4.34e-07 53_[-5(2.77e-15)]_13 chr5:135202959-135203459 1.18e-02 100 chr1:232620479-232620979 3.86e-01 100 chr19:29139184-29139684 4.59e-02 39_[+4(3.18e-05)]_39 chr15:79878025-79878525 3.92e-06 50_[+8(3.48e-10)]_21 chr12:71436236-71436736 1.06e-03 40_[-4(8.16e-08)]_38 chr5:140295317-140295817 4.75e-01 100 chr3:193248738-193249238 1.98e-01 100 chr19:44206945-44207445 1.96e-01 53_[+6(5.49e-05)]_31 chr20:20130305-20130805 5.33e-02 23_[+4(3.68e-05)]_55 chr19:37881811-37882311 3.06e-01 100 chr7:111796646-111797146 9.95e-01 100 chr4:24965569-24966069 3.26e-11 52_[+5(1.07e-19)]_14 chr19:55259119-55259619 8.48e-01 100 chr4:87243400-87243900 1.51e-05 1_[+7(3.25e-11)]_77 chr4:128265521-128266021 1.38e-26 5_[+2(1.02e-11)]_2_[+6(6.48e-10)]_1_\ [+1(3.13e-14)]_3_[+3(3.87e-10)]_12 chr15:75368439-75368939 3.28e-01 100 chr1:197725036-197725536 1.02e-10 24_[-4(8.94e-10)]_[+7(4.73e-11)]_32 chr21:34543821-34544321 6.51e-01 100 chr2:165825006-165825506 6.19e-01 100 chr5:81736008-81736508 2.04e-01 100 chr12:14257616-14258116 6.55e-01 100 chr14:39055990-39056490 4.17e-09 35_[-8(4.63e-17)]_36 chr6:90197805-90198305 9.00e-13 20_[+5(2.98e-19)]_46 chr15:69007994-69008494 5.23e-01 100 chr12:52761121-52761621 5.55e-24 8_[+7(2.44e-07)]_[+2(6.60e-12)]_2_\ [+6(6.48e-10)]_1_[+1(1.16e-14)]_6 chr2:171631286-171631786 2.73e-01 100 chr19:37594314-37594814 9.95e-01 100 chr19:40919454-40919954 6.49e-12 45_[-3(2.13e-10)]_2_[-1(9.12e-13)]_\ 11 chr6:132394945-132395445 1.01e-01 100 chr20:1466668-1467168 9.98e-01 100 chr4:49709154-49709654 4.35e-01 100 chr14:95291767-95292267 5.37e-01 100 chr6:107447577-107448077 1.05e-03 73_[-4(2.28e-09)]_5 chr15:69336983-69337483 3.75e-08 22_[-10(2.05e-15)]_10_\ [-10(2.15e-05)]_6 chr12:121404663-12140516 9.48e-01 100 chr1:154295569-154296069 8.11e-10 37_[-4(2.30e-10)]_[+7(8.60e-09)]_19 chr10:978773-979273 3.26e-03 8_[+4(2.06e-09)]_70 chr17:61619441-61619941 4.04e-01 100 chr1:163321567-163322067 3.29e-01 100 chr2:6845323-6845823 3.75e-01 100 chr1:32458742-32459242 5.59e-16 20_[-3(2.13e-10)]_2_[-1(1.27e-16)]_\ 36 chr7:149710770-149711270 4.68e-08 28_[-4(5.74e-10)]_[+7(2.85e-08)]_28 chr1:11505903-11506403 1.14e-01 100 chr8:43110217-43110717 1.71e-01 100 chr10:132052009-13205250 2.05e-05 22_[+10(3.29e-05)]_10_\ [+4(2.96e-07)]_15 chr7:625333-625833 9.95e-01 100 chr14:90823412-90823912 3.55e-13 48_[-3(2.13e-10)]_2_[-1(3.72e-14)]_\ 8 chr1:205122038-205122538 9.53e-01 100 chr16:58359987-58360487 2.02e-02 25_[+10(9.29e-05)]_44 chr8:36940805-36941305 2.74e-03 12_[+1(3.78e-05)]_62 chr12:56653753-56654253 3.60e-13 26_[-6(1.05e-08)]_2_[-2(6.60e-12)]_\ [-7(1.28e-07)]_15 chr22:19648354-19648854 1.35e-08 41_[-4(1.55e-12)]_[+7(1.18e-07)]_15 chr1:228118007-228118507 3.09e-11 33_[+9(4.84e-17)]_36 chr3:171854582-171855082 6.23e-02 50_[-1(7.54e-05)]_24 chr6:52200061-52200561 1.87e-12 11_[+6(9.11e-10)]_27_[+3(2.13e-10)]_\ 30 chr5:134262627-134263127 2.31e-26 4_[+2(4.98e-10)]_2_[+6(3.24e-10)]_1_\ [+1(7.53e-16)]_3_[+3(3.87e-10)]_13 chr17:80155457-80155957 1.68e-24 13_[-1(1.31e-14)]_1_[-6(9.11e-10)]_\ 2_[-2(4.08e-10)]_[-7(2.78e-10)]_1 chr9:129513196-129513696 7.04e-05 30_[-7(6.90e-07)]_48 chr10:21724686-21725186 1.45e-01 100 chr19:16882082-16882582 9.59e-06 21_[-8(1.10e-11)]_50 chr8:37427468-37427968 2.45e-05 44_[-4(2.38e-07)]_[+7(2.44e-07)]_12 chrX:63475145-63475645 9.27e-07 29_[-8(8.79e-15)]_42 chr7:103048758-103049258 2.05e-11 26_[-10(3.76e-05)]_8_[+9(1.18e-17)]_\ 4 chr15:67684963-67685463 1.88e-01 100 chr5:134284395-134284895 1.19e-27 [+7(1.78e-11)]_[+2(2.96e-12)]_2_\ [+6(3.24e-10)]_1_[+1(5.71e-14)]_14 chr10:71945789-71946289 1.25e-01 58_[+2(2.83e-05)]_23 chr11:27135765-27136265 2.28e-12 22_[-6(9.11e-10)]_2_[-2(1.04e-10)]_\ [-7(7.41e-07)]_19 chr5:5409115-5409615 1.19e-07 32_[+5(1.19e-15)]_34 chr6:88031488-88031988 1.92e-08 6_[-7(8.86e-05)]_12_[-8(9.68e-14)]_\ 31 chr14:103204702-10320520 8.72e-12 8_[+8(3.29e-18)]_63 chr18:45755963-45756463 1.92e-01 100 chr7:97439570-97440070 3.07e-07 68_[+8(6.16e-15)]_3 chr17:78558354-78558854 9.96e-01 100 chr1:80054150-80054650 5.30e-01 100 chr6:112328836-112329336 2.77e-14 3_[+6(7.24e-09)]_1_[+1(1.79e-13)]_3_\ [+3(8.15e-09)]_35 chr1:224914224-224914724 2.08e-01 100 chr6:82260181-82260681 2.54e-02 2_[-8(2.88e-05)]_69 chr18:50961947-50962447 5.42e-10 18_[-7(9.44e-11)]_[+4(1.16e-08)]_38 chr6:33101076-33101576 8.61e-19 21_[+7(1.78e-11)]_[+2(1.02e-11)]_2_\ [+6(9.11e-10)]_20 chr19:38935241-38935741 5.46e-01 100 chr12:65624492-65624992 2.97e-02 100 chr1:151907302-151907802 4.68e-10 67_[-8(5.06e-17)]_4 chr18:80022628-80023128 9.71e-01 100 chr17:28262056-28262556 1.21e-15 18_[-1(3.34e-15)]_18_[-2(5.88e-11)]_\ 19 chr1:29379378-29379878 3.70e-01 100 chr4:25223752-25224252 1.68e-01 100 chr6:5323928-5324428 1.22e-02 10_[-6(5.86e-05)]_74 chr12:42617579-42618079 7.62e-02 100 chr5:125198491-125198991 4.27e-01 100 chr8:43124333-43124833 9.16e-04 42_[+8(4.76e-08)]_29 chr19:19468346-19468846 1.64e-06 29_[+9(5.29e-05)]_1_[-4(3.40e-09)]_\ 17 chr1:84287378-84287878 2.07e-16 20_[-6(6.48e-10)]_2_[-2(2.09e-11)]_\ [-7(6.39e-10)]_21 chr7:138527579-138528079 1.11e-08 52_[+8(7.20e-15)]_19 chr5:32339182-32339682 7.56e-10 13_[+9(2.04e-17)]_56 chr17:60557782-60558282 2.29e-01 100 chrUn_KI270467v1:2629-31 5.81e-01 100 chr17:77233761-77234261 9.96e-01 100 chr5:59713056-59713556 5.46e-12 32_[+5(2.22e-19)]_34 chr9:132697218-132697718 7.27e-06 44_[-4(8.05e-09)]_[+7(5.63e-05)]_12 chr19:34570071-34570571 1.81e-11 11_[-1(1.27e-16)]_36_[-7(2.28e-05)]_\ 5 chr13:41148634-41149134 1.90e-09 23_[-8(5.06e-15)]_48 chr19:57566375-57566875 9.03e-01 100 chr1:93078928-93079428 1.00e+00 100 chr4:41024854-41025354 5.11e-11 18_[-8(5.96e-18)]_3_[-2(5.10e-05)]_\ 31 chr19:37364892-37365392 8.80e-09 52_[+8(7.05e-17)]_19 chr7:149529039-149529539 8.34e-01 100 chr19:6291967-6292467 8.26e-01 100 chr17:27695198-27695698 1.07e-24 5_[+7(2.85e-08)]_[+2(5.88e-11)]_2_\ [+6(6.48e-10)]_1_[+1(1.53e-14)]_9 chr6:83867507-83868007 3.96e-11 28_[+5(8.81e-20)]_38 chr4:83378370-83378870 2.56e-10 31_[+5(6.94e-19)]_35 chr21:38223846-38224346 4.75e-10 52_[+8(1.90e-16)]_19 chr4:41294389-41294889 6.95e-11 22_[+5(1.68e-18)]_44 chr22:19316655-19317155 9.40e-09 23_[-8(2.94e-15)]_48 chr21:37348510-37349010 7.09e-04 38_[+4(4.26e-08)]_40 chr1:229221463-229221963 1.75e-01 100 chr3:183653142-183653642 8.91e-04 49_[+8(1.37e-07)]_22 chr1:16506292-16506792 8.24e-07 39_[+8(5.02e-14)]_32 chr10:87586142-87586642 4.03e-01 100 chr5:68932788-68933288 1.71e-09 40_[-5(1.86e-17)]_26 chr19:1383548-1384048 6.58e-01 100 chrX:73944041-73944541 8.04e-01 100 chrUn_KI270467v1:3137-36 3.82e-01 100 chr17:26603638-26604138 8.52e-01 100 chr1:224343544-224344044 4.12e-07 21_[+4(4.91e-13)]_57 chrUn_KI270467v1:2005-25 5.22e-01 100 chr16:1271736-1272236 6.35e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************