# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Tue Dec 04 13:16:55 PST 2018) # negatives: 599 from /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF626.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Tue Dec 04 13:16:55 PST 2018) # host: kali.stanford.edu # when: Tue Dec 04 14:24:13 PST 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.266 C 0.234 G 0.232 T 0.267 MOTIF AAGWCAGA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AAGWCAGA TCTGWCTT 62 1 1.4e-018 4.2e-014 # AAGACAGA TCTGTCTT 51 0 1.5e-016 4.5e-012 # AAGTCAGA TCTGACTT 11 1 3.1e-003 9.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 4.2e-014 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.822581 0.000000 0.000000 0.177419 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGATAAGG DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AGATAAGG CCTTATCT 53 0 3.3e-017 1.0e-012 # AGATAAGG CCTTATCT 53 0 3.3e-017 1.0e-012 letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 1.0e-012 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TCTGGSA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TCTGGSA TSCCAGA 83 10 8.5e-017 2.6e-012 # TCTGGGA TCCCAGA 63 9 5.8e-012 1.8e-007 # TCTGGCA TGCCAGA 20 2 5.3e-005 1.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 87 E= 2.6e-012 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.241379 0.758621 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCTMTAAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TCTMTAAA TTTAKAGA 55 3 3.5e-014 1.1e-009 # TCTATAAA TTTATAGA 32 1 2.7e-009 8.1e-005 # TCTCTAAA TTTAGAGA 23 2 8.1e-006 2.5e-001 letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 1.1e-009 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.581818 0.418182 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CWCCTGCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CWCCTGCA TGCAGGWG 43 1 1.2e-012 3.7e-008 # CTCCTGCA TGCAGGAG 29 1 2.1e-008 6.3e-004 # CACCTGCA TGCAGGTG 14 0 5.7e-005 1.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 3.7e-008 0.000000 1.000000 0.000000 0.000000 0.325581 0.000000 0.000000 0.674419 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF MTGAAATA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST MTGAAATA TATTTCAK 54 6 1.8e-011 5.5e-007 # ATGAAATA TATTTCAT 37 2 8.5e-010 2.6e-005 # CTGAAATA TATTTCAG 17 4 3.4e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 5.5e-007 0.685185 0.314815 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAAKGGA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ACAAKGGA TCCMTTGT 30 1 1.1e-008 3.2e-004 # ACAATGGA TCCATTGT 22 1 2.4e-006 7.2e-002 # ACAAGGGA TCCCTTGT 8 0 3.8e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.2e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RTGACTCA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST RTGACTCA TGAGTCAY 28 1 4.1e-008 1.3e-003 # ATGACTCA TGAGTCAT 22 1 2.4e-006 7.2e-002 # GTGACTCA TGAGTCAC 7 0 7.7e-003 2.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.3e-003 0.758621 0.000000 0.241379 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAACYGCA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CAACYGCA TGCRGTTG 38 5 7.9e-008 2.4e-003 # CAACTGCA TGCAGTTG 29 5 1.5e-005 4.6e-001 # CAACCGCA TGCGGTTG 9 0 1.9e-003 5.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.4e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.236842 0.000000 0.763158 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGCATTC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ATGCATTC GAATGCAT 23 0 9.6e-008 2.9e-003 # ATGCATTC GAATGCAT 23 0 9.6e-008 2.9e-003 letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.9e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ARAGAAA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ARAGAAA TTTCTYT 87 34 2.1e-007 6.4e-003 # AAAGAAA TTTCTTT 53 20 4.4e-005 1.3e+000 # AGAGAAA TTTCTCT 40 15 3.9e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 95 E= 6.4e-003 1.000000 0.000000 0.000000 0.000000 0.578947 0.000000 0.421053 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAKAAA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CAKAAA TTTMTG 140 74 4.0e-007 1.2e-002 # CATAAA TTTATG 68 28 1.3e-005 4.0e-001 # CAGAAA TTTCTG 81 47 9.7e-004 2.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 172 E= 1.2e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.511628 0.488372 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAGCWGA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ACAGCWGA TCWGCTGT 37 4 3.2e-008 9.6e-004 # ACAGCTGA TCAGCTGT 24 2 4.3e-006 1.3e-001 # ACAGCAGA TCTGCTGT 13 2 3.5e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 9.6e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.342105 0.000000 0.000000 0.657895 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF SCGGAA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST SCGGAA TTCCGS 49 13 1.4e-006 4.1e-002 # CCGGAA TTCCGG 29 7 1.3e-004 3.8e+000 # GCGGAA TTCCGC 25 6 3.8e-004 1.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 58 E= 4.1e-002 0.000000 0.534483 0.465517 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 61.38 seconds