Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
CYTGGCACVRTGCCAR 16 CTTGGCACAGTGCCAG
BTKTBTKTGTKTRTKTBTKTGTKTKKB 27 GTTTGTTTGTTTGTTTGTTTGTTTTTG
CACATCCTBHAGTARCTTT 19 CACATCCTTCAGTAGCTTT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.237 C 0.263 G 0.263 T 0.237


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CACATCCTBHAGTARCTTT MEME-3 chr4 + 5715581 5715599 3.03e-12 1.74e-06 cacatccttcagtagcttt
CACATCCTBHAGTARCTTT MEME-3 chr19 + 1771343 1771361 6.4e-12 1.83e-06 cacatcctccagtagcttt
CACATCCTBHAGTARCTTT MEME-3 chr21 - 44609386 44609404 2.71e-11 4.07e-06 CACATCCTCCAGTAACTTT
CACATCCTBHAGTARCTTT MEME-3 chr15 + 77968733 77968751 3.56e-11 4.07e-06 cacatcctcaagtagcttt
CACATCCTBHAGTARCTTT MEME-3 chr15 + 82310746 82310764 3.56e-11 4.07e-06 cacatcctcaagtagcttt
CACATCCTBHAGTARCTTT MEME-3 chr13 + 113921958 113921976 7.03e-11 6.71e-06 cacatcctcaagtaacttt
CACATCCTBHAGTARCTTT MEME-3 chr19 + 30079427 30079445 1.96e-10 1.6e-05 cacatcctccagtggcttt
CACATCCTBHAGTARCTTT MEME-3 chr4 + 3736496 3736514 3.01e-10 2.1e-05 cacatcctcaagtaacttc
CACATCCTBHAGTARCTTT MEME-3 chr16 + 87631277 87631295 3.4e-10 2.1e-05 cacatcctggagtagcttc
CACATCCTBHAGTARCTTT MEME-3 chr20 + 48807246 48807264 3.66e-10 2.1e-05 cacatcctgcagtatcttt
CACATCCTBHAGTARCTTT MEME-3 chr15 - 78784932 78784950 6.15e-10 3.2e-05 CACATCCTCAAGCAGCTTT
CACATCCTBHAGTARCTTT MEME-3 chr11 - 35868653 35868671 7.72e-10 3.68e-05 CATATCCTTCAGTAACTTT
CACATCCTBHAGTARCTTT MEME-3 chr1 + 2941256 2941274 1.01e-09 4.46e-05 cacatacttcagtagcttt
CACATCCTBHAGTARCTTT MEME-3 chr19 - 5116466 5116484 1.43e-09 5.84e-05 CACATCCTGCAGCAGCTTC
CACATCCTBHAGTARCTTT MEME-3 chr11 - 2829107 2829125 2.52e-09 9.63e-05 CACGTCCTCAAGTAACTTT
CACATCCTBHAGTARCTTT MEME-3 chr17 - 10077778 10077796 3.25e-09 0.000116 CACACCCTGCAGTAGCTTC
CACATCCTBHAGTARCTTT MEME-3 chr9 - 132103209 132103227 3.99e-09 0.00013 CACGTCCTCTAGTAGCTTC
CACATCCTBHAGTARCTTT MEME-3 chr7 - 5411649 5411667 4.08e-09 0.00013 CACATCCTGCGGTGGCTTT
CACATCCTBHAGTARCTTT MEME-3 chr2 - 200773258 200773276 4.7e-09 0.000142 TACATCCTGGAGTAGCCTT
CACATCCTBHAGTARCTTT MEME-3 chr3 + 16331792 16331810 6.94e-09 0.000199 cacatcctgtagtgactct
CACATCCTBHAGTARCTTT MEME-3 chr9 - 13648229 13648247 8.15e-09 0.000212 CACATTCTTTAGTAGTTTT
CACATCCTBHAGTARCTTT MEME-3 chr19 + 32781486 32781504 8.15e-09 0.000212 agcatcctttagtagcttt
CACATCCTBHAGTARCTTT MEME-3 chr14 + 105331821 105331839 9.68e-09 0.000241 CACATCCTTCAGaagctct
CACATCCTBHAGTARCTTT MEME-3 chr16 + 56574836 56574854 1.5e-08 0.000357 tacatcctcaagcaatttt
CACATCCTBHAGTARCTTT MEME-3 chr19 + 708002 708020 2.04e-08 0.000467 TACATCCTGCCGTATCTTT
CACATCCTBHAGTARCTTT MEME-3 chr17 + 78547230 78547248 4.45e-08 0.00098 tacatcctggaataggttt
CACATCCTBHAGTARCTTT MEME-3 chrX - 53371003 53371021 5.04e-08 0.00104 CACATCATCAAGTAAGTTT
CACATCCTBHAGTARCTTT MEME-3 chr17 + 4622588 4622606 5.2e-08 0.00104 cacatcctgcagtagccac
CACATCCTBHAGTARCTTT MEME-3 chr10 + 132905492 132905510 5.28e-08 0.00104 catatcctcaagaaacttt
CACATCCTBHAGTARCTTT MEME-3 chr3 - 52243556 52243574 6.46e-08 0.00123 TGCATCCTTCAACAACTTT
CACATCCTBHAGTARCTTT MEME-3 chr19 + 51314896 51314914 7.54e-08 0.00139 TGCATCCTTCCATAGCTTT
CACATCCTBHAGTARCTTT MEME-3 chr2 - 240814475 240814493 7.86e-08 0.00141 CACATCCTTGTGTGACTTC
CACATCCTBHAGTARCTTT MEME-3 chr2 + 241220160 241220178 9.49e-08 0.00165 tatatcctttagtaattct
CACATCCTBHAGTARCTTT MEME-3 chr1 + 53137964 53137982 1.03e-07 0.00174 catctcctttggtagcttt
CACATCCTBHAGTARCTTT MEME-3 chr15 + 70149866 70149884 1.24e-07 0.00203 cacatcctatggtaatttc
CACATCCTBHAGTARCTTT MEME-3 chr7 + 38965139 38965157 1.47e-07 0.00234 tacaccctttagtagccct
CACATCCTBHAGTARCTTT MEME-3 chr17 + 65236511 65236529 2.17e-07 0.00335 tgcatcctttagtgattct
CACATCCTBHAGTARCTTT MEME-3 chr7 + 157053329 157053347 2.42e-07 0.00365 caccaccttgagtaatttt
CACATCCTBHAGTARCTTT MEME-3 chr17 - 2974474 2974492 3.03e-07 0.00445 TGTATCCTTCAGTAATTCT
CACATCCTBHAGTARCTTT MEME-3 chr17 + 59777225 59777243 3.24e-07 0.00463 catattctgctgtagcttt
CACATCCTBHAGTARCTTT MEME-3 chr10 + 21830252 21830270 3.85e-07 0.00537 cacatccttaagtagactt
CACATCCTBHAGTARCTTT MEME-3 chr17 + 7750473 7750491 5.31e-07 0.00724 tgtatccattagtagcttc
CACATCCTBHAGTARCTTT MEME-3 chr15 + 77968484 77968502 9.21e-07 0.012 cagatcctttaatagtttt
CACATCCTBHAGTARCTTT MEME-3 chr15 - 78785182 78785200 9.21e-07 0.012 CAGATCCTTTAATAGTTTT
CACATCCTBHAGTARCTTT MEME-3 chr5 - 36816334 36816352 1.92e-06 0.0244 TGTGTCCTTTAATAGTTTT
CACATCCTBHAGTARCTTT MEME-3 chr2 - 240814588 240814606 2.27e-06 0.0282 CACCTCCAGAAGTGGCCTC
CACATCCTBHAGTARCTTT MEME-3 chr1 + 225443151 225443169 2.5e-06 0.0304 TATATCCTGGAATGACTAT
CACATCCTBHAGTARCTTT MEME-3 chr21 - 34544032 34544050 2.86e-06 0.0341 CACATTCTACAACAACCTT
CACATCCTBHAGTARCTTT MEME-3 chr15 + 82310501 82310519 3.3e-06 0.0385 cagatcctttaacagtttt
CACATCCTBHAGTARCTTT MEME-3 chr2 - 232473483 232473501 3.74e-06 0.0428 TGCATTCTTGAGTGGCCCT
CACATCCTBHAGTARCTTT MEME-3 chr11 + 9219254 9219272 3.89e-06 0.0436 cacgtcatgatgtaatttc
CACATCCTBHAGTARCTTT MEME-3 chr7 + 32937837 32937855 4.22e-06 0.0464 cataacattcagtggcctt
CACATCCTBHAGTARCTTT MEME-3 chr10 + 15813531 15813549 5e-06 0.054 tatatccttgagtaactca
CACATCCTBHAGTARCTTT MEME-3 chr22 - 43582554 43582572 6.64e-06 0.0703 TACTTCCTGAAGTAATCTC
CACATCCTBHAGTARCTTT MEME-3 chr21 - 31559773 31559791 7.91e-06 0.0823 AACATCCTCTAGCATCCAC
CACATCCTBHAGTARCTTT MEME-3 chr13 + 113921717 113921735 9.93e-06 0.102 CACATTCTCATGTGTGTTC
CACATCCTBHAGTARCTTT MEME-3 chr16 - 965640 965658 1.13e-05 0.11 TGTATCCCCAAGCAGCTTT
CACATCCTBHAGTARCTTT MEME-3 chr17 - 29293806 29293824 1.13e-05 0.11 CACACCCTCCAGCAGCACC
CACATCCTBHAGTARCTTT MEME-3 chr5 + 110054421 110054439 1.13e-05 0.11 CACATCCTCCTGATGTTTT
CACATCCTBHAGTARCTTT MEME-3 chr5 + 173328355 173328373 1.18e-05 0.113 AGCGCCCTCCCGTAGCTCT
CACATCCTBHAGTARCTTT MEME-3 chr7 - 102572403 102572421 1.6e-05 0.15 CGCATTCTGGGGTGTCTCC
CACATCCTBHAGTARCTTT MEME-3 chr6 + 139374300 139374318 1.67e-05 0.154 CACATCCTGTTGTTATTCC
CACATCCTBHAGTARCTTT MEME-3 chr8 + 37494718 37494736 1.71e-05 0.155 CGCATCCTAAAGTAGACCT
CACATCCTBHAGTARCTTT MEME-3 chr1 - 167926859 167926877 1.9e-05 0.17 TGCAACCTGAGATGAGTTT
CACATCCTBHAGTARCTTT MEME-3 chr13 + 37047128 37047146 1.94e-05 0.171 CATGCTCTGTAATAGCTCT
CACATCCTBHAGTARCTTT MEME-3 chr19 + 51315062 51315080 2.05e-05 0.178 TACATCCATAAATATTCAT
CACATCCTBHAGTARCTTT MEME-3 chr1 + 24043601 24043619 2.09e-05 0.178 tgcaatctaaagcagctct
CACATCCTBHAGTARCTTT MEME-3 chr14 + 24425850 24425868 2.27e-05 0.191 AATATACTCAAATAGTTCC
CACATCCTBHAGTARCTTT MEME-3 chr17 - 8154361 8154379 2.36e-05 0.195 CACATTCCGAGGCAGCTTC
CACATCCTBHAGTARCTTT MEME-3 chrX - 73944119 73944137 2.52e-05 0.206 CACTTCCTCTCACAGCCTT
CACATCCTBHAGTARCTTT MEME-3 chr15 - 69143931 69143949 2.92e-05 0.235 TATGACCTTCAGTAATCCC
CACATCCTBHAGTARCTTT MEME-3 chr5 + 173275005 173275023 3.11e-05 0.245 actgtccttcagtaatttt
CACATCCTBHAGTARCTTT MEME-3 chr19 + 37506835 37506853 3.12e-05 0.245 TACCTCCAATTACAGCTTT
CACATCCTBHAGTARCTTT MEME-3 chr21 - 38986285 38986303 3.24e-05 0.248 CACCTCCTCCAGGAAGCCT
CACATCCTBHAGTARCTTT MEME-3 chr12 - 1924781 1924799 3.25e-05 0.248 CACACCCTCTAACAAGTTA
CACATCCTBHAGTARCTTT MEME-3 chr12 - 53995915 53995933 3.53e-05 0.262 CACACCCACACACAACTCC
CACATCCTBHAGTARCTTT MEME-3 chr1 - 221284171 221284189 3.53e-05 0.262 CACATCACACAGCAGTTTC
CACATCCTBHAGTARCTTT MEME-3 chr6 - 4692825 4692843 3.59e-05 0.263 TGCATACTTGAGTAGTGCT
CACATCCTBHAGTARCTTT MEME-3 chr11 + 46346895 46346913 3.69e-05 0.266 CGAGTCATTAAGTGACTTT
CACATCCTBHAGTARCTTT MEME-3 chr22 - 43582692 43582710 3.72e-05 0.266 CACCCCCTGCCACATTTTC
CACATCCTBHAGTARCTTT MEME-3 chrX + 2475364 2475382 3.8e-05 0.268 TACACACTGAAGAGGTTCC
CACATCCTBHAGTARCTTT MEME-3 chr5 - 41747662 41747680 3.88e-05 0.271 CATGTTCTTTTGAGACTTT
CACATCCTBHAGTARCTTT MEME-3 chr5 - 134467073 134467091 3.97e-05 0.274 AGTGTCCTTGAGTATCCCT
CACATCCTBHAGTARCTTT MEME-3 chr12 + 47949565 47949583 4.06e-05 0.275 TGGATCCTCTTGTGGGTTT
CACATCCTBHAGTARCTTT MEME-3 chr17 - 19063711 19063729 4.12e-05 0.275 CACCTCCTATTGTCTCTTT
CACATCCTBHAGTARCTTT MEME-3 chr5 + 137888962 137888980 4.13e-05 0.275 TACTTCCAGCAACAGCTCT
CACATCCTBHAGTARCTTT MEME-3 chr21 - 36567406 36567424 4.35e-05 0.286 AGCATTCTTCAGCATCCAT
CACATCCTBHAGTARCTTT MEME-3 chr2 + 10122183 10122201 4.58e-05 0.298 CGCACCCAGGAGCGTTTTC
CACATCCTBHAGTARCTTT MEME-3 chr1 + 9202181 9202199 4.71e-05 0.303 AACCTCCACCAAAATCTTC
CACATCCTBHAGTARCTTT MEME-3 chr12 + 124914667 124914685 4.89e-05 0.311 CGCGTCCTTATATAATCAT
CACATCCTBHAGTARCTTT MEME-3 chr6 - 4692912 4692930 5.08e-05 0.317 ATCACCCTAGAGTATCTTT
CACATCCTBHAGTARCTTT MEME-3 chr12 - 56150880 56150898 5.1e-05 0.317 TACATTTTTAAGTGGTTAT
CACATCCTBHAGTARCTTT MEME-3 chr10 + 72272493 72272511 5.44e-05 0.335 TGTCTCCATAAGTGGGTCT
CACATCCTBHAGTARCTTT MEME-3 chr1 + 21346733 21346751 5.53e-05 0.337 TGTCTCCACGTGTAGGTTT
CACATCCTBHAGTARCTTT MEME-3 chr17 - 7718082 7718100 5.65e-05 0.338 TAAATCCAGCAGTATTTAT
CACATCCTBHAGTARCTTT MEME-3 chr11 - 9219249 9219267 5.67e-05 0.338 TACATCATGACGTGTCTTG
CACATCCTBHAGTARCTTT MEME-3 chr19 - 35510457 35510475 5.82e-05 0.343 CAAATCATTGCGTAGTTCC
CACATCCTBHAGTARCTTT MEME-3 chr14 + 34540170 34540188 6.02e-05 0.352 CATTTTCTTCCGCAGCTTC
CACATCCTBHAGTARCTTT MEME-3 chr12 + 122526880 122526898 6.1e-05 0.352 CGCCTCCACTTGTCGCTTT
CACATCCTBHAGTARCTTT MEME-3 chr17 - 45148515 45148533 6.14e-05 0.352 CGCGTCCTCCCCCGACTTT
CACATCCTBHAGTARCTTT MEME-3 chr21 + 44939843 44939861 6.25e-05 0.354 CGCGTCCTCCGGTCTGTTT
CACATCCTBHAGTARCTTT MEME-3 chrX - 2475375 2475393 6.44e-05 0.357 CGCATTCTTAGGGAACCTC
CACATCCTBHAGTARCTTT MEME-3 chr16 - 11520982 11521000 6.5e-05 0.357 TGTGTTCTGTTGCAGTTTT
CACATCCTBHAGTARCTTT MEME-3 chr19 - 39126014 39126032 6.52e-05 0.357 TCCCTCCACCAGTGACCTT
CACATCCTBHAGTARCTTT MEME-3 chr12 + 57112112 57112130 6.66e-05 0.357 CACACACATGCACAACTTC
CACATCCTBHAGTARCTTT MEME-3 chr19 + 39824010 39824028 6.68e-05 0.357 AAAATCCTCCCATGGCTCT
CACATCCTBHAGTARCTTT MEME-3 chr3 - 156171932 156171950 6.68e-05 0.357 CACAGCCTCAAATATATTT
CACATCCTBHAGTARCTTT MEME-3 chr6 - 27213482 27213500 6.75e-05 0.357 AATATCATCCTGTGTGTTT
CACATCCTBHAGTARCTTT MEME-3 chr19 + 43902193 43902211 6.79e-05 0.357 cagcacctatagtagctcc
CACATCCTBHAGTARCTTT MEME-3 chr14 + 95292028 95292046 7.07e-05 0.368 cacgtcctcatctggcctc
CACATCCTBHAGTARCTTT MEME-3 chrX - 24151393 24151411 7.19e-05 0.371 CCCATCCCTCGGTAACCTT
CACATCCTBHAGTARCTTT MEME-3 chr14 + 24426085 24426103 7.45e-05 0.379 CACACTTTATAGTGACTTC
CACATCCTBHAGTARCTTT MEME-3 chr1 + 24043493 24043511 7.48e-05 0.379 ctctccctgcagtatcttt
CACATCCTBHAGTARCTTT MEME-3 chr13 - 113921791 113921809 7.55e-05 0.379 CTCATCCTGAGGAGACCTC
CACATCCTBHAGTARCTTT MEME-3 chr11 - 65499313 65499331 7.63e-05 0.379 TACTCCATGAAGAAGCTTC
CACATCCTBHAGTARCTTT MEME-3 chr12 - 121404857 121404875 8.14e-05 0.402 TGTATAATCTAATATGTTT
CACATCCTBHAGTARCTTT MEME-3 chr1 - 155325162 155325180 8.31e-05 0.403 CACCTTCTGCACCAAGTTC
CACATCCTBHAGTARCTTT MEME-3 chr5 - 109469115 109469133 8.33e-05 0.403 TATGTACTCTGATATTTTC
CACATCCTBHAGTARCTTT MEME-3 chr19 + 39436703 39436721 8.39e-05 0.403 TCCCTCCTCCAGAATCTCC
CACATCCTBHAGTARCTTT MEME-3 chr10 - 121497648 121497666 8.44e-05 0.403 TATACCATGGAGAAATTAT
CACATCCTBHAGTARCTTT MEME-3 chrUn_KI270467v1 + 2163 2181 8.52e-05 0.403 tatatatttgggcaacttt
CACATCCTBHAGTARCTTT MEME-3 chr20 + 57435738 57435756 8.78e-05 0.41 AGCAACATGAGGCAACCTT
CACATCCTBHAGTARCTTT MEME-3 chr2 - 38751010 38751028 8.83e-05 0.41 CGTACTCTTGGGCATTTTT
CACATCCTBHAGTARCTTT MEME-3 chr14 + 70359674 70359692 8.89e-05 0.41 TACGTCCTTAACTCACTTC
CACATCCTBHAGTARCTTT MEME-3 chr21 - 29299777 29299795 9.22e-05 0.422 CACGTTCTTTCACAATTAC
CACATCCTBHAGTARCTTT MEME-3 chr1 - 204516495 204516513 9.4e-05 0.427 CACACCTTACGGCAGCTCC
CACATCCTBHAGTARCTTT MEME-3 chr1 + 16112050 16112068 9.49e-05 0.427 cacacacTCTCATATGCTC
CACATCCTBHAGTARCTTT MEME-3 chr12 + 57245359 57245377 9.55e-05 0.427 tgcctaatgcaggaACttt
CACATCCTBHAGTARCTTT MEME-3 chr17 + 38881539 38881557 9.77e-05 0.431 CTTATCCTTGAGTGACATT
CACATCCTBHAGTARCTTT MEME-3 chr21 - 37879022 37879040 9.8e-05 0.431 CATCTCCTTTACAAACCTC

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif CACATCCTBHAGTARCTTT /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_3 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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