Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CYTGGCACVRTGCCAR | 16 | CTTGGCACAGTGCCAG |
BTKTBTKTGTKTRTKTBTKTGTKTKKB | 27 | GTTTGTTTGTTTGTTTGTTTGTTTTTG |
CACATCCTBHAGTARCTTT | 19 | CACATCCTTCAGTAGCTTT |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.237 C 0.263 G 0.263 T 0.237
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
CACATCCTBHAGTARCTTT | MEME-3 | chr4 | + | 5715581 | 5715599 | 3.03e-12 | 1.74e-06 | cacatccttcagtagcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 1771343 | 1771361 | 6.4e-12 | 1.83e-06 | cacatcctccagtagcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr21 | - | 44609386 | 44609404 | 2.71e-11 | 4.07e-06 | CACATCCTCCAGTAACTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr15 | + | 77968733 | 77968751 | 3.56e-11 | 4.07e-06 | cacatcctcaagtagcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr15 | + | 82310746 | 82310764 | 3.56e-11 | 4.07e-06 | cacatcctcaagtagcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr13 | + | 113921958 | 113921976 | 7.03e-11 | 6.71e-06 | cacatcctcaagtaacttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 30079427 | 30079445 | 1.96e-10 | 1.6e-05 | cacatcctccagtggcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr4 | + | 3736496 | 3736514 | 3.01e-10 | 2.1e-05 | cacatcctcaagtaacttc |
CACATCCTBHAGTARCTTT | MEME-3 | chr16 | + | 87631277 | 87631295 | 3.4e-10 | 2.1e-05 | cacatcctggagtagcttc |
CACATCCTBHAGTARCTTT | MEME-3 | chr20 | + | 48807246 | 48807264 | 3.66e-10 | 2.1e-05 | cacatcctgcagtatcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr15 | - | 78784932 | 78784950 | 6.15e-10 | 3.2e-05 | CACATCCTCAAGCAGCTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr11 | - | 35868653 | 35868671 | 7.72e-10 | 3.68e-05 | CATATCCTTCAGTAACTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | + | 2941256 | 2941274 | 1.01e-09 | 4.46e-05 | cacatacttcagtagcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | - | 5116466 | 5116484 | 1.43e-09 | 5.84e-05 | CACATCCTGCAGCAGCTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr11 | - | 2829107 | 2829125 | 2.52e-09 | 9.63e-05 | CACGTCCTCAAGTAACTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | - | 10077778 | 10077796 | 3.25e-09 | 0.000116 | CACACCCTGCAGTAGCTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr9 | - | 132103209 | 132103227 | 3.99e-09 | 0.00013 | CACGTCCTCTAGTAGCTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr7 | - | 5411649 | 5411667 | 4.08e-09 | 0.00013 | CACATCCTGCGGTGGCTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr2 | - | 200773258 | 200773276 | 4.7e-09 | 0.000142 | TACATCCTGGAGTAGCCTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr3 | + | 16331792 | 16331810 | 6.94e-09 | 0.000199 | cacatcctgtagtgactct |
CACATCCTBHAGTARCTTT | MEME-3 | chr9 | - | 13648229 | 13648247 | 8.15e-09 | 0.000212 | CACATTCTTTAGTAGTTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 32781486 | 32781504 | 8.15e-09 | 0.000212 | agcatcctttagtagcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr14 | + | 105331821 | 105331839 | 9.68e-09 | 0.000241 | CACATCCTTCAGaagctct |
CACATCCTBHAGTARCTTT | MEME-3 | chr16 | + | 56574836 | 56574854 | 1.5e-08 | 0.000357 | tacatcctcaagcaatttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 708002 | 708020 | 2.04e-08 | 0.000467 | TACATCCTGCCGTATCTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | + | 78547230 | 78547248 | 4.45e-08 | 0.00098 | tacatcctggaataggttt |
CACATCCTBHAGTARCTTT | MEME-3 | chrX | - | 53371003 | 53371021 | 5.04e-08 | 0.00104 | CACATCATCAAGTAAGTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | + | 4622588 | 4622606 | 5.2e-08 | 0.00104 | cacatcctgcagtagccac |
CACATCCTBHAGTARCTTT | MEME-3 | chr10 | + | 132905492 | 132905510 | 5.28e-08 | 0.00104 | catatcctcaagaaacttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr3 | - | 52243556 | 52243574 | 6.46e-08 | 0.00123 | TGCATCCTTCAACAACTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 51314896 | 51314914 | 7.54e-08 | 0.00139 | TGCATCCTTCCATAGCTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr2 | - | 240814475 | 240814493 | 7.86e-08 | 0.00141 | CACATCCTTGTGTGACTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr2 | + | 241220160 | 241220178 | 9.49e-08 | 0.00165 | tatatcctttagtaattct |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | + | 53137964 | 53137982 | 1.03e-07 | 0.00174 | catctcctttggtagcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr15 | + | 70149866 | 70149884 | 1.24e-07 | 0.00203 | cacatcctatggtaatttc |
CACATCCTBHAGTARCTTT | MEME-3 | chr7 | + | 38965139 | 38965157 | 1.47e-07 | 0.00234 | tacaccctttagtagccct |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | + | 65236511 | 65236529 | 2.17e-07 | 0.00335 | tgcatcctttagtgattct |
CACATCCTBHAGTARCTTT | MEME-3 | chr7 | + | 157053329 | 157053347 | 2.42e-07 | 0.00365 | caccaccttgagtaatttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | - | 2974474 | 2974492 | 3.03e-07 | 0.00445 | TGTATCCTTCAGTAATTCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | + | 59777225 | 59777243 | 3.24e-07 | 0.00463 | catattctgctgtagcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr10 | + | 21830252 | 21830270 | 3.85e-07 | 0.00537 | cacatccttaagtagactt |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | + | 7750473 | 7750491 | 5.31e-07 | 0.00724 | tgtatccattagtagcttc |
CACATCCTBHAGTARCTTT | MEME-3 | chr15 | + | 77968484 | 77968502 | 9.21e-07 | 0.012 | cagatcctttaatagtttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr15 | - | 78785182 | 78785200 | 9.21e-07 | 0.012 | CAGATCCTTTAATAGTTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr5 | - | 36816334 | 36816352 | 1.92e-06 | 0.0244 | TGTGTCCTTTAATAGTTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr2 | - | 240814588 | 240814606 | 2.27e-06 | 0.0282 | CACCTCCAGAAGTGGCCTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | + | 225443151 | 225443169 | 2.5e-06 | 0.0304 | TATATCCTGGAATGACTAT |
CACATCCTBHAGTARCTTT | MEME-3 | chr21 | - | 34544032 | 34544050 | 2.86e-06 | 0.0341 | CACATTCTACAACAACCTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr15 | + | 82310501 | 82310519 | 3.3e-06 | 0.0385 | cagatcctttaacagtttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr2 | - | 232473483 | 232473501 | 3.74e-06 | 0.0428 | TGCATTCTTGAGTGGCCCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr11 | + | 9219254 | 9219272 | 3.89e-06 | 0.0436 | cacgtcatgatgtaatttc |
CACATCCTBHAGTARCTTT | MEME-3 | chr7 | + | 32937837 | 32937855 | 4.22e-06 | 0.0464 | cataacattcagtggcctt |
CACATCCTBHAGTARCTTT | MEME-3 | chr10 | + | 15813531 | 15813549 | 5e-06 | 0.054 | tatatccttgagtaactca |
CACATCCTBHAGTARCTTT | MEME-3 | chr22 | - | 43582554 | 43582572 | 6.64e-06 | 0.0703 | TACTTCCTGAAGTAATCTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr21 | - | 31559773 | 31559791 | 7.91e-06 | 0.0823 | AACATCCTCTAGCATCCAC |
CACATCCTBHAGTARCTTT | MEME-3 | chr13 | + | 113921717 | 113921735 | 9.93e-06 | 0.102 | CACATTCTCATGTGTGTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr16 | - | 965640 | 965658 | 1.13e-05 | 0.11 | TGTATCCCCAAGCAGCTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | - | 29293806 | 29293824 | 1.13e-05 | 0.11 | CACACCCTCCAGCAGCACC |
CACATCCTBHAGTARCTTT | MEME-3 | chr5 | + | 110054421 | 110054439 | 1.13e-05 | 0.11 | CACATCCTCCTGATGTTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr5 | + | 173328355 | 173328373 | 1.18e-05 | 0.113 | AGCGCCCTCCCGTAGCTCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr7 | - | 102572403 | 102572421 | 1.6e-05 | 0.15 | CGCATTCTGGGGTGTCTCC |
CACATCCTBHAGTARCTTT | MEME-3 | chr6 | + | 139374300 | 139374318 | 1.67e-05 | 0.154 | CACATCCTGTTGTTATTCC |
CACATCCTBHAGTARCTTT | MEME-3 | chr8 | + | 37494718 | 37494736 | 1.71e-05 | 0.155 | CGCATCCTAAAGTAGACCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | - | 167926859 | 167926877 | 1.9e-05 | 0.17 | TGCAACCTGAGATGAGTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr13 | + | 37047128 | 37047146 | 1.94e-05 | 0.171 | CATGCTCTGTAATAGCTCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 51315062 | 51315080 | 2.05e-05 | 0.178 | TACATCCATAAATATTCAT |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | + | 24043601 | 24043619 | 2.09e-05 | 0.178 | tgcaatctaaagcagctct |
CACATCCTBHAGTARCTTT | MEME-3 | chr14 | + | 24425850 | 24425868 | 2.27e-05 | 0.191 | AATATACTCAAATAGTTCC |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | - | 8154361 | 8154379 | 2.36e-05 | 0.195 | CACATTCCGAGGCAGCTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chrX | - | 73944119 | 73944137 | 2.52e-05 | 0.206 | CACTTCCTCTCACAGCCTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr15 | - | 69143931 | 69143949 | 2.92e-05 | 0.235 | TATGACCTTCAGTAATCCC |
CACATCCTBHAGTARCTTT | MEME-3 | chr5 | + | 173275005 | 173275023 | 3.11e-05 | 0.245 | actgtccttcagtaatttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 37506835 | 37506853 | 3.12e-05 | 0.245 | TACCTCCAATTACAGCTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr21 | - | 38986285 | 38986303 | 3.24e-05 | 0.248 | CACCTCCTCCAGGAAGCCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr12 | - | 1924781 | 1924799 | 3.25e-05 | 0.248 | CACACCCTCTAACAAGTTA |
CACATCCTBHAGTARCTTT | MEME-3 | chr12 | - | 53995915 | 53995933 | 3.53e-05 | 0.262 | CACACCCACACACAACTCC |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | - | 221284171 | 221284189 | 3.53e-05 | 0.262 | CACATCACACAGCAGTTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr6 | - | 4692825 | 4692843 | 3.59e-05 | 0.263 | TGCATACTTGAGTAGTGCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr11 | + | 46346895 | 46346913 | 3.69e-05 | 0.266 | CGAGTCATTAAGTGACTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr22 | - | 43582692 | 43582710 | 3.72e-05 | 0.266 | CACCCCCTGCCACATTTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chrX | + | 2475364 | 2475382 | 3.8e-05 | 0.268 | TACACACTGAAGAGGTTCC |
CACATCCTBHAGTARCTTT | MEME-3 | chr5 | - | 41747662 | 41747680 | 3.88e-05 | 0.271 | CATGTTCTTTTGAGACTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr5 | - | 134467073 | 134467091 | 3.97e-05 | 0.274 | AGTGTCCTTGAGTATCCCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr12 | + | 47949565 | 47949583 | 4.06e-05 | 0.275 | TGGATCCTCTTGTGGGTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | - | 19063711 | 19063729 | 4.12e-05 | 0.275 | CACCTCCTATTGTCTCTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr5 | + | 137888962 | 137888980 | 4.13e-05 | 0.275 | TACTTCCAGCAACAGCTCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr21 | - | 36567406 | 36567424 | 4.35e-05 | 0.286 | AGCATTCTTCAGCATCCAT |
CACATCCTBHAGTARCTTT | MEME-3 | chr2 | + | 10122183 | 10122201 | 4.58e-05 | 0.298 | CGCACCCAGGAGCGTTTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | + | 9202181 | 9202199 | 4.71e-05 | 0.303 | AACCTCCACCAAAATCTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr12 | + | 124914667 | 124914685 | 4.89e-05 | 0.311 | CGCGTCCTTATATAATCAT |
CACATCCTBHAGTARCTTT | MEME-3 | chr6 | - | 4692912 | 4692930 | 5.08e-05 | 0.317 | ATCACCCTAGAGTATCTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr12 | - | 56150880 | 56150898 | 5.1e-05 | 0.317 | TACATTTTTAAGTGGTTAT |
CACATCCTBHAGTARCTTT | MEME-3 | chr10 | + | 72272493 | 72272511 | 5.44e-05 | 0.335 | TGTCTCCATAAGTGGGTCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | + | 21346733 | 21346751 | 5.53e-05 | 0.337 | TGTCTCCACGTGTAGGTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | - | 7718082 | 7718100 | 5.65e-05 | 0.338 | TAAATCCAGCAGTATTTAT |
CACATCCTBHAGTARCTTT | MEME-3 | chr11 | - | 9219249 | 9219267 | 5.67e-05 | 0.338 | TACATCATGACGTGTCTTG |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | - | 35510457 | 35510475 | 5.82e-05 | 0.343 | CAAATCATTGCGTAGTTCC |
CACATCCTBHAGTARCTTT | MEME-3 | chr14 | + | 34540170 | 34540188 | 6.02e-05 | 0.352 | CATTTTCTTCCGCAGCTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr12 | + | 122526880 | 122526898 | 6.1e-05 | 0.352 | CGCCTCCACTTGTCGCTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | - | 45148515 | 45148533 | 6.14e-05 | 0.352 | CGCGTCCTCCCCCGACTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr21 | + | 44939843 | 44939861 | 6.25e-05 | 0.354 | CGCGTCCTCCGGTCTGTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chrX | - | 2475375 | 2475393 | 6.44e-05 | 0.357 | CGCATTCTTAGGGAACCTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr16 | - | 11520982 | 11521000 | 6.5e-05 | 0.357 | TGTGTTCTGTTGCAGTTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | - | 39126014 | 39126032 | 6.52e-05 | 0.357 | TCCCTCCACCAGTGACCTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr12 | + | 57112112 | 57112130 | 6.66e-05 | 0.357 | CACACACATGCACAACTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 39824010 | 39824028 | 6.68e-05 | 0.357 | AAAATCCTCCCATGGCTCT |
CACATCCTBHAGTARCTTT | MEME-3 | chr3 | - | 156171932 | 156171950 | 6.68e-05 | 0.357 | CACAGCCTCAAATATATTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr6 | - | 27213482 | 27213500 | 6.75e-05 | 0.357 | AATATCATCCTGTGTGTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 43902193 | 43902211 | 6.79e-05 | 0.357 | cagcacctatagtagctcc |
CACATCCTBHAGTARCTTT | MEME-3 | chr14 | + | 95292028 | 95292046 | 7.07e-05 | 0.368 | cacgtcctcatctggcctc |
CACATCCTBHAGTARCTTT | MEME-3 | chrX | - | 24151393 | 24151411 | 7.19e-05 | 0.371 | CCCATCCCTCGGTAACCTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr14 | + | 24426085 | 24426103 | 7.45e-05 | 0.379 | CACACTTTATAGTGACTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | + | 24043493 | 24043511 | 7.48e-05 | 0.379 | ctctccctgcagtatcttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr13 | - | 113921791 | 113921809 | 7.55e-05 | 0.379 | CTCATCCTGAGGAGACCTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr11 | - | 65499313 | 65499331 | 7.63e-05 | 0.379 | TACTCCATGAAGAAGCTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr12 | - | 121404857 | 121404875 | 8.14e-05 | 0.402 | TGTATAATCTAATATGTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | - | 155325162 | 155325180 | 8.31e-05 | 0.403 | CACCTTCTGCACCAAGTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr5 | - | 109469115 | 109469133 | 8.33e-05 | 0.403 | TATGTACTCTGATATTTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr19 | + | 39436703 | 39436721 | 8.39e-05 | 0.403 | TCCCTCCTCCAGAATCTCC |
CACATCCTBHAGTARCTTT | MEME-3 | chr10 | - | 121497648 | 121497666 | 8.44e-05 | 0.403 | TATACCATGGAGAAATTAT |
CACATCCTBHAGTARCTTT | MEME-3 | chrUn_KI270467v1 | + | 2163 | 2181 | 8.52e-05 | 0.403 | tatatatttgggcaacttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr20 | + | 57435738 | 57435756 | 8.78e-05 | 0.41 | AGCAACATGAGGCAACCTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr2 | - | 38751010 | 38751028 | 8.83e-05 | 0.41 | CGTACTCTTGGGCATTTTT |
CACATCCTBHAGTARCTTT | MEME-3 | chr14 | + | 70359674 | 70359692 | 8.89e-05 | 0.41 | TACGTCCTTAACTCACTTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr21 | - | 29299777 | 29299795 | 9.22e-05 | 0.422 | CACGTTCTTTCACAATTAC |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | - | 204516495 | 204516513 | 9.4e-05 | 0.427 | CACACCTTACGGCAGCTCC |
CACATCCTBHAGTARCTTT | MEME-3 | chr1 | + | 16112050 | 16112068 | 9.49e-05 | 0.427 | cacacacTCTCATATGCTC |
CACATCCTBHAGTARCTTT | MEME-3 | chr12 | + | 57245359 | 57245377 | 9.55e-05 | 0.427 | tgcctaatgcaggaACttt |
CACATCCTBHAGTARCTTT | MEME-3 | chr17 | + | 38881539 | 38881557 | 9.77e-05 | 0.431 | CTTATCCTTGAGTGACATT |
CACATCCTBHAGTARCTTT | MEME-3 | chr21 | - | 37879022 | 37879040 | 9.8e-05 | 0.431 | CATCTCCTTTACAAACCTC |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif CACATCCTBHAGTARCTTT /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_3 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.