******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr21:36567189-36567689 1.0000 100 chr12:27710753-27711253 1.0000 100 chr12:12266900-12267400 1.0000 100 chr3:169762960-169763460 1.0000 100 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chr3:52243319-52243819 1.0000 100 chr11:62841260-62841760 1.0000 100 chr1:63523024-63523524 1.0000 100 chr13:113449100-11344960 1.0000 100 chr1:44213161-44213661 1.0000 100 chr1:28581483-28581983 1.0000 100 chr14:69716067-69716567 1.0000 100 chr15:77968455-77968955 1.0000 100 chr7:104884054-104884554 1.0000 100 chr5:41747188-41747688 1.0000 100 chr19:37655843-37656343 1.0000 100 chr5:77644668-77645168 1.0000 100 chr1:223731385-223731885 1.0000 100 chr2:200773039-200773539 1.0000 100 chr6:4018190-4018690 1.0000 100 chr6:27495588-27496088 1.0000 100 chr3:128490253-128490753 1.0000 100 chr2:38751006-38751506 1.0000 100 chr19:44207424-44207924 1.0000 100 chr1:45875938-45876438 1.0000 100 chr11:120346978-12034747 1.0000 100 chr1:37989832-37990332 1.0000 100 chr17:38881491-38881991 1.0000 100 chr1:109484009-109484509 1.0000 100 chr1:78620128-78620628 1.0000 100 chr12:121404697-12140519 1.0000 100 chrX:41333479-41333979 1.0000 100 chr2:165825014-165825514 1.0000 100 chr21:43771286-43771786 1.0000 100 chr17:29293731-29294231 1.0000 100 chr17:8186257-8186757 1.0000 100 chr19:41310180-41310680 1.0000 100 chr10:132905209-13290570 1.0000 100 chr6:4692593-4693093 1.0000 100 chr19:49848996-49849496 1.0000 100 chr17:59776943-59777443 1.0000 100 chr1:40257934-40258434 1.0000 100 chr13:112849452-11284995 1.0000 100 chr5:81736016-81736516 1.0000 100 chr20:46255378-46255878 1.0000 100 chr19:30079163-30079663 1.0000 100 chr11:2828880-2829380 1.0000 100 chr20:57435541-57436041 1.0000 100 chr19:36837963-36838463 1.0000 100 chrX:53370803-53371303 1.0000 100 chr14:105331573-10533207 1.0000 100 chr15:89383541-89384041 1.0000 100 chr13:113921716-11392221 1.0000 100 chr10:87586165-87586665 1.0000 100 chr1:28648549-28649049 1.0000 100 chr17:58631367-58631867 1.0000 100 chr17:43367557-43368057 1.0000 100 chr17:4622337-4622837 1.0000 100 chr17:2974278-2974778 1.0000 100 chr19:5116254-5116754 1.0000 100 chr11:35868455-35868955 1.0000 100 chr5:10601222-10601722 1.0000 100 chr1:234977849-234978349 1.0000 100 chr1:146376839-146377339 1.0000 100 chrUn_KI270467v1:3150-36 1.0000 100 chr6:41449686-41450186 1.0000 100 chr17:7484246-7484746 1.0000 100 chr19:707751-708251 1.0000 100 chr19:45531345-45531845 1.0000 100 chr4:5715326-5715826 1.0000 100 chr16:965417-965917 1.0000 100 chr16:25257951-25258451 1.0000 100 chr12:120091304-12009180 1.0000 100 chr1:229221425-229221925 1.0000 100 chr17:45148366-45148866 1.0000 100 chr11:59550360-59550860 1.0000 100 chr16:87631023-87631523 1.0000 100 chr19:32781232-32781732 1.0000 100 chr19:1771079-1771579 1.0000 100 chr1:226050082-226050582 1.0000 100 chr17:26603654-26604154 1.0000 100 chr19:50224943-50225443 1.0000 100 chrUn_KI270466v1:168-668 1.0000 100 chrUn_KI270467v1:2038-25 1.0000 100 chr6:157649772-157650272 1.0000 100 chrUn_KI270467v1:2951-34 1.0000 100 chr1:53137709-53138209 1.0000 100 chr17:7750228-7750728 1.0000 100 chr16:1271755-1272255 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.237 C 0.263 G 0.263 T 0.237 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.237 C 0.263 G 0.263 T 0.237 ******************************************************************************** ******************************************************************************** MOTIF CYTGGCACVRTGCCAR MEME-1 width = 16 sites = 109 llr = 1541 E-value = 6.5e-258 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYTGGCACVRTGCCAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::::62322:::a4 pos.-specific C 83:::a1532::aa:: probability G 1::aa::1241a:::6 matrix T 16a:::21117::::: bits 2.1 * * 1.9 *** **** 1.7 **** **** 1.5 **** **** Relative 1.2 **** **** Entropy 1.0 ****** ***** (20.4 bits) 0.8 ****** ****** 0.6 ******* ****** 0.4 ******* ****** 0.2 ******** ******* 0.0 ---------------- Multilevel CTTGGCACAGTGCCAG consensus C T CA A sequence GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACVRTGCCAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr1:181127021-181127521 - 59 2.81e-10 GTCTAGGCTG CTTGGCACAGTGCCAG GTGCTCCATA chr14:24425684-24426184 + 2 2.81e-10 T CTTGGCACAGTGCCAG ATCTTCTTGG chr14:95291773-95292273 - 26 2.81e-10 CACGTCAACC CTTGGCACAGTGCCAG GAACACAGTC chr2:63064157-63064657 + 37 2.81e-10 agtcttaggc cttggcacagtgccag acacaaggta chr2:165825014-165825514 + 38 8.45e-10 ttgattgtgg cttggcacagtgccaa actcaaggtt chr5:41747188-41747688 - 46 8.45e-10 TTATCTAACA CTTGGCACAGTGCCAA CCCATACTCA chr12:120646972-12064747 + 52 8.45e-10 tttctagatg cttggcacagtgccaa gccctttgca chr12:120091304-12009180 + 35 2.56e-09 TTGGCAAATA CCTGGCACAGTGCCAG CTCTGAGGGG chr6:41449686-41450186 - 49 2.56e-09 AACCTCTGTG CCTGGCACAGTGCCAG GTGTGTGATA chr5:177404063-177404563 - 63 2.56e-09 AGTACTGCGA CCTGGCACAGTGCCAG ACCCCAACCC chr13:98050033-98050533 - 18 2.56e-09 GCTCCCAGGA CCTGGCACAGTGCCAG CATGCAGTAG chr6:31777121-31777621 + 50 2.56e-09 GTGACTCAGG CCTGGCACAGTGCCAG GGACAGACCC chr1:234977849-234978349 + 38 3.60e-09 CTGGCAGAAG CTTGGCACTGTGCCAG GCAGGAGAGA chr19:48539585-48540085 + 26 3.60e-09 gtgcagatct cttggcactgtgccag gcactgagta chr22:25486943-25487443 - 7 4.54e-09 CTTCTATGTG CCTGGCACCGTGCCAG GAATTC chr12:57245177-57245677 + 61 4.54e-09 gtggcgcaat cttggctcagtgccag ctccgcctcc chr1:45875938-45876438 - 38 6.14e-09 TTAAACCATT CTTGGCACACTGCCAA TGTAATGTAT chr1:27116180-27116680 + 49 6.14e-09 GGCCCAGAAT CCTGGCACAGTGCCAA GCACCCTGAA chrX:74514417-74514917 - 22 9.53e-09 CTGACACCAC CTTGGCACCTTGCCAG GAGTAGGAGA chr22:37400744-37401244 - 22 1.16e-08 GTCCCCAGGA CTTGGCACAGAGCCAG GACTTGAGAA chr2:218864139-218864639 + 67 1.36e-08 attacaggtg cctggcaccatgccag ctaatttttt chr12:121404697-12140519 + 24 1.69e-08 ATTTGAAAAT CCTGGCACTGTGCCAG AAAGAGAGCT chr17:38881491-38881991 - 26 1.69e-08 GGCCCAACTC CCTGGCAAAGTGCCAG AAGAAACCAC chr3:159825417-159825917 + 35 1.69e-08 ctactatatg cctggcactgtgccag atgctagatg chr15:66817926-66818426 + 70 2.01e-08 gtggtgcaat cttggctcactgccag ctccacctcc chr1:110176225-110176725 + 33 2.01e-08 CTGCTTCTGC CTTGGCTCCATGCCAG ATGTGTGGCA chr12:56150523-56151023 + 30 2.01e-08 ACCACTCATA CTTGGCAAAATGCCAA AAATGGGAAA chr6:1170780-1171280 - 46 2.01e-08 CGTGAGAGGC CTTGGCAATGTGCCAG TACCTGGAAA chr16:77896348-77896848 + 39 2.01e-08 GTCAGGGACT CTTGGCAAGGTGCCAA GGGAGGAGAA chr5:158320244-158320744 - 32 2.37e-08 CACTCACCAC CCTGGCACCATGCCAA AAGCACGCTT chr5:96928883-96929383 + 20 2.37e-08 acacagaaat cctggcaccatgccaa tgtgtaaaac chr1:223731385-223731885 - 46 2.85e-08 TTGGTGCATT CCTGGCTCCGTGCCAG GCCTGTACTC chr9:85960728-85961228 - 54 2.85e-08 ACTCCTCCTA CTTGGCTCCCTGCCAG ACTTAAGCAG chr12:105410043-10541054 + 12 2.85e-08 TGCTCTTATT CTTGGCTCCCTGCCAG TCATCACACA chr7:99375914-99376414 - 31 3.35e-08 GTGGTACAGT CTTGGCTCACTGCCAA GGCAGGTTCA chr3:156171792-156172292 - 53 3.35e-08 AGAGATTTTT CTTGGCATAATGCCAA GAAATATAAA chr6:157649772-157650272 - 35 3.93e-08 ACCCCCAGCG CCTGGCACAGAGCCAG CCCCTCTCCC chr21:34543874-34544374 + 31 3.93e-08 agctgcctta cttggcaacttgccag aattcttgcc chr9:87815986-87816486 - 48 4.63e-08 AATGTGTGCT CTTGGCACTTTGCCAA AAATCAGTTG chr6:108699681-108700181 + 18 4.63e-08 GAGCAAAATG CTTGGCACTGAGCCAG TTAGACTAAA chr11:116062336-11606283 - 53 4.63e-08 CAGACCTGCT CTTGGCACTTTGCCAA TCTCTTAGTC chr15:89383541-89384041 + 47 5.29e-08 TGGGATGCGT CTTGGCTCAGAGCCAG CGTCTTCTTG chr7:104884054-104884554 - 60 6.08e-08 GGAGGACATG CTTGGCAAGCTGCCAA AACAAAGGCC chr5:10288448-10288948 - 41 6.08e-08 CCTAAGAGGG CTTGGCCCGGTGCCAG GTGGCTGCTT chr10:15813390-15813890 + 28 6.08e-08 attcacaaca cctggcataatgccag gcacatacta chr21:37878909-37879409 - 2 7.84e-08 CACTACTGTA CTTGGCACCTAGCCAG A chr10:88092914-88093414 - 56 8.99e-08 GCACAGCACT GCTGGCACAGTGCCAG ATAATCATGC chr3:50610511-50611011 + 19 8.99e-08 CCCTCCCTCA CTTGGCACCAGGCCAG TTGCGATAAG chr15:71201505-71202005 + 43 1.01e-07 GAGAGGGATT CTTGGCTCGGAGCCAG GGGGACTTGA chr7:112202646-112203146 - 78 1.01e-07 AACGCTA CCTGGCAAGCTGCCAG AACTGAGGTG chr16:1271755-1272255 + 15 1.14e-07 CGTCTGCATG GTTGGCACCCTGCCAG CTGGTCTCTG chr14:94048722-94049222 - 42 1.14e-07 AAGCAGAGTT CTTGGCTGCATGCCAG GTACCCAGTA chr10:69758038-69758538 - 42 1.28e-07 GCTAGTTGAA CTTGGCTGTGTGCCAG CAGCCAGCAG chr10:102766795-10276729 + 12 1.28e-07 TCATGTAATT CTTGGCTACTTGCCAG TATGGTTGGG chr13:98507154-98507654 + 32 1.28e-07 CCTGCGGGCT CCTGGCACAGGGCCAA CGCTTCACAC chr17:2264023-2264523 + 47 1.28e-07 CCTTGTCTAA CTTGGCAAGGAGCCAA AGGAGGACTT chr13:112849452-11284995 - 57 1.43e-07 CCACTGAATC CCTGGCACACAGCCAA AACTCAACAA chr14:69716067-69716567 - 26 1.43e-07 CAACATGAAT CCTGGCATGCTGCCAG CTATCTTTTG chr1:80054146-80054646 + 49 1.43e-07 tgagctcatt cttggctcggagccaa tattatctgt chr20:46255378-46255878 + 62 1.61e-07 GGCTAGGTGC CCTGGCAGCCTGCCAA CTCTTCACTG chr1:153880947-153881447 + 40 1.61e-07 CTTTGCAGCC CCTGGCATGATGCCAA CACTCAGTCA chr21:29349602-29350102 + 74 1.77e-07 CACTTAGACT CTTGGCATTGAGCCAG TTAAACTCCT chr1:221284035-221284535 - 44 1.77e-07 TGACTTATTC CTTGGCATTTTGCCAA CTACCCACAA chr5:109468638-109469138 + 74 1.97e-07 CACTGTGGTT CTTGGCAGGGAGCCAA CGTTGTCATG chr5:54249586-54250086 - 66 2.18e-07 CGGTTTTTCT CCTGGCAGGCTGCCAA TTGCTGTGTG chr17:73474220-73474720 - 63 2.18e-07 CCAGAGCGAA CTTGGCACGTGGCCAG TTGTGAGTCA chr7:132255810-132256310 - 30 2.39e-07 GCCTCTTGTA CTTGGCTAGGAGCCAG CATGATTTCC chr5:10601222-10601722 + 33 2.63e-07 cgaggctcaa cctggctgggtgccaa ctcctcccag chr10:61974520-61975020 + 40 2.63e-07 ATGACTAGTG CTTGGCTGCTTGCCAA GCGGTCTAAA chr15:80033419-80033919 + 51 2.89e-07 GCCTCTCTAA TCTGGCACCCTGCCAG CCCCAGCTCC chr10:68798461-68798961 + 23 2.89e-07 CAGCAGACAA CTTGGCAAGAGGCCAG GAACTAgccg chr17:76082701-76083201 - 62 2.89e-07 CTCAGTGCCT CTTGGCCCAGGGCCAG GCAGTCGTGG chr5:134466760-134467260 + 16 3.16e-07 GGCCTGTCCC CTTGGCTTGTTGCCAA ATGTGGTGTT chr10:121497463-12149796 - 76 3.16e-07 ATGAATGGA CCTGGCTGCATGCCAA TAAAATTTAA chr1:93591681-93592181 - 34 3.16e-07 TAATTGAACT CTTGGCCAGCTGCCAG CAGCCTCAGA chr19:29671731-29672231 + 45 3.16e-07 TTGGGACCTG CTTGGAACCGTGCCAA GCtacttatg chr11:112320579-11232107 + 52 3.46e-07 GACGCACAGG CCTGGCCTAGTGCCAA TACTCAGTCA chr13:49292709-49293209 - 30 3.46e-07 CAGTCACAGC CCTGGCATGGAGCCAA TGTTTGGATG chr5:110054230-110054730 - 9 3.78e-07 CACTGAGGCT GTTGGCAAGATGCCAA AACATCAG chr5:139749241-139749741 - 30 3.78e-07 GAGATGATGT TTTGGCACAGGGCCAG CACATCCTAG chr2:232473334-232473834 + 41 3.78e-07 agttctggca cttggcacttggccaa actcctttca chr6:143264369-143264869 - 78 3.78e-07 GTGAGAT TCTGGCTCAGTGCCAA TTTCCAACTG chr6:118660160-118660660 + 65 4.10e-07 AGCTGGGGGA GTTGGCAGATTGCCAG ATAAGGGGCC chr1:78620128-78620628 + 67 4.46e-07 GTTAGTGGCA GTTGGCATGCTGCCAG CTGAGTTTTT chr7:32937558-32938058 + 55 4.84e-07 taatcagaga cttggcgaggtgccag gactttgtcc chr12:104387172-10438767 + 21 5.21e-07 TTCCTGGGTA GCTGGCAAACTGCCAA ATTATTTCAT chr10:87586165-87586665 + 50 5.63e-07 ccctaggtaa tttggcagcctgccaa atCCTACTTA chr19:28405799-28406299 + 50 5.63e-07 GCCCATAATC CCTGGCCCACAGCCAG GTCTTTGTGT chr9:94694129-94694629 + 4 6.07e-07 TTT CCTGGCCTCATGCCAA TCTGTGAATA chr8:60619591-60620091 - 29 6.07e-07 AGGAGTCAGA CTTGGCATTAGGCCAA ATAAATAGCA chr15:70526291-70526791 - 22 6.07e-07 CTGCATGTGC CCTGGCCTGATGCCAG TTCCAGGCAG chr1:237005561-237006061 - 55 6.52e-07 TGTAACTCTT TTTGGCACTAAGCCAG AAGCAGCAAT chr13:43057984-43058484 - 23 8.04e-07 AGCTCTACCT CCTGGCTAGAAGCCAA CAAACTCAAG chr5:125198474-125198974 - 51 9.20e-07 ACAGAGATTG GTTGGCTGCCTGCCAA AAGTTCAGTG chr12:10722031-10722531 - 18 9.20e-07 CCATGCTCCT GTTGGCCACATGCCAG CAAAGAGATG chr10:21724701-21725201 - 42 9.79e-07 GCACTGTCTT TTTGGCAGCAAGCCAG CTCTACTAAC chr6:156585791-156586291 - 37 1.11e-06 TCAGCCTCTA GTTGGCTGCGAGCCAG TCCTTCATTT chr15:75047046-75047546 - 1 1.11e-06 CACACTTCCT CTTGGCTCCATGCCAC chr14:73717207-73717707 - 16 1.18e-06 TGAGGGAAGA GTTGGCAAGAGGCCAG AATTCTAGTT chr10:100286160-10028666 + 73 1.33e-06 CCCCGCTCAT CCTGGCACCATCCCAG TCACCCTGAC chr6:37240160-37240660 + 29 1.33e-06 acagttcttt cttggctgttggccag agaactcagt chr15:70062330-70062830 - 14 1.49e-06 TACTTAGTTT TTTGGCCGCCTGCCAG CCAGAGGCGG chr1:229221425-229221925 - 73 1.58e-06 GGAACAAATA GTTGGCCTATTGCCAA AGAAAATGTG chr5:148924760-148925260 - 70 1.77e-06 ACCACCTTCC CTTGGATGCCTGCCAG TTTCCTCCCT chr1:24043485-24043985 + 82 2.41e-06 gtggcacaat catggctcacagcCag caa chr5:81736016-81736516 - 45 3.53e-06 AAACAGGGCT TTTGGCATAGCGCCAA TTTTGTGCTT chrX:2475348-2475848 - 38 4.04e-06 AGTGTGATCC CTTGGCCACATGCCTA GGGAACATCT chr1:81126982-81127482 + 3 5.86e-06 AA CCTGGAGATGTGCCAA GCTGTCAAAA chr21:33491784-33492284 + 56 6.10e-06 CTGTTGAGGG GCTGGCGACAGGCCAG AGGACAAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACVRTGCCAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:181127021-181127521 2.8e-10 58_[-1]_26 chr14:24425684-24426184 2.8e-10 1_[+1]_83 chr14:95291773-95292273 2.8e-10 25_[-1]_59 chr2:63064157-63064657 2.8e-10 36_[+1]_48 chr2:165825014-165825514 8.4e-10 37_[+1]_47 chr5:41747188-41747688 8.4e-10 45_[-1]_39 chr12:120646972-12064747 8.4e-10 51_[+1]_33 chr12:120091304-12009180 2.6e-09 34_[+1]_50 chr6:41449686-41450186 2.6e-09 48_[-1]_36 chr5:177404063-177404563 2.6e-09 62_[-1]_22 chr13:98050033-98050533 2.6e-09 17_[-1]_67 chr6:31777121-31777621 2.6e-09 49_[+1]_35 chr1:234977849-234978349 3.6e-09 37_[+1]_47 chr19:48539585-48540085 3.6e-09 25_[+1]_59 chr22:25486943-25487443 4.5e-09 6_[-1]_78 chr12:57245177-57245677 4.5e-09 60_[+1]_24 chr1:45875938-45876438 6.1e-09 37_[-1]_47 chr1:27116180-27116680 6.1e-09 48_[+1]_36 chrX:74514417-74514917 9.5e-09 21_[-1]_63 chr22:37400744-37401244 1.2e-08 21_[-1]_63 chr2:218864139-218864639 1.4e-08 66_[+1]_18 chr12:121404697-12140519 1.7e-08 23_[+1]_61 chr17:38881491-38881991 1.7e-08 25_[-1]_59 chr3:159825417-159825917 1.7e-08 34_[+1]_50 chr15:66817926-66818426 2e-08 69_[+1]_15 chr1:110176225-110176725 2e-08 32_[+1]_52 chr12:56150523-56151023 2e-08 29_[+1]_55 chr6:1170780-1171280 2e-08 45_[-1]_39 chr16:77896348-77896848 2e-08 38_[+1]_46 chr5:158320244-158320744 2.4e-08 31_[-1]_53 chr5:96928883-96929383 2.4e-08 19_[+1]_65 chr1:223731385-223731885 2.9e-08 45_[-1]_39 chr9:85960728-85961228 2.9e-08 53_[-1]_31 chr12:105410043-10541054 2.9e-08 11_[+1]_73 chr7:99375914-99376414 3.4e-08 30_[-1]_54 chr3:156171792-156172292 3.4e-08 52_[-1]_32 chr6:157649772-157650272 3.9e-08 34_[-1]_50 chr21:34543874-34544374 3.9e-08 30_[+1]_54 chr9:87815986-87816486 4.6e-08 47_[-1]_37 chr6:108699681-108700181 4.6e-08 17_[+1]_67 chr11:116062336-11606283 4.6e-08 52_[-1]_32 chr15:89383541-89384041 5.3e-08 46_[+1]_38 chr7:104884054-104884554 6.1e-08 59_[-1]_25 chr5:10288448-10288948 6.1e-08 40_[-1]_44 chr10:15813390-15813890 6.1e-08 27_[+1]_57 chr21:37878909-37879409 7.8e-08 1_[-1]_83 chr10:88092914-88093414 9e-08 55_[-1]_29 chr3:50610511-50611011 9e-08 18_[+1]_66 chr15:71201505-71202005 1e-07 42_[+1]_42 chr7:112202646-112203146 1e-07 77_[-1]_7 chr16:1271755-1272255 1.1e-07 14_[+1]_70 chr14:94048722-94049222 1.1e-07 41_[-1]_43 chr10:69758038-69758538 1.3e-07 41_[-1]_43 chr10:102766795-10276729 1.3e-07 11_[+1]_73 chr13:98507154-98507654 1.3e-07 31_[+1]_53 chr17:2264023-2264523 1.3e-07 46_[+1]_38 chr13:112849452-11284995 1.4e-07 56_[-1]_28 chr14:69716067-69716567 1.4e-07 25_[-1]_59 chr1:80054146-80054646 1.4e-07 48_[+1]_36 chr20:46255378-46255878 1.6e-07 61_[+1]_23 chr1:153880947-153881447 1.6e-07 39_[+1]_45 chr21:29349602-29350102 1.8e-07 73_[+1]_11 chr1:221284035-221284535 1.8e-07 43_[-1]_41 chr5:109468638-109469138 2e-07 73_[+1]_11 chr5:54249586-54250086 2.2e-07 65_[-1]_19 chr17:73474220-73474720 2.2e-07 62_[-1]_22 chr7:132255810-132256310 2.4e-07 29_[-1]_55 chr5:10601222-10601722 2.6e-07 32_[+1]_52 chr10:61974520-61975020 2.6e-07 39_[+1]_45 chr15:80033419-80033919 2.9e-07 50_[+1]_34 chr10:68798461-68798961 2.9e-07 22_[+1]_62 chr17:76082701-76083201 2.9e-07 61_[-1]_23 chr5:134466760-134467260 3.2e-07 15_[+1]_69 chr10:121497463-12149796 3.2e-07 75_[-1]_9 chr1:93591681-93592181 3.2e-07 33_[-1]_51 chr19:29671731-29672231 3.2e-07 44_[+1]_40 chr11:112320579-11232107 3.5e-07 51_[+1]_33 chr13:49292709-49293209 3.5e-07 29_[-1]_55 chr5:110054230-110054730 3.8e-07 8_[-1]_76 chr5:139749241-139749741 3.8e-07 29_[-1]_55 chr2:232473334-232473834 3.8e-07 40_[+1]_44 chr6:143264369-143264869 3.8e-07 77_[-1]_7 chr6:118660160-118660660 4.1e-07 64_[+1]_20 chr1:78620128-78620628 4.5e-07 66_[+1]_18 chr7:32937558-32938058 4.8e-07 54_[+1]_30 chr12:104387172-10438767 5.2e-07 20_[+1]_64 chr10:87586165-87586665 5.6e-07 49_[+1]_35 chr19:28405799-28406299 5.6e-07 49_[+1]_35 chr9:94694129-94694629 6.1e-07 3_[+1]_81 chr8:60619591-60620091 6.1e-07 28_[-1]_56 chr15:70526291-70526791 6.1e-07 21_[-1]_63 chr1:237005561-237006061 6.5e-07 54_[-1]_30 chr13:43057984-43058484 8e-07 22_[-1]_62 chr5:125198474-125198974 9.2e-07 50_[-1]_34 chr12:10722031-10722531 9.2e-07 17_[-1]_67 chr10:21724701-21725201 9.8e-07 41_[-1]_43 chr6:156585791-156586291 1.1e-06 36_[-1]_48 chr15:75047046-75047546 1.1e-06 [-1]_84 chr14:73717207-73717707 1.2e-06 15_[-1]_69 chr10:100286160-10028666 1.3e-06 72_[+1]_12 chr6:37240160-37240660 1.3e-06 28_[+1]_56 chr15:70062330-70062830 1.5e-06 13_[-1]_71 chr1:229221425-229221925 1.6e-06 72_[-1]_12 chr5:148924760-148925260 1.8e-06 69_[-1]_15 chr1:24043485-24043985 2.4e-06 81_[+1]_3 chr5:81736016-81736516 3.5e-06 44_[-1]_40 chrX:2475348-2475848 4e-06 37_[-1]_47 chr1:81126982-81127482 5.9e-06 2_[+1]_82 chr21:33491784-33492284 6.1e-06 55_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACVRTGCCAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYTGGCACVRTGCCAR width=16 seqs=109 chr1:181127021-181127521 ( 59) CTTGGCACAGTGCCAG 1 chr14:24425684-24426184 ( 2) CTTGGCACAGTGCCAG 1 chr14:95291773-95292273 ( 26) CTTGGCACAGTGCCAG 1 chr2:63064157-63064657 ( 37) CTTGGCACAGTGCCAG 1 chr2:165825014-165825514 ( 38) CTTGGCACAGTGCCAA 1 chr5:41747188-41747688 ( 46) CTTGGCACAGTGCCAA 1 chr12:120646972-12064747 ( 52) CTTGGCACAGTGCCAA 1 chr12:120091304-12009180 ( 35) CCTGGCACAGTGCCAG 1 chr6:41449686-41450186 ( 49) CCTGGCACAGTGCCAG 1 chr5:177404063-177404563 ( 63) CCTGGCACAGTGCCAG 1 chr13:98050033-98050533 ( 18) CCTGGCACAGTGCCAG 1 chr6:31777121-31777621 ( 50) CCTGGCACAGTGCCAG 1 chr1:234977849-234978349 ( 38) CTTGGCACTGTGCCAG 1 chr19:48539585-48540085 ( 26) CTTGGCACTGTGCCAG 1 chr22:25486943-25487443 ( 7) CCTGGCACCGTGCCAG 1 chr12:57245177-57245677 ( 61) CTTGGCTCAGTGCCAG 1 chr1:45875938-45876438 ( 38) CTTGGCACACTGCCAA 1 chr1:27116180-27116680 ( 49) CCTGGCACAGTGCCAA 1 chrX:74514417-74514917 ( 22) CTTGGCACCTTGCCAG 1 chr22:37400744-37401244 ( 22) CTTGGCACAGAGCCAG 1 chr2:218864139-218864639 ( 67) CCTGGCACCATGCCAG 1 chr12:121404697-12140519 ( 24) CCTGGCACTGTGCCAG 1 chr17:38881491-38881991 ( 26) CCTGGCAAAGTGCCAG 1 chr3:159825417-159825917 ( 35) CCTGGCACTGTGCCAG 1 chr15:66817926-66818426 ( 70) CTTGGCTCACTGCCAG 1 chr1:110176225-110176725 ( 33) CTTGGCTCCATGCCAG 1 chr12:56150523-56151023 ( 30) CTTGGCAAAATGCCAA 1 chr6:1170780-1171280 ( 46) CTTGGCAATGTGCCAG 1 chr16:77896348-77896848 ( 39) CTTGGCAAGGTGCCAA 1 chr5:158320244-158320744 ( 32) CCTGGCACCATGCCAA 1 chr5:96928883-96929383 ( 20) CCTGGCACCATGCCAA 1 chr1:223731385-223731885 ( 46) CCTGGCTCCGTGCCAG 1 chr9:85960728-85961228 ( 54) CTTGGCTCCCTGCCAG 1 chr12:105410043-10541054 ( 12) CTTGGCTCCCTGCCAG 1 chr7:99375914-99376414 ( 31) CTTGGCTCACTGCCAA 1 chr3:156171792-156172292 ( 53) CTTGGCATAATGCCAA 1 chr6:157649772-157650272 ( 35) CCTGGCACAGAGCCAG 1 chr21:34543874-34544374 ( 31) CTTGGCAACTTGCCAG 1 chr9:87815986-87816486 ( 48) CTTGGCACTTTGCCAA 1 chr6:108699681-108700181 ( 18) CTTGGCACTGAGCCAG 1 chr11:116062336-11606283 ( 53) CTTGGCACTTTGCCAA 1 chr15:89383541-89384041 ( 47) CTTGGCTCAGAGCCAG 1 chr7:104884054-104884554 ( 60) CTTGGCAAGCTGCCAA 1 chr5:10288448-10288948 ( 41) CTTGGCCCGGTGCCAG 1 chr10:15813390-15813890 ( 28) CCTGGCATAATGCCAG 1 chr21:37878909-37879409 ( 2) CTTGGCACCTAGCCAG 1 chr10:88092914-88093414 ( 56) GCTGGCACAGTGCCAG 1 chr3:50610511-50611011 ( 19) CTTGGCACCAGGCCAG 1 chr15:71201505-71202005 ( 43) CTTGGCTCGGAGCCAG 1 chr7:112202646-112203146 ( 78) CCTGGCAAGCTGCCAG 1 chr16:1271755-1272255 ( 15) GTTGGCACCCTGCCAG 1 chr14:94048722-94049222 ( 42) CTTGGCTGCATGCCAG 1 chr10:69758038-69758538 ( 42) CTTGGCTGTGTGCCAG 1 chr10:102766795-10276729 ( 12) CTTGGCTACTTGCCAG 1 chr13:98507154-98507654 ( 32) CCTGGCACAGGGCCAA 1 chr17:2264023-2264523 ( 47) CTTGGCAAGGAGCCAA 1 chr13:112849452-11284995 ( 57) CCTGGCACACAGCCAA 1 chr14:69716067-69716567 ( 26) CCTGGCATGCTGCCAG 1 chr1:80054146-80054646 ( 49) CTTGGCTCGGAGCCAA 1 chr20:46255378-46255878 ( 62) CCTGGCAGCCTGCCAA 1 chr1:153880947-153881447 ( 40) CCTGGCATGATGCCAA 1 chr21:29349602-29350102 ( 74) CTTGGCATTGAGCCAG 1 chr1:221284035-221284535 ( 44) CTTGGCATTTTGCCAA 1 chr5:109468638-109469138 ( 74) CTTGGCAGGGAGCCAA 1 chr5:54249586-54250086 ( 66) CCTGGCAGGCTGCCAA 1 chr17:73474220-73474720 ( 63) CTTGGCACGTGGCCAG 1 chr7:132255810-132256310 ( 30) CTTGGCTAGGAGCCAG 1 chr5:10601222-10601722 ( 33) CCTGGCTGGGTGCCAA 1 chr10:61974520-61975020 ( 40) CTTGGCTGCTTGCCAA 1 chr15:80033419-80033919 ( 51) TCTGGCACCCTGCCAG 1 chr10:68798461-68798961 ( 23) CTTGGCAAGAGGCCAG 1 chr17:76082701-76083201 ( 62) CTTGGCCCAGGGCCAG 1 chr5:134466760-134467260 ( 16) CTTGGCTTGTTGCCAA 1 chr10:121497463-12149796 ( 76) CCTGGCTGCATGCCAA 1 chr1:93591681-93592181 ( 34) CTTGGCCAGCTGCCAG 1 chr19:29671731-29672231 ( 45) CTTGGAACCGTGCCAA 1 chr11:112320579-11232107 ( 52) CCTGGCCTAGTGCCAA 1 chr13:49292709-49293209 ( 30) CCTGGCATGGAGCCAA 1 chr5:110054230-110054730 ( 9) GTTGGCAAGATGCCAA 1 chr5:139749241-139749741 ( 30) TTTGGCACAGGGCCAG 1 chr2:232473334-232473834 ( 41) CTTGGCACTTGGCCAA 1 chr6:143264369-143264869 ( 78) TCTGGCTCAGTGCCAA 1 chr6:118660160-118660660 ( 65) GTTGGCAGATTGCCAG 1 chr1:78620128-78620628 ( 67) GTTGGCATGCTGCCAG 1 chr7:32937558-32938058 ( 55) CTTGGCGAGGTGCCAG 1 chr12:104387172-10438767 ( 21) GCTGGCAAACTGCCAA 1 chr10:87586165-87586665 ( 50) TTTGGCAGCCTGCCAA 1 chr19:28405799-28406299 ( 50) CCTGGCCCACAGCCAG 1 chr9:94694129-94694629 ( 4) CCTGGCCTCATGCCAA 1 chr8:60619591-60620091 ( 29) CTTGGCATTAGGCCAA 1 chr15:70526291-70526791 ( 22) CCTGGCCTGATGCCAG 1 chr1:237005561-237006061 ( 55) TTTGGCACTAAGCCAG 1 chr13:43057984-43058484 ( 23) CCTGGCTAGAAGCCAA 1 chr5:125198474-125198974 ( 51) GTTGGCTGCCTGCCAA 1 chr12:10722031-10722531 ( 18) GTTGGCCACATGCCAG 1 chr10:21724701-21725201 ( 42) TTTGGCAGCAAGCCAG 1 chr6:156585791-156586291 ( 37) GTTGGCTGCGAGCCAG 1 chr15:75047046-75047546 ( 1) CTTGGCTCCATGCCAC 1 chr14:73717207-73717707 ( 16) GTTGGCAAGAGGCCAG 1 chr10:100286160-10028666 ( 73) CCTGGCACCATCCCAG 1 chr6:37240160-37240660 ( 29) CTTGGCTGTTGGCCAG 1 chr15:70062330-70062830 ( 14) TTTGGCCGCCTGCCAG 1 chr1:229221425-229221925 ( 73) GTTGGCCTATTGCCAA 1 chr5:148924760-148925260 ( 70) CTTGGATGCCTGCCAG 1 chr1:24043485-24043985 ( 82) CATGGCTCACAGCCAG 1 chr5:81736016-81736516 ( 45) TTTGGCATAGCGCCAA 1 chrX:2475348-2475848 ( 38) CTTGGCCACATGCCTA 1 chr1:81126982-81127482 ( 3) CCTGGAGATGTGCCAA 1 chr21:33491784-33492284 ( 56) GCTGGCGACAGGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACVRTGCCAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 9.44632 E= 6.5e-258 -1341 163 -126 -169 -469 41 -1341 144 -1341 -1341 -1341 208 -1341 -1341 193 -1341 -1341 -1341 193 -1341 -311 189 -1341 -1341 142 -138 -326 1 -30 99 -84 -78 52 16 -26 -69 -5 -38 74 -88 -44 -484 -138 159 -1341 -484 191 -1341 -1341 193 -1341 -1341 -1341 193 -1341 -1341 206 -1341 -1341 -469 74 -484 118 -1341 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACVRTGCCAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 109 E= 6.5e-258 0.000000 0.816514 0.110092 0.073394 0.009174 0.348624 0.000000 0.642202 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.027523 0.972477 0.000000 0.000000 0.633028 0.100917 0.027523 0.238532 0.192661 0.522936 0.146789 0.137615 0.339450 0.293578 0.220183 0.146789 0.229358 0.201835 0.440367 0.128440 0.174312 0.009174 0.100917 0.715596 0.000000 0.009174 0.990826 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.990826 0.000000 0.000000 0.009174 0.394495 0.009174 0.596330 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACVRTGCCAR MEME-1 regular expression -------------------------------------------------------------------------------- C[TC]TGGC[AT]C[ACG][GAC]TGCCA[GA] -------------------------------------------------------------------------------- Time 734.52 secs. ******************************************************************************** ******************************************************************************** MOTIF BTKTBTKTGTKTRTKTBTKTGTKTKKB MEME-2 width = 27 sites = 147 llr = 1784 E-value = 4.9e-223 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTKTBTKTGTKTRTKTBTKTGTKTKKB MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11:1:::111::3:111:11211::21 pos.-specific C 31113:1:1:1:222233:211::2:2 probability G 414:4143614:414:313:6:41434 matrix T 27583956285a274736671859453 bits 2.1 1.9 * 1.7 * * 1.5 * * * Relative 1.2 * * * Entropy 1.0 * * * * * * * (17.5 bits) 0.8 * * * * * *** 0.6 *** *** *** * * *** *** 0.4 *********** * * *** ***** 0.2 ************ *** ********** 0.0 --------------------------- Multilevel GTTTGTTTGTTTGTTTGTTTGTTTTTG consensus C G C GG G ACG TCG G GGT sequence T T C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTKTBTKTGTKTRTKTBTKTGTKTKKB MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrX:16771178-16771678 - 15 1.28e-12 AGTCTTTGTT GGGTTTTTGTTTGTTTGTTTGTTTTTT AAGACAGTTG chr12:57111956-57112456 - 70 3.87e-12 GTGT GTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGGTGTTG chr9:94694129-94694629 + 51 3.87e-12 Atgtgtgagt gtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgtATT chr7:128360872-128361372 - 36 3.87e-12 TGCCGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGAGAGAG chr1:156661312-156661812 + 46 3.87e-12 CCCAGTCCgt gtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgtCCT chr1:33364158-33364658 - 37 3.87e-12 TTGAGCGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGAAAGCA chr6:26365273-26365773 + 5 3.87e-12 Ctgt gtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr12:1924592-1925092 + 6 3.87e-12 AGGgt gtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgagag chr1:28884835-28885335 - 5 3.87e-12 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTG TGTG chr21:41777447-41777947 - 72 3.87e-12 GT GTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGATGTGT chr17:29744665-29745165 + 4 3.87e-12 tgt gtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgtTTA chr5:93582530-93583030 + 44 8.34e-12 GAGCGTAAgt gtgtgtgtgtgtatgtgtgtgtgtgtg tgACCATAGA chr5:139489128-139489628 + 29 4.26e-11 gtcATTTTTT GTttttgtttttttttgcttgtttgtt tgtttttgag chr7:155585424-155585924 + 16 5.30e-11 gtatatgtgt gtttgtgtgtttatgtgtttgtatggg tgtatgtgtg chr5:154835314-154835814 + 58 6.56e-11 TACACGTTTT CTGACtttttttgtttttttgtttttt gagacagagt chr1:28648549-28649049 + 55 8.10e-11 ACTGAAAAGA GATTCTGTGTGTGTTTTTTTTTTTTTT TAGAGGCTGC chr19:32745569-32746069 + 17 1.22e-10 TGGCTGATGT CATTCTGTGTGTGTGTGTGTGTGTGTG TGAGAGAGAA chr3:136802535-136803035 + 55 1.50e-10 gtaagtgagt gagtgtgtgtgtgtgtctgtgtgtgtg tgagagagag chr9:129607206-129607706 + 70 1.83e-10 gtgtgtggtg tggtgtgtgtgtgtgtgtgtgtgtgtg tgtg chr14:104979720-10498022 - 50 1.83e-10 CTGTGTGTCT CTGTGTGTGTGTCTGTGTGTGTGTGAG TGTGCCTCTA chr10:132905209-13290570 + 52 2.22e-10 tttttttttt tttttttggtttacttccttgtttttc tggatcatat chr1:235505116-235505616 + 64 2.22e-10 GGCTATGGGG CGGtttttgtttctgcttttgtttttg agacggagtc chr17:43367557-43368057 - 66 3.26e-10 TTATGTGG TGTTGTGTATGTGTGTGTGTGTTTTTG TGTTGTATAA chr1:225442672-225443172 - 5 3.94e-10 TTTTGGCCCT CCGTGTGTGTGTGTGTGTGTGTGTGTG TGTG chr17:7750228-7750728 + 14 6.84e-10 ttgtcttcct cttttttggtttacgcctttgttttgt tggtgtgtat chr15:40092243-40092743 - 5 8.18e-10 GCACAAGGGT GTGTGTGTGTGTGTGTGTGTGAGTCTG TGTG chrX:41333479-41333979 - 37 1.16e-09 CAGCTTTCGT TTTTCGTTTTTTTTGTTTTTGTTTTTT TTTTCCTAAC chr15:78784712-78785212 - 45 1.16e-09 GGGGAGGTAC CTTTTTTTTTTTTTTAATTTGTTTTGG TGGAGCACAT chr12:47949112-47949612 + 69 1.16e-09 TTGTGGATTT GTTttttgttttgttttgttttgtttt gtttt chr12:56115991-56116491 - 5 1.64e-09 TCTTTTCTTT CTTTCTTTCTTTCTTTCTTTCTTTCTT TCTT chr6:28790424-28790924 - 68 2.29e-09 GCAGGG TTTTTTTTTTTTCTTTCTTTCTTTCAG TTTTGCCTAA chrX:53370803-53371303 - 29 5.14e-09 AAGGTTTTTG TTTTGTTTGTTTGCTTGTTCCATTGTT TTGATGGAGC chr19:30079163-30079663 + 33 6.01e-09 acctcttgct ctttcttggtttacacctttgttttgg tggtgcacat chr1:154607548-154608048 - 54 6.01e-09 TGTGCGTCTT GTGAGTGTGTGTGTGTGGGTGTGTGTC GTCTTGCCAA chr21:45118028-45118528 + 42 6.01e-09 catggtgttg gtttcttggattctatttttgttttgc tggagcacct chr1:16111720-16112220 - 35 6.01e-09 GTCACTGTGT CTTTGTGGGAGTGTGTGCTTTTGTGTG GATTTGTGTG chr21:44609146-44609646 - 65 7.02e-09 TGTCTTTTT CTTTCTGGATTTATATCCTTGTTTTGG TGGAGCACAT chr17:76547577-76548077 - 28 7.02e-09 AATGTGTGTT GTGTGTGTGTGTGTGAATGTGTGTCTC TGTGAATGTG chr17:49193338-49193838 - 18 9.52e-09 TAAGGGACTG TTTTCTTTCTTTCTTTCTTTCTTTTAA TCTCTTCTCT chr6:44247022-44247522 + 25 1.28e-08 TGTATTCGTG TTGTTTTTGTTTTTTTCTGTCCTTTAG GGAGCCTTAG chrX:23804519-23805019 + 44 1.72e-08 ctttctctct ttttctttctttctttccttctttctc tttctctctc chr11:124861701-12486220 - 42 1.98e-08 CCCCCCACTG GTGTGTGAGTGTGTGTGTGTGTGTTCA CGTGCTAGGG chr17:4622337-4622837 + 20 2.64e-08 tccacattat tttttttagtttactttctcattttgt gggtgcacat chr15:77968455-77968955 + 47 2.64e-08 tggggaggta cctttttttttttttaatttgttttgg tggagcacat chr19:32781232-32781732 + 23 3.03e-08 ccatcttctt cttacttggtttactcccttgttttgg tggagagcat chr6:26382572-26383072 - 45 3.48e-08 TTTCCTTTCT CATTCTCTTTTTCTTTCTTTCTTTCTT TCATATGTCT chr11:120346978-12034747 + 26 5.98e-08 ttctttcttt ctctttctttttctttctttctttctc tctgtctctc chr21:45332356-45332856 + 13 5.98e-08 gtgtgtcagt gtgtctgtgtgtgtgtctcagtgtgtc tgtatctgtg chr2:240814231-240814731 - 69 6.83e-08 TGCTT GTTTCTTGGTTTCCTGTCTTGTTTTGC TGGAGCACAT chr8:41827591-41828091 - 13 8.87e-08 GCATGTGTGA GTGCGTGTGTGTATGTGGGTGTGTGCG TGAGTGTGCA chr1:21346291-21346791 + 58 1.15e-07 GTTCATTGCT GTGTGTTTGTGTGTCTGCTATATTTGG GGTTCGTTGC chr1:53137709-53138209 + 24 1.30e-07 ggatcctttg tcctcttggtttacttccttgttttgc tgaaacatct chr19:1771079-1771579 + 33 1.47e-07 ccacaccatc ctttttttatttacctcctcgtttgaa tggaacacat chr22:43582368-43582868 - 11 1.47e-07 ACATCTCTTT GTTTCTTGATTTACATTCTTCTTTTGC TGGAGTACTT chr1:24970832-24971332 + 60 1.67e-07 ATGAATGTGA GTGTGTGTGAGTGTGCATGTGTATGAG TGTGTGAACT chr9:132102984-132103484 - 50 1.89e-07 CTGTTTTCCA CTTTCTTGGTTTACTCTCTCATTTTGA TGGAGCACGT chr19:37595004-37595504 + 2 2.41e-07 t gtgtgtgtgcgtgtgtgtgtgggtctg tgcgcgcgcg chr1:24043485-24043985 + 4 3.44e-07 gaa atTATTGTGCtttcttgtttatttttt tttgagacag chr14:98913877-98914377 - 41 3.86e-07 TTCCTCCCTC CCTTCTTTGTTTCTTTCCTTCCTTCGT TCTTCTCTCC chr22:44515724-44516224 + 45 4.34e-07 tctgccttct ttcttttggtttatgtcattgtttagt ggtgaaaacg chrUn_KI270467v1:2951-34 + 58 4.87e-07 gtatataata tttattttgtgtcctttgatattttat gtacagtata chr8:37494262-37494762 + 33 4.87e-07 gtgtgagctt gtgtgtgtgagtgtgtcagagtgtgtg tagtgtgtga chr1:181136324-181136824 - 27 5.45e-07 AGTGTCTGTG TGTCTGTGGTGTGTCTTTGTGTGTGTG GTGTGTCTAT chr3:52243319-52243819 - 62 6.11e-07 TTAAGCCTAT GTCTCTTGGTTTACTCCCTCATTTTGC TGAAGTGCAT chr3:16331541-16332041 + 20 6.11e-07 GGTATGttct ctttttttggtttccttctcattttgc aggagcacat chr6:24720296-24720796 - 14 6.11e-07 AACTCCCCAT CTTTCTCTTTGTTTTTCCTCTTTTTCT TTTTCTCTCC chr17:45127504-45128004 + 64 6.11e-07 gtgcgtgaga cagtgtgtgtgtatgagtgtgagtgaa tgtgtgtgag chr13:114134039-11413453 - 68 6.11e-07 GTGTGT GTGTGTTTGTGTATGTTCACGTAGGTG TGTGTATGTA chr3:15098545-15099045 - 10 6.83e-07 TCCCGAGCGG TTGTGTTTGATTCTCTGGTTGTGTAAA GCTGAAGCG chr17:2974278-2974778 - 21 7.64e-07 CTAATTAAAT CTTTTCTGGTTTTTCTTTTCTTTTGAC TGAAGTGTAT chr17:58658840-58659340 - 58 7.64e-07 GTTTAAAAGA CGGCTTGTGTGTTGTTGCGTGTGTTTA TTTTCAGAGT chr15:82310445-82310945 + 70 8.53e-07 tatgggcagg tacctttttttttttaatttgttttgg tgga chr21:42654849-42655349 - 44 8.53e-07 ATTGGAGCAT GTGTGTGTGTGTGTGAGTGTGCATGCT GGTGCAGTGA chr17:59776943-59777443 + 51 9.51e-07 ttgtcttcct ctttcttaatttacaccttcgttttgc ttgaacatat chr17:46265265-46265765 + 3 9.51e-07 tc cttcttcttcttctttctttttttttc ggttttgaga chr17:43315767-43316267 + 7 1.06e-06 TCCTAG CTTAGTGTGTGCGTTCTTTCTTTTTGT TTCTGAGAAT chrUn_KI270466v1:168-668 + 63 1.18e-06 gtacataata catattttgtgtactttgatattttat gtacagcata chr19:36851103-36851603 + 15 1.46e-06 GTGGCTGCTT CCGTGTGTGTGTGTGCGCGCGCGTTGG TGATATTGTT chr11:2828880-2829380 - 73 1.62e-06 T GGTTCTTGAATTGTGTTTCTCTTTCTT TGTTTTTTCC chr7:112202646-112203146 - 38 1.62e-06 TGAGGTGCTG GTTCCTCTCTTTCTCAATTTGTTTGAT TCTCTCTGGC chr7:5411429-5411929 - 45 1.80e-06 TTGCCTTCCC GTTTCCTGTTTTACTCCCTTCTTTCTG TAGAGCACAT chr14:103105041-10310554 + 12 1.80e-06 GTGTAGCAGA GTTGGGGGGTGTGTGTGCGTGTGTGAT GGAGCTGAGG chr14:99657540-99658040 - 4 1.80e-06 TATGTAGCAT ATGCATGTGTGTATGTGTGTTTGTGTG TGT chr16:57628762-57629262 + 64 2.00e-06 ctgagcgttt gagtgtgagagtgtgagtgagtgtgtg tgagtatgag chr5:109468638-109469138 - 29 2.21e-06 TGTCACTTAA CTGTGTTTATTTTACTTATTTTTTTTT TTATAGGCCA chr1:2940996-2941496 + 29 2.21e-06 gtcctggttt ctcctttggtttatccccttgatttgc tggaacacat chr10:91588353-91588853 + 67 2.21e-06 TTCTTTTCAG CGTGTTTTATGTACATCTGTGTGTTTT CCATTTT chr1:234723374-234723874 + 7 2.21e-06 ACACTG GGTACTGATTGTGTGTCTGTCTGTCTC AGGGAATACT chr19:5116254-5116754 - 37 2.71e-06 AACCCCATGG CTTTCTCGATTTACATCCTTGTTTAGC TGGAGCACAT chr7:157053064-157053564 + 27 2.71e-06 tgtatttcat gcttttctctttgtgaattcctttttc attttgctgg chr6:4692593-4693093 - 57 2.99e-06 GTGTCTGTCA CTTTCTTGCACTCCTTTGTTGTTTGGC TGGGGTGCAT chr1:167926639-167927139 - 58 2.99e-06 AATTTAGCCT AACCTGGAGTTTTTTTGTTTGTTTTTT AAGGCTTCCT chr14:24425684-24426184 - 59 3.30e-06 CAAGGTACAT TTGTTTTTCTTTATCTATGTAAGTAGG GAGGGGTGAG chr21:43659947-43660447 - 59 3.65e-06 GGTCTACTTT ATTTGCCTGTTTGCCTCCTTGCTTTAT TACTAATAGA chr12:31636683-31637183 + 14 4.02e-06 GCCATGCCTT TATTCTttggttggttggttggttggt tggttagttg chr19:47231494-47231994 - 68 4.43e-06 GATCAT CAGTGTGGGTGTTTCTGCAACTGTGTG TGGCCCTGTC chr6:26571521-26572021 + 47 4.43e-06 TATGATACGG GAGTGTGTTGTTAGCTGCTTATGTGTC AGCAAGATAT chr22:42615223-42615723 + 9 5.37e-06 TGTGGGGT GGTCGTGTTTTTTGTTTCTTGTTGGTA GGTGGTGAAT chr1:40691629-40692129 + 37 5.37e-06 TCCTGAGCAG AGGTGTGTGAGTGTGCGGGAGTTTCTG TGCGAGGGTG chr11:35868455-35868955 - 23 6.48e-06 TCGTGTTCCT TTTCTTCAGTTTACTCCTTCATTTTGA TGGAGCATAT chr10:21829945-21830445 + 69 6.48e-06 tctcactacc ctctctttttttctacattcaattttc ttctt chr1:237005561-237006061 - 8 6.48e-06 GACCCTCCCT CTCTCTCAATCTCCGTGTGTGTGTCTG TGTGTGT chr13:113921716-11392221 + 11 7.11e-06 tcccaggtct tcctctttattttctccttcattttgc tggagcacat chr17:58630749-58631249 - 5 7.11e-06 TCTGTTTTAT GTGTTTTGTTTTCCCTTGTCGAATTAG TCTT chr6:26157359-26157859 - 53 7.80e-06 TATTTTTCTG CAGTGTCGGTTTCTAATTTTCAGTTAT GTGGCAGTAG chr11:62841260-62841760 - 52 1.03e-05 TTCTTGTTGT TTGAGTTGGATTAGGTGTTTTTATCGC TAGTGTGTTG chr5:1799854-1800354 - 62 1.12e-05 AACATGTCCT CTTTCTCAGTTTGTTTTGACATTGGTA TTTGCCAGTT chr10:665550-666050 - 12 1.23e-05 ATTTCATCGG GTTCGTTTGATTGATGTGTTTTGTTTT GGGAAAGCGG chr21:45353586-45354086 - 54 1.23e-05 CTGTGTGCCT GTGCCTGTGTATATGTACCTGTGTGTA TGTGCCTGTG chrUn_KI270467v1:2038-25 + 54 1.46e-05 gtatacaata tatattttgggtactttgatattttat gtacagtatg chr16:87631023-87631523 + 23 1.46e-05 ctcatgtctt ctttcatggtttcctccctcatttggg tggagcacat chr19:45531345-45531845 + 7 1.46e-05 catcct ctttgttgaatttcattctagttttcc tggagtatat chrUn_KI270467v1:3150-36 + 26 1.46e-05 gtttacaata tatattttgggtactttgatattttat ggacagtata chr1:11908118-11908618 + 50 1.89e-05 CGGTTTTTCA GCTTTTCGCTTTGTTAAGGTATGTGAT ATCAATTGTA chr1:39147129-39147629 + 4 1.89e-05 ctt ttctttttccttctcttttcattttcc ttctcttttc chr16:11520982-11521482 - 58 2.06e-05 GCCTTTTAGT TTCTGTTGGAGTCTCATCTCATATTGT GATGCATTTT chr7:27145937-27146437 - 24 2.06e-05 TAAGAATGCT CATTCTGTTATTTTGCTTGTAATGGTT TTCCTATGAG chr8:25998396-25998896 + 15 2.24e-05 TTTCTGGGTT GTGTTTCAGAGTGTCATTTAATGTCAT TTTATGACTC chr19:35143735-35144235 - 24 2.44e-05 GAGTCCATCT ATTTGTCTTCCTGGGTCTTTGTATCTG TGACTCTGGA chr1:148522630-148523130 + 2 3.12e-05 G TTTTGTGGCTGTGTTCTGTCCGGTCAG TTGTTTCCGT chr11:9219015-9219515 - 10 3.12e-05 TGACGTGTCT TGGTGTGGGTCTGTTTTCATCCATTGT GCTAGATCC chr19:40624458-40624958 + 48 3.12e-05 gcTGATGAat tttattttattttattttatttttaat ttttaatttt chr17:58631367-58631867 - 17 4.66e-05 AGATGTTAAT AGTAGTTGGTTTCCTCATGTTTTTAAT TTTTGAGTAT chr1:27116180-27116680 - 7 4.66e-05 GGGCCTGGAT AGTGTTCAGTGTGTGAACTTTTTTTTT TCAAGA chr21:36700184-36700684 + 50 5.88e-05 tttgttttct ttccttttctgctttccttcctttctt tggaagttca chr19:36772176-36772676 - 59 5.88e-05 GTGTGACTTT GCGTGTCTGTGCAGTACCTTGTGTGCG TGAGTTGCAG chr17:7579664-7580164 - 45 5.88e-05 TGAGTGGTGG TTTTGTGGCTCTTGGTAGTCCTGTGGC TGGTTGTTCC chr11:62855521-62856021 - 67 6.35e-05 TTGTCTT TTTCTTTTATTTTCTTTTGAGCGATTG TGCGAACATA chr2:241219803-241220303 - 35 6.35e-05 TGATGAACAG ATGACTGAAAATGTTTTTTCATGTGTG TTTTTAACAG chr5:36816089-36816589 - 47 6.35e-05 ATTGCTTTTT CTTTCTCAATGTGTCCTTTAATAGTTT TCTCAGTGAA chr21:46323350-46323850 + 28 6.85e-05 GCATTCGGCG GGCTGGTGGCGTAGGATTTTGTTTCGG GTTCCCAGGG chr1:145280997-145281497 + 66 7.38e-05 tagggaacta cgttcgcgctttctcttggTGCTTCTG TGGTGCGA chr5:69521131-69521631 + 71 7.38e-05 attctctcac atgtctttatgcactcttgctagtgtt tgt chr17:48619857-48620357 + 39 7.95e-05 GCCTCCCGCC GTCTCTTGGATCAGTTCGTCCTTTCGT TGGAGGAGGG chr19:39411872-39412372 + 46 8.56e-05 TAGATGTTTT GGTTGGTTTATTAGATGTGTAAGTTTA TAAAAACTGA chr1:81126982-81127482 - 42 9.22e-05 CCCTATTTGC TGGTTCGTGGTTGTTCACTTCATTTAC TTTCTAATCC chr1:125179931-125180431 + 56 9.91e-05 TCCATTCGAT AATTCCGTTTTTTTCCGTTTGGTGTTG ATACCATTCG chr7:148921033-148921533 - 73 9.91e-05 T ACGTGTGTGAGTGTGTGTGCTGTGTGT GGGCAGAGTG chr1:234681925-234682425 + 63 1.15e-04 tggatgtgtt gtgtgggaatgtgtctgggtgaggtga gataatctgg chr16:965417-965917 - 43 1.23e-04 CCTTCCTGTT TGCTGGTGGATTCTCTTTTTGCTGGAG TGTATCCCCA chr2:165825014-165825514 + 6 1.42e-04 aacaa tatctttattctgttctcatgcttgat tgtggcttgg chr6:143264369-143264869 - 24 1.63e-04 TCAAGGAAAT GATCCTGAATCTGGGGCTTTGTTTGGA TTTCAATGGA chr5:110054230-110054730 + 65 1.74e-04 CTCTCTACTG CTGTCTTATGGTGCCTGGATGAATggc tgggagtca chr12:120292716-12029321 - 5 2.60e-04 CACCTGCAAG TTTACCTGTTTTAGTGATTTGCGTTTA TGAA chr21:38986151-38986651 - 44 4.58e-04 CTAACCTCAT GGTTTTGGATCCTTGTCCCTATGGTTG TGATCCTTCC chr12:57782541-57783041 + 65 5.83e-04 AGAGAGATGT CGCTGCTGCGGTCGCTGCGCGTGTTTC TGGTCGCGC chr19:43901994-43902494 + 71 1.08e-03 gaatgCCTGT GCGTTTTGTGTTTTCACTCTGTGACAT TGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTKTBTKTGTKTRTKTBTKTGTKTKKB MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16771178-16771678 1.3e-12 14_[-2]_59 chr12:57111956-57112456 3.9e-12 69_[-2]_4 chr9:94694129-94694629 3.9e-12 50_[+2]_23 chr7:128360872-128361372 3.9e-12 35_[-2]_38 chr1:156661312-156661812 3.9e-12 45_[+2]_28 chr1:33364158-33364658 3.9e-12 36_[-2]_37 chr6:26365273-26365773 3.9e-12 4_[+2]_69 chr12:1924592-1925092 3.9e-12 5_[+2]_68 chr1:28884835-28885335 3.9e-12 4_[-2]_69 chr21:41777447-41777947 3.9e-12 71_[-2]_2 chr17:29744665-29745165 3.9e-12 3_[+2]_70 chr5:93582530-93583030 8.3e-12 43_[+2]_30 chr5:139489128-139489628 4.3e-11 28_[+2]_45 chr7:155585424-155585924 5.3e-11 15_[+2]_58 chr5:154835314-154835814 6.6e-11 57_[+2]_16 chr1:28648549-28649049 8.1e-11 54_[+2]_19 chr19:32745569-32746069 1.2e-10 16_[+2]_57 chr3:136802535-136803035 1.5e-10 54_[+2]_19 chr9:129607206-129607706 1.8e-10 69_[+2]_4 chr14:104979720-10498022 1.8e-10 49_[-2]_24 chr10:132905209-13290570 2.2e-10 51_[+2]_22 chr1:235505116-235505616 2.2e-10 63_[+2]_10 chr17:43367557-43368057 3.3e-10 65_[-2]_8 chr1:225442672-225443172 3.9e-10 4_[-2]_69 chr17:7750228-7750728 6.8e-10 13_[+2]_60 chr15:40092243-40092743 8.2e-10 4_[-2]_69 chrX:41333479-41333979 1.2e-09 36_[-2]_37 chr15:78784712-78785212 1.2e-09 44_[-2]_29 chr12:47949112-47949612 1.2e-09 68_[+2]_5 chr12:56115991-56116491 1.6e-09 4_[-2]_69 chr6:28790424-28790924 2.3e-09 67_[-2]_6 chrX:53370803-53371303 5.1e-09 28_[-2]_45 chr19:30079163-30079663 6e-09 32_[+2]_41 chr1:154607548-154608048 6e-09 53_[-2]_20 chr21:45118028-45118528 6e-09 41_[+2]_32 chr1:16111720-16112220 6e-09 34_[-2]_39 chr21:44609146-44609646 7e-09 64_[-2]_9 chr17:76547577-76548077 7e-09 27_[-2]_46 chr17:49193338-49193838 9.5e-09 17_[-2]_56 chr6:44247022-44247522 1.3e-08 24_[+2]_49 chrX:23804519-23805019 1.7e-08 43_[+2]_30 chr11:124861701-12486220 2e-08 41_[-2]_32 chr17:4622337-4622837 2.6e-08 19_[+2]_54 chr15:77968455-77968955 2.6e-08 46_[+2]_27 chr19:32781232-32781732 3e-08 22_[+2]_51 chr6:26382572-26383072 3.5e-08 44_[-2]_29 chr11:120346978-12034747 6e-08 25_[+2]_48 chr21:45332356-45332856 6e-08 12_[+2]_61 chr2:240814231-240814731 6.8e-08 68_[-2]_5 chr8:41827591-41828091 8.9e-08 12_[-2]_61 chr1:21346291-21346791 1.1e-07 57_[+2]_16 chr1:53137709-53138209 1.3e-07 23_[+2]_50 chr19:1771079-1771579 1.5e-07 32_[+2]_41 chr22:43582368-43582868 1.5e-07 10_[-2]_63 chr1:24970832-24971332 1.7e-07 59_[+2]_14 chr9:132102984-132103484 1.9e-07 49_[-2]_24 chr19:37595004-37595504 2.4e-07 1_[+2]_72 chr1:24043485-24043985 3.4e-07 3_[+2]_70 chr14:98913877-98914377 3.9e-07 40_[-2]_33 chr22:44515724-44516224 4.3e-07 44_[+2]_29 chrUn_KI270467v1:2951-34 4.9e-07 57_[+2]_16 chr8:37494262-37494762 4.9e-07 32_[+2]_41 chr1:181136324-181136824 5.5e-07 26_[-2]_47 chr3:52243319-52243819 6.1e-07 61_[-2]_12 chr3:16331541-16332041 6.1e-07 19_[+2]_54 chr6:24720296-24720796 6.1e-07 13_[-2]_60 chr17:45127504-45128004 6.1e-07 63_[+2]_10 chr13:114134039-11413453 6.1e-07 67_[-2]_6 chr3:15098545-15099045 6.8e-07 9_[-2]_64 chr17:2974278-2974778 7.6e-07 20_[-2]_53 chr17:58658840-58659340 7.6e-07 57_[-2]_16 chr15:82310445-82310945 8.5e-07 69_[+2]_4 chr21:42654849-42655349 8.5e-07 43_[-2]_30 chr17:59776943-59777443 9.5e-07 50_[+2]_23 chr17:46265265-46265765 9.5e-07 2_[+2]_71 chr17:43315767-43316267 1.1e-06 6_[+2]_67 chrUn_KI270466v1:168-668 1.2e-06 62_[+2]_11 chr19:36851103-36851603 1.5e-06 14_[+2]_59 chr11:2828880-2829380 1.6e-06 72_[-2]_1 chr7:112202646-112203146 1.6e-06 37_[-2]_36 chr7:5411429-5411929 1.8e-06 44_[-2]_29 chr14:103105041-10310554 1.8e-06 11_[+2]_62 chr14:99657540-99658040 1.8e-06 3_[-2]_70 chr16:57628762-57629262 2e-06 63_[+2]_10 chr5:109468638-109469138 2.2e-06 28_[-2]_45 chr1:2940996-2941496 2.2e-06 28_[+2]_45 chr10:91588353-91588853 2.2e-06 66_[+2]_7 chr1:234723374-234723874 2.2e-06 6_[+2]_67 chr19:5116254-5116754 2.7e-06 36_[-2]_37 chr7:157053064-157053564 2.7e-06 26_[+2]_47 chr6:4692593-4693093 3e-06 56_[-2]_17 chr1:167926639-167927139 3e-06 57_[-2]_16 chr14:24425684-24426184 3.3e-06 58_[-2]_15 chr21:43659947-43660447 3.6e-06 58_[-2]_15 chr12:31636683-31637183 4e-06 13_[+2]_60 chr19:47231494-47231994 4.4e-06 67_[-2]_6 chr6:26571521-26572021 4.4e-06 46_[+2]_27 chr22:42615223-42615723 5.4e-06 8_[+2]_65 chr1:40691629-40692129 5.4e-06 36_[+2]_37 chr11:35868455-35868955 6.5e-06 22_[-2]_51 chr10:21829945-21830445 6.5e-06 68_[+2]_5 chr1:237005561-237006061 6.5e-06 7_[-2]_66 chr13:113921716-11392221 7.1e-06 10_[+2]_63 chr17:58630749-58631249 7.1e-06 4_[-2]_69 chr6:26157359-26157859 7.8e-06 52_[-2]_21 chr11:62841260-62841760 1e-05 51_[-2]_22 chr5:1799854-1800354 1.1e-05 61_[-2]_12 chr10:665550-666050 1.2e-05 11_[-2]_62 chr21:45353586-45354086 1.2e-05 53_[-2]_20 chrUn_KI270467v1:2038-25 1.5e-05 53_[+2]_20 chr16:87631023-87631523 1.5e-05 22_[+2]_51 chr19:45531345-45531845 1.5e-05 6_[+2]_67 chrUn_KI270467v1:3150-36 1.5e-05 25_[+2]_48 chr1:11908118-11908618 1.9e-05 49_[+2]_24 chr1:39147129-39147629 1.9e-05 3_[+2]_70 chr16:11520982-11521482 2.1e-05 57_[-2]_16 chr7:27145937-27146437 2.1e-05 23_[-2]_50 chr8:25998396-25998896 2.2e-05 14_[+2]_59 chr19:35143735-35144235 2.4e-05 23_[-2]_50 chr1:148522630-148523130 3.1e-05 1_[+2]_72 chr11:9219015-9219515 3.1e-05 9_[-2]_64 chr19:40624458-40624958 3.1e-05 47_[+2]_26 chr17:58631367-58631867 4.7e-05 16_[-2]_57 chr1:27116180-27116680 4.7e-05 6_[-2]_67 chr21:36700184-36700684 5.9e-05 49_[+2]_24 chr19:36772176-36772676 5.9e-05 58_[-2]_15 chr17:7579664-7580164 5.9e-05 44_[-2]_29 chr11:62855521-62856021 6.3e-05 66_[-2]_7 chr2:241219803-241220303 6.3e-05 34_[-2]_39 chr5:36816089-36816589 6.3e-05 46_[-2]_27 chr21:46323350-46323850 6.8e-05 27_[+2]_46 chr1:145280997-145281497 7.4e-05 65_[+2]_8 chr5:69521131-69521631 7.4e-05 70_[+2]_3 chr17:48619857-48620357 8e-05 38_[+2]_35 chr19:39411872-39412372 8.6e-05 45_[+2]_28 chr1:81126982-81127482 9.2e-05 41_[-2]_32 chr1:125179931-125180431 9.9e-05 55_[+2]_18 chr7:148921033-148921533 9.9e-05 72_[-2]_1 chr1:234681925-234682425 0.00011 62_[+2]_11 chr16:965417-965917 0.00012 42_[-2]_31 chr2:165825014-165825514 0.00014 5_[+2]_68 chr6:143264369-143264869 0.00016 23_[-2]_50 chr5:110054230-110054730 0.00017 64_[+2]_9 chr12:120292716-12029321 0.00026 4_[-2]_69 chr21:38986151-38986651 0.00046 43_[-2]_30 chr12:57782541-57783041 0.00058 64_[+2]_9 chr19:43901994-43902494 0.0011 70_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTKTBTKTGTKTRTKTBTKTGTKTKKB MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTKTBTKTGTKTRTKTBTKTGTKTKKB width=27 seqs=147 chrX:16771178-16771678 ( 15) GGGTTTTTGTTTGTTTGTTTGTTTTTT 1 chr12:57111956-57112456 ( 70) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr9:94694129-94694629 ( 51) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr7:128360872-128361372 ( 36) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr1:156661312-156661812 ( 46) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr1:33364158-33364658 ( 37) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr6:26365273-26365773 ( 5) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr12:1924592-1925092 ( 6) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr1:28884835-28885335 ( 5) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr21:41777447-41777947 ( 72) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr17:29744665-29745165 ( 4) GTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr5:93582530-93583030 ( 44) GTGTGTGTGTGTATGTGTGTGTGTGTG 1 chr5:139489128-139489628 ( 29) GTTTTTGTTTTTTTTTGCTTGTTTGTT 1 chr7:155585424-155585924 ( 16) GTTTGTGTGTTTATGTGTTTGTATGGG 1 chr5:154835314-154835814 ( 58) CTGACTTTTTTTGTTTTTTTGTTTTTT 1 chr1:28648549-28649049 ( 55) GATTCTGTGTGTGTTTTTTTTTTTTTT 1 chr19:32745569-32746069 ( 17) CATTCTGTGTGTGTGTGTGTGTGTGTG 1 chr3:136802535-136803035 ( 55) GAGTGTGTGTGTGTGTCTGTGTGTGTG 1 chr9:129607206-129607706 ( 70) TGGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr14:104979720-10498022 ( 50) CTGTGTGTGTGTCTGTGTGTGTGTGAG 1 chr10:132905209-13290570 ( 52) TTTTTTTGGTTTACTTCCTTGTTTTTC 1 chr1:235505116-235505616 ( 64) CGGTTTTTGTTTCTGCTTTTGTTTTTG 1 chr17:43367557-43368057 ( 66) TGTTGTGTATGTGTGTGTGTGTTTTTG 1 chr1:225442672-225443172 ( 5) CCGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr17:7750228-7750728 ( 14) CTTTTTTGGTTTACGCCTTTGTTTTGT 1 chr15:40092243-40092743 ( 5) GTGTGTGTGTGTGTGTGTGTGAGTCTG 1 chrX:41333479-41333979 ( 37) TTTTCGTTTTTTTTGTTTTTGTTTTTT 1 chr15:78784712-78785212 ( 45) CTTTTTTTTTTTTTTAATTTGTTTTGG 1 chr12:47949112-47949612 ( 69) GTTTTTTGTTTTGTTTTGTTTTGTTTT 1 chr12:56115991-56116491 ( 5) CTTTCTTTCTTTCTTTCTTTCTTTCTT 1 chr6:28790424-28790924 ( 68) TTTTTTTTTTTTCTTTCTTTCTTTCAG 1 chrX:53370803-53371303 ( 29) TTTTGTTTGTTTGCTTGTTCCATTGTT 1 chr19:30079163-30079663 ( 33) CTTTCTTGGTTTACACCTTTGTTTTGG 1 chr1:154607548-154608048 ( 54) GTGAGTGTGTGTGTGTGGGTGTGTGTC 1 chr21:45118028-45118528 ( 42) GTTTCTTGGATTCTATTTTTGTTTTGC 1 chr1:16111720-16112220 ( 35) CTTTGTGGGAGTGTGTGCTTTTGTGTG 1 chr21:44609146-44609646 ( 65) CTTTCTGGATTTATATCCTTGTTTTGG 1 chr17:76547577-76548077 ( 28) GTGTGTGTGTGTGTGAATGTGTGTCTC 1 chr17:49193338-49193838 ( 18) TTTTCTTTCTTTCTTTCTTTCTTTTAA 1 chr6:44247022-44247522 ( 25) TTGTTTTTGTTTTTTTCTGTCCTTTAG 1 chrX:23804519-23805019 ( 44) TTTTCTTTCTTTCTTTCCTTCTTTCTC 1 chr11:124861701-12486220 ( 42) GTGTGTGAGTGTGTGTGTGTGTGTTCA 1 chr17:4622337-4622837 ( 20) TTTTTTTAGTTTACTTTCTCATTTTGT 1 chr15:77968455-77968955 ( 47) CCTTTTTTTTTTTTTAATTTGTTTTGG 1 chr19:32781232-32781732 ( 23) CTTACTTGGTTTACTCCCTTGTTTTGG 1 chr6:26382572-26383072 ( 45) CATTCTCTTTTTCTTTCTTTCTTTCTT 1 chr11:120346978-12034747 ( 26) CTCTTTCTTTTTCTTTCTTTCTTTCTC 1 chr21:45332356-45332856 ( 13) GTGTCTGTGTGTGTGTCTCAGTGTGTC 1 chr2:240814231-240814731 ( 69) GTTTCTTGGTTTCCTGTCTTGTTTTGC 1 chr8:41827591-41828091 ( 13) GTGCGTGTGTGTATGTGGGTGTGTGCG 1 chr1:21346291-21346791 ( 58) GTGTGTTTGTGTGTCTGCTATATTTGG 1 chr1:53137709-53138209 ( 24) TCCTCTTGGTTTACTTCCTTGTTTTGC 1 chr19:1771079-1771579 ( 33) CTTTTTTTATTTACCTCCTCGTTTGAA 1 chr22:43582368-43582868 ( 11) GTTTCTTGATTTACATTCTTCTTTTGC 1 chr1:24970832-24971332 ( 60) GTGTGTGTGAGTGTGCATGTGTATGAG 1 chr9:132102984-132103484 ( 50) CTTTCTTGGTTTACTCTCTCATTTTGA 1 chr19:37595004-37595504 ( 2) GTGTGTGTGCGTGTGTGTGTGGGTCTG 1 chr1:24043485-24043985 ( 4) ATTATTGTGCTTTCTTGTTTATTTTTT 1 chr14:98913877-98914377 ( 41) CCTTCTTTGTTTCTTTCCTTCCTTCGT 1 chr22:44515724-44516224 ( 45) TTCTTTTGGTTTATGTCATTGTTTAGT 1 chrUn_KI270467v1:2951-34 ( 58) TTTATTTTGTGTCCTTTGATATTTTAT 1 chr8:37494262-37494762 ( 33) GTGTGTGTGAGTGTGTCAGAGTGTGTG 1 chr1:181136324-181136824 ( 27) TGTCTGTGGTGTGTCTTTGTGTGTGTG 1 chr3:52243319-52243819 ( 62) GTCTCTTGGTTTACTCCCTCATTTTGC 1 chr3:16331541-16332041 ( 20) CTTTTTTTGGTTTCCTTCTCATTTTGC 1 chr6:24720296-24720796 ( 14) CTTTCTCTTTGTTTTTCCTCTTTTTCT 1 chr17:45127504-45128004 ( 64) CAGTGTGTGTGTATGAGTGTGAGTGAA 1 chr13:114134039-11413453 ( 68) GTGTGTTTGTGTATGTTCACGTAGGTG 1 chr3:15098545-15099045 ( 10) TTGTGTTTGATTCTCTGGTTGTGTAAA 1 chr17:2974278-2974778 ( 21) CTTTTCTGGTTTTTCTTTTCTTTTGAC 1 chr17:58658840-58659340 ( 58) CGGCTTGTGTGTTGTTGCGTGTGTTTA 1 chr15:82310445-82310945 ( 70) TACCTTTTTTTTTTTAATTTGTTTTGG 1 chr21:42654849-42655349 ( 44) GTGTGTGTGTGTGTGAGTGTGCATGCT 1 chr17:59776943-59777443 ( 51) CTTTCTTAATTTACACCTTCGTTTTGC 1 chr17:46265265-46265765 ( 3) CTTCTTCTTCTTCTTTCTTTTTTTTTC 1 chr17:43315767-43316267 ( 7) CTTAGTGTGTGCGTTCTTTCTTTTTGT 1 chrUn_KI270466v1:168-668 ( 63) CATATTTTGTGTACTTTGATATTTTAT 1 chr19:36851103-36851603 ( 15) CCGTGTGTGTGTGTGCGCGCGCGTTGG 1 chr11:2828880-2829380 ( 73) GGTTCTTGAATTGTGTTTCTCTTTCTT 1 chr7:112202646-112203146 ( 38) GTTCCTCTCTTTCTCAATTTGTTTGAT 1 chr7:5411429-5411929 ( 45) GTTTCCTGTTTTACTCCCTTCTTTCTG 1 chr14:103105041-10310554 ( 12) GTTGGGGGGTGTGTGTGCGTGTGTGAT 1 chr14:99657540-99658040 ( 4) ATGCATGTGTGTATGTGTGTTTGTGTG 1 chr16:57628762-57629262 ( 64) GAGTGTGAGAGTGTGAGTGAGTGTGTG 1 chr5:109468638-109469138 ( 29) CTGTGTTTATTTTACTTATTTTTTTTT 1 chr1:2940996-2941496 ( 29) CTCCTTTGGTTTATCCCCTTGATTTGC 1 chr10:91588353-91588853 ( 67) CGTGTTTTATGTACATCTGTGTGTTTT 1 chr1:234723374-234723874 ( 7) GGTACTGATTGTGTGTCTGTCTGTCTC 1 chr19:5116254-5116754 ( 37) CTTTCTCGATTTACATCCTTGTTTAGC 1 chr7:157053064-157053564 ( 27) GCTTTTCTCTTTGTGAATTCCTTTTTC 1 chr6:4692593-4693093 ( 57) CTTTCTTGCACTCCTTTGTTGTTTGGC 1 chr1:167926639-167927139 ( 58) AACCTGGAGTTTTTTTGTTTGTTTTTT 1 chr14:24425684-24426184 ( 59) TTGTTTTTCTTTATCTATGTAAGTAGG 1 chr21:43659947-43660447 ( 59) ATTTGCCTGTTTGCCTCCTTGCTTTAT 1 chr12:31636683-31637183 ( 14) TATTCTTTGGTTGGTTGGTTGGTTGGT 1 chr19:47231494-47231994 ( 68) CAGTGTGGGTGTTTCTGCAACTGTGTG 1 chr6:26571521-26572021 ( 47) GAGTGTGTTGTTAGCTGCTTATGTGTC 1 chr22:42615223-42615723 ( 9) GGTCGTGTTTTTTGTTTCTTGTTGGTA 1 chr1:40691629-40692129 ( 37) AGGTGTGTGAGTGTGCGGGAGTTTCTG 1 chr11:35868455-35868955 ( 23) TTTCTTCAGTTTACTCCTTCATTTTGA 1 chr10:21829945-21830445 ( 69) CTCTCTTTTTTTCTACATTCAATTTTC 1 chr1:237005561-237006061 ( 8) CTCTCTCAATCTCCGTGTGTGTGTCTG 1 chr13:113921716-11392221 ( 11) TCCTCTTTATTTTCTCCTTCATTTTGC 1 chr17:58630749-58631249 ( 5) GTGTTTTGTTTTCCCTTGTCGAATTAG 1 chr6:26157359-26157859 ( 53) CAGTGTCGGTTTCTAATTTTCAGTTAT 1 chr11:62841260-62841760 ( 52) TTGAGTTGGATTAGGTGTTTTTATCGC 1 chr5:1799854-1800354 ( 62) CTTTCTCAGTTTGTTTTGACATTGGTA 1 chr10:665550-666050 ( 12) GTTCGTTTGATTGATGTGTTTTGTTTT 1 chr21:45353586-45354086 ( 54) GTGCCTGTGTATATGTACCTGTGTGTA 1 chrUn_KI270467v1:2038-25 ( 54) TATATTTTGGGTACTTTGATATTTTAT 1 chr16:87631023-87631523 ( 23) CTTTCATGGTTTCCTCCCTCATTTGGG 1 chr19:45531345-45531845 ( 7) CTTTGTTGAATTTCATTCTAGTTTTCC 1 chrUn_KI270467v1:3150-36 ( 26) TATATTTTGGGTACTTTGATATTTTAT 1 chr1:11908118-11908618 ( 50) GCTTTTCGCTTTGTTAAGGTATGTGAT 1 chr1:39147129-39147629 ( 4) TTCTTTTTCCTTCTCTTTTCATTTTCC 1 chr16:11520982-11521482 ( 58) TTCTGTTGGAGTCTCATCTCATATTGT 1 chr7:27145937-27146437 ( 24) CATTCTGTTATTTTGCTTGTAATGGTT 1 chr8:25998396-25998896 ( 15) GTGTTTCAGAGTGTCATTTAATGTCAT 1 chr19:35143735-35144235 ( 24) ATTTGTCTTCCTGGGTCTTTGTATCTG 1 chr1:148522630-148523130 ( 2) TTTTGTGGCTGTGTTCTGTCCGGTCAG 1 chr11:9219015-9219515 ( 10) TGGTGTGGGTCTGTTTTCATCCATTGT 1 chr19:40624458-40624958 ( 48) TTTATTTTATTTTATTTTATTTTTAAT 1 chr17:58631367-58631867 ( 17) AGTAGTTGGTTTCCTCATGTTTTTAAT 1 chr1:27116180-27116680 ( 7) AGTGTTCAGTGTGTGAACTTTTTTTTT 1 chr21:36700184-36700684 ( 50) TTCCTTTTCTGCTTTCCTTCCTTTCTT 1 chr19:36772176-36772676 ( 59) GCGTGTCTGTGCAGTACCTTGTGTGCG 1 chr17:7579664-7580164 ( 45) TTTTGTGGCTCTTGGTAGTCCTGTGGC 1 chr11:62855521-62856021 ( 67) TTTCTTTTATTTTCTTTTGAGCGATTG 1 chr2:241219803-241220303 ( 35) ATGACTGAAAATGTTTTTTCATGTGTG 1 chr5:36816089-36816589 ( 47) CTTTCTCAATGTGTCCTTTAATAGTTT 1 chr21:46323350-46323850 ( 28) GGCTGGTGGCGTAGGATTTTGTTTCGG 1 chr1:145280997-145281497 ( 66) CGTTCGCGCTTTCTCTTGGTGCTTCTG 1 chr5:69521131-69521631 ( 71) ATGTCTTTATGCACTCTTGCTAGTGTT 1 chr17:48619857-48620357 ( 39) GTCTCTTGGATCAGTTCGTCCTTTCGT 1 chr19:39411872-39412372 ( 46) GGTTGGTTTATTAGATGTGTAAGTTTA 1 chr1:81126982-81127482 ( 42) TGGTTCGTGGTTGTTCACTTCATTTAC 1 chr1:125179931-125180431 ( 56) AATTCCGTTTTTTTCCGTTTGGTGTTG 1 chr7:148921033-148921533 ( 73) ACGTGTGTGAGTGTGTGTGCTGTGTGT 1 chr1:234681925-234682425 ( 63) GTGTGGGAATGTGTCTGGGTGAGGTGA 1 chr16:965417-965917 ( 43) TGCTGGTGGATTCTCTTTTTGCTGGAG 1 chr2:165825014-165825514 ( 6) TATCTTTATTCTGTTCTCATGCTTGAT 1 chr6:143264369-143264869 ( 24) GATCCTGAATCTGGGGCTTTGTTTGGA 1 chr5:110054230-110054730 ( 65) CTGTCTTATGGTGCCTGGATGAATGGC 1 chr12:120292716-12029321 ( 5) TTTACCTGTTTTAGTGATTTGCGTTTA 1 chr21:38986151-38986651 ( 44) GGTTTTGGATCCTTGTCCCTATGGTTG 1 chr12:57782541-57783041 ( 65) CGCTGCTGCGGTCGCTGCGCGTGTTTC 1 chr19:43901994-43902494 ( 71) GCGTTTTGTGTTTTCACTCTGTGACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTKTBTKTGTKTRTKTBTKTGTKTKKB MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44400 bayes= 8.39178 E= 4.9e-223 -154 22 51 1 -87 -181 -88 146 -1384 -119 53 109 -122 -119 -369 168 -512 19 61 30 -512 -247 -210 190 -1384 -102 59 101 -104 -1384 12 134 -80 -147 117 -42 -80 -269 -210 168 -412 -227 66 113 -1384 -269 -1384 202 9 -52 59 -48 -354 -19 -147 146 -166 -63 48 71 -104 -57 -327 152 -112 1 34 30 -354 1 -88 127 -166 -295 34 123 -180 -41 -1384 163 -48 -81 110 -104 -122 -181 -295 174 -166 -1384 56 118 -412 -1384 -195 195 -254 -75 46 90 -37 -247 5 107 -122 -37 53 40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTKTBTKTGTKTRTKTBTKTGTKTKKB MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 147 E= 4.9e-223 0.081633 0.306122 0.374150 0.238095 0.129252 0.074830 0.142857 0.653061 0.000000 0.115646 0.380952 0.503401 0.102041 0.115646 0.020408 0.761905 0.006803 0.299320 0.401361 0.292517 0.006803 0.047619 0.061224 0.884354 0.000000 0.129252 0.394558 0.476190 0.115646 0.000000 0.285714 0.598639 0.136054 0.095238 0.591837 0.176871 0.136054 0.040816 0.061224 0.761905 0.013605 0.054422 0.414966 0.517007 0.000000 0.040816 0.000000 0.959184 0.251701 0.183673 0.394558 0.170068 0.020408 0.231293 0.095238 0.653061 0.074830 0.170068 0.367347 0.387755 0.115646 0.176871 0.027211 0.680272 0.108844 0.265306 0.333333 0.292517 0.020408 0.265306 0.142857 0.571429 0.074830 0.034014 0.333333 0.557823 0.068027 0.197279 0.000000 0.734694 0.170068 0.149660 0.564626 0.115646 0.102041 0.074830 0.034014 0.789116 0.074830 0.000000 0.387755 0.537415 0.013605 0.000000 0.068027 0.918367 0.040816 0.156463 0.360544 0.442177 0.183673 0.047619 0.272109 0.496599 0.102041 0.204082 0.380952 0.312925 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTKTBTKTGTKTRTKTBTKTGTKTKKB MEME-2 regular expression -------------------------------------------------------------------------------- [GCT]T[TG]T[GCT]T[TG][TG]GT[TG]T[GA][TC][TG]T[GTC][TC][TG]TGT[TG]T[TG][TG][GTC] -------------------------------------------------------------------------------- Time 1427.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CACATCCTBHAGTARCTTT MEME-3 width = 19 sites = 35 llr = 586 E-value = 3.7e-077 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACATCCTBHAGTARCTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9:9:::::281:93:::: pos.-specific C 7:9119a:341:1::8113 probability G :1:1::::3119:161::: matrix T 3:1:9::a43::9:11997 bits 2.1 1.9 * 1.7 * **** * 1.5 ******* *** ** Relative 1.2 ******* **** *** Entropy 1.0 ******** **** **** (24.2 bits) 0.8 ******** ********* 0.6 ******** ********* 0.4 ******** ********* 0.2 ********* ********* 0.0 ------------------- Multilevel CACATCCTTCAGTAGCTTT consensus T CT A C sequence GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATCCTBHAGTARCTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chr4:5715326-5715826 + 56 3.03e-12 atgcctggag cacatccttcagtagcttt ttcaaaaagg chr19:1771079-1771579 + 65 6.40e-12 ttgaatggaa cacatcctccagtagcttt ctgagaaagg chr21:44609146-44609646 - 41 2.71e-11 TTTGGTGGAG CACATCCTCCAGTAACTTT CTGAAAATGG chr15:77968455-77968955 + 79 3.56e-11 tttggtggag cacatcctcaagtagcttt ctg chr13:113921716-11392221 + 43 7.03e-11 tttgctggag cacatcctcaagtaacttt ctaaaataag chr19:30079163-30079663 + 65 2.07e-10 tttggtggtg cacatcctccagtggcttt ggaaaaaagg chr4:3736271-3736771 + 26 3.18e-10 cctgctggag cacatcctcaagtaacttc ctagcaacaa chr16:87631023-87631523 + 55 3.61e-10 ttgggtggag cacatcctggagtagcttc ctaagaaagg chr20:48806995-48807495 + 52 4.12e-10 acatctggtg cacatcctgcagtatcttt ctccacactc chr15:78784712-78785212 - 21 6.04e-10 TTTGGTGGAG CACATCCTCAAGCAGCTTT CTGAGAAAGA chr1:2940996-2941496 + 61 1.11e-09 tttgctggaa cacatacttcagtagcttt ctgagaaagg chr19:5116254-5116754 - 13 1.40e-09 TTAGCTGGAG CACATCCTGCAGCAGCTTC CTGAGAAAGG chr11:2828880-2829380 - 28 2.66e-09 TTTGCTAGAG CACGTCCTCAAGTAACTTT CTGAGAAAAG chr17:10077524-10078024 - 55 3.26e-09 TTTATTGGAT CACACCCTGCAGTAGCTTC CTGAAAAAGG chr7:5411429-5411929 - 21 3.91e-09 TTCTGTAGAG CACATCCTGCGGTGGCTTT CTGTGAAAGG chr9:132102984-132103484 - 26 4.30e-09 TTTGATGGAG CACGTCCTCTAGTAGCTTC TTGAGAAAAG chr2:200773039-200773539 - 20 4.77e-09 ACACCTGGTA TACATCCTGGAGTAGCCTT CTCAACCTTT chr3:16331541-16332041 + 52 7.59e-09 tttgcaggag cacatcctgtagtgactct ctaggcaaca chr19:32781232-32781732 + 55 9.20e-09 tttggtggag agcatcctttagtagcttt ctaggaaggg chr9:13648027-13648527 - 3 9.20e-09 CTTCCTGAAG CACATTCTTTAGTAGTTTT CT chr14:105331573-10533207 + 49 1.01e-08 TTTCCTGGAG CACATCCTTCAGaagctct ttcagtcttt chr16:56574579-56575079 + 58 1.59e-08 tttgctggag tacatcctcaagcaatttt ttaccaaaag chr19:707751-708251 + 52 2.25e-08 CAGCCTGGGG TACATCCTGCCGTATCTTT CTCCACAGCT chr17:78547014-78547514 + 17 4.69e-08 tatcctggaa tacatcctggaataggttt ctcaggaagg chr17:4622337-4622837 + 52 5.06e-08 tttgtgggtg cacatcctgcagtagccac ttaagagagg chrX:53370803-53371303 - 1 5.47e-08 TTTGATGGAG CACATCATCAAGTAAGTTT chr3:52243319-52243819 - 38 6.39e-08 TTTGCTGAAG TGCATCCTTCAACAACTTT CCAACAAAGG chr19:51314635-51315135 + 62 7.42e-08 GTGGCTGGAG TGCATCCTTCCATAGCTTT CTCTCACTTC chr2:240814231-240814731 - 45 7.98e-08 TTTGCTGGAG CACATCCTTGTGTGACTTC CTTGAAAGGG chr1:53137709-53138209 + 56 1.07e-07 tttgctgaaa catctcctttggtagcttt ctgagaaaga chr15:70149638-70150138 + 29 1.24e-07 ttggctgaag cacatcctatggtaatttc ctaaggaaag chr7:38964897-38965397 + 43 1.43e-07 tttcctgaag tacaccctttagtagccct ttcagcaagg chr17:65236276-65236776 + 36 2.32e-07 tgtactgaag tgcatcctttagtgattct ctcactgatg chr7:157053064-157053564 + 66 2.49e-07 tttgctggag caccaccttgagtaatttt ttcaagtctt chr17:7750228-7750728 + 46 5.68e-07 tttgttggtg tgtatccattagtagcttc ctaagaaatg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATCCTBHAGTARCTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:5715326-5715826 3e-12 55_[+3]_26 chr19:1771079-1771579 6.4e-12 64_[+3]_17 chr21:44609146-44609646 2.7e-11 40_[-3]_41 chr15:77968455-77968955 3.6e-11 78_[+3]_3 chr13:113921716-11392221 7e-11 42_[+3]_39 chr19:30079163-30079663 2.1e-10 64_[+3]_17 chr4:3736271-3736771 3.2e-10 25_[+3]_56 chr16:87631023-87631523 3.6e-10 54_[+3]_27 chr20:48806995-48807495 4.1e-10 51_[+3]_30 chr15:78784712-78785212 6e-10 20_[-3]_61 chr1:2940996-2941496 1.1e-09 60_[+3]_21 chr19:5116254-5116754 1.4e-09 12_[-3]_69 chr11:2828880-2829380 2.7e-09 27_[-3]_54 chr17:10077524-10078024 3.3e-09 54_[-3]_27 chr7:5411429-5411929 3.9e-09 20_[-3]_61 chr9:132102984-132103484 4.3e-09 25_[-3]_56 chr2:200773039-200773539 4.8e-09 19_[-3]_62 chr3:16331541-16332041 7.6e-09 51_[+3]_30 chr19:32781232-32781732 9.2e-09 54_[+3]_27 chr9:13648027-13648527 9.2e-09 2_[-3]_79 chr14:105331573-10533207 1e-08 48_[+3]_33 chr16:56574579-56575079 1.6e-08 57_[+3]_24 chr19:707751-708251 2.3e-08 51_[+3]_30 chr17:78547014-78547514 4.7e-08 16_[+3]_65 chr17:4622337-4622837 5.1e-08 51_[+3]_30 chrX:53370803-53371303 5.5e-08 [-3]_81 chr3:52243319-52243819 6.4e-08 37_[-3]_44 chr19:51314635-51315135 7.4e-08 61_[+3]_20 chr2:240814231-240814731 8e-08 44_[-3]_37 chr1:53137709-53138209 1.1e-07 55_[+3]_26 chr15:70149638-70150138 1.2e-07 28_[+3]_53 chr7:38964897-38965397 1.4e-07 42_[+3]_39 chr17:65236276-65236776 2.3e-07 35_[+3]_46 chr7:157053064-157053564 2.5e-07 65_[+3]_16 chr17:7750228-7750728 5.7e-07 45_[+3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATCCTBHAGTARCTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACATCCTBHAGTARCTTT width=19 seqs=35 chr4:5715326-5715826 ( 56) CACATCCTTCAGTAGCTTT 1 chr19:1771079-1771579 ( 65) CACATCCTCCAGTAGCTTT 1 chr21:44609146-44609646 ( 41) CACATCCTCCAGTAACTTT 1 chr15:77968455-77968955 ( 79) CACATCCTCAAGTAGCTTT 1 chr13:113921716-11392221 ( 43) CACATCCTCAAGTAACTTT 1 chr19:30079163-30079663 ( 65) CACATCCTCCAGTGGCTTT 1 chr4:3736271-3736771 ( 26) CACATCCTCAAGTAACTTC 1 chr16:87631023-87631523 ( 55) CACATCCTGGAGTAGCTTC 1 chr20:48806995-48807495 ( 52) CACATCCTGCAGTATCTTT 1 chr15:78784712-78785212 ( 21) CACATCCTCAAGCAGCTTT 1 chr1:2940996-2941496 ( 61) CACATACTTCAGTAGCTTT 1 chr19:5116254-5116754 ( 13) CACATCCTGCAGCAGCTTC 1 chr11:2828880-2829380 ( 28) CACGTCCTCAAGTAACTTT 1 chr17:10077524-10078024 ( 55) CACACCCTGCAGTAGCTTC 1 chr7:5411429-5411929 ( 21) CACATCCTGCGGTGGCTTT 1 chr9:132102984-132103484 ( 26) CACGTCCTCTAGTAGCTTC 1 chr2:200773039-200773539 ( 20) TACATCCTGGAGTAGCCTT 1 chr3:16331541-16332041 ( 52) CACATCCTGTAGTGACTCT 1 chr19:32781232-32781732 ( 55) AGCATCCTTTAGTAGCTTT 1 chr9:13648027-13648527 ( 3) CACATTCTTTAGTAGTTTT 1 chr14:105331573-10533207 ( 49) CACATCCTTCAGAAGCTCT 1 chr16:56574579-56575079 ( 58) TACATCCTCAAGCAATTTT 1 chr19:707751-708251 ( 52) TACATCCTGCCGTATCTTT 1 chr17:78547014-78547514 ( 17) TACATCCTGGAATAGGTTT 1 chr17:4622337-4622837 ( 52) CACATCCTGCAGTAGCCAC 1 chrX:53370803-53371303 ( 1) CACATCATCAAGTAAGTTT 1 chr3:52243319-52243819 ( 38) TGCATCCTTCAACAACTTT 1 chr19:51314635-51315135 ( 62) TGCATCCTTCCATAGCTTT 1 chr2:240814231-240814731 ( 45) CACATCCTTGTGTGACTTC 1 chr1:53137709-53138209 ( 56) CATCTCCTTTGGTAGCTTT 1 chr15:70149638-70150138 ( 29) CACATCCTATGGTAATTTC 1 chr7:38964897-38965397 ( 43) TACACCCTTTAGTAGCCCT 1 chr17:65236276-65236776 ( 36) TGCATCCTTTAGTGATTCT 1 chr7:157053064-157053564 ( 66) CACCACCTTGAGTAATTTT 1 chr17:7750228-7750728 ( 46) TGTATCCATTAGTAGCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATCCTBHAGTARCTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 49200 bayes= 11.8418 E= 3.7e-077 -305 144 -1177 12 185 -1177 -88 -1177 -1177 184 -1177 -205 190 -220 -220 -1177 -305 -220 -1177 195 -305 184 -1177 -305 -305 188 -1177 -1177 -305 -1177 -1177 203 -305 26 12 65 -24 60 -88 12 181 -220 -162 -305 -147 -1177 180 -1177 -305 -120 -1177 185 185 -1177 -88 -1177 53 -1177 119 -205 -1177 160 -220 -73 -1177 -162 -1177 195 -305 -120 -1177 185 -1177 -3 -1177 165 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATCCTBHAGTARCTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 35 E= 3.7e-077 0.028571 0.714286 0.000000 0.257143 0.857143 0.000000 0.142857 0.000000 0.000000 0.942857 0.000000 0.057143 0.885714 0.057143 0.057143 0.000000 0.028571 0.057143 0.000000 0.914286 0.028571 0.942857 0.000000 0.028571 0.028571 0.971429 0.000000 0.000000 0.028571 0.000000 0.000000 0.971429 0.028571 0.314286 0.285714 0.371429 0.200000 0.400000 0.142857 0.257143 0.828571 0.057143 0.085714 0.028571 0.085714 0.000000 0.914286 0.000000 0.028571 0.114286 0.000000 0.857143 0.857143 0.000000 0.142857 0.000000 0.342857 0.000000 0.600000 0.057143 0.000000 0.800000 0.057143 0.142857 0.000000 0.085714 0.000000 0.914286 0.028571 0.114286 0.000000 0.857143 0.000000 0.257143 0.000000 0.742857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATCCTBHAGTARCTTT MEME-3 regular expression -------------------------------------------------------------------------------- [CT]ACATCCT[TCG][CTA]AGTA[GA]CTT[TC] -------------------------------------------------------------------------------- Time 2048.56 secs. ******************************************************************************** ******************************************************************************** MOTIF BTCCCTYYCYCBCYCYYTCCYCYBCYYYCTC MEME-4 width = 31 sites = 100 llr = 1273 E-value = 8.6e-129 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTCCCTYYCYCBCYCYYTCCYCYBCYYYCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1::1:1:1:22211:11::1:1:111::1: pos.-specific C 5376715674737454517746536445737 probability G 21:1112112121:21111:11:21111::1 matrix T 3632173315141625472243552445363 bits 2.1 1.9 1.7 1.5 Relative 1.2 Entropy 1.0 * * (18.4 bits) 0.8 * * * * ** * * 0.6 ***** **** ** * *** ** **** 0.4 ****** **** ** ********** **** 0.2 *********** ******************* 0.0 ------------------------------- Multilevel CTCCCTCCCTCTCTCTCTCCTCCTCCTTCTC consensus TCTT TT C C CTCT TTCTTC TCCTCT sequence G G G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCCCTYYCYCBCYCYYTCCYCYBCYYYCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr19:31204071-31204571 + 29 1.88e-14 tttttctttc ctcccttcctccctctctccttttctttctt tccctttcct chr10:101229098-10122959 + 66 1.39e-13 tgttctcgct ctccctccctccctctctcttctctcttctc tgct chr5:93581808-93582308 + 62 1.01e-12 cctctcctct ctctctgtctctctctctcCTcctccccctt ttctctct chr6:28803334-28803834 - 45 2.47e-12 CTTTCCTTCC TTCCCTTCCTCCCTCTTTCTCCTTCCTTCCT TCCTTTCTCC chr12:1924592-1925092 - 40 3.07e-12 CTCTCTCTCT CTCGCTCTCTCTCTCTCTCTCTCTCTCTCTC TCACACACAC chr13:113157956-11315845 + 67 2.32e-11 TTTctccctc ctccctccctcccttccttttctccccttcc ttc chr7:76280911-76281411 + 5 2.80e-11 tttt ctctcttcctctttctcttctctgcctcctc cctctctccc chr1:155244630-155245130 - 10 5.84e-11 GCCGGCTCCT CTCTCTCTCTCTCTCTCTCTCGCTCGCTCTC TCGCTCTCT chr22:20496001-20496501 + 32 5.84e-11 cctttcctca ttcccttcttcactctcttctctcctctctt actccccccc chr17:48604595-48605095 + 34 6.99e-11 Ttctctccct ctccctctcgcgctctctctcttttctcctc acccccctct chr5:173327976-173328476 + 64 1.67e-10 TCCTTTGTGc tcccctcttcctcctcctcctcttcctcctt cgccgc chr7:128360872-128361372 + 4 1.97e-10 Cct gtctctctctctctctctctctctctctcac acacacacac chr7:104884054-104884554 + 6 2.75e-10 CTCTT CCCCCTTCCTCTTTCCTTCCACTTCGTTCTC TGTTTAGTTC chr17:49193338-49193838 - 70 2.75e-10 . CTCTGTCTCTCTCCCTCTCCTTTCCTCTTTC ACCAGCTACA chr1:39147129-39147629 + 62 4.47e-10 cttccccttc tttccttccttcccttttctttttccttctc ttttccct chr11:120346978-12034747 + 58 1.14e-09 ttctctctgt ctctctctgtttctctctctctctctctctc tGTCtgtgtg chr17:49575980-49576480 - 9 2.75e-09 TCAGTTGCAT CTTCCTCCTCCGCTCTCGTCCCCTCGCTCTC CCCTTCTC chrX:23804519-23805019 + 10 3.17e-09 ctttccttt ttcctttcccctttccttttctttctttctc tctttttctt chr9:130329729-130330229 + 12 3.17e-09 CACAGTGAGA CTTTCTGTCTGTCTGcttcctcctcccctcc cccccttccc chrX:25013838-25014338 + 6 4.21e-09 ttccg ttccctctctcactctcccccttttatttcc tatcttcctt chr17:67993798-67994298 - 66 4.83e-09 CAGC CTCCCCTTCCCTCTTCTTCCTTCTCGGCTTC CTCGGCTTTC chr13:43127489-43127989 + 52 4.83e-09 TGTTTTCACA CTTCCTTCCTCCATCTCTCCTGTGACTCTTT TTCTCTGAAT chr5:179623201-179623701 + 8 5.55e-09 GGCGGCG GCCGCTTCCGCTCCGCCTCCTCCGACTTCTC ACACAATAGA chr5:77644668-77645168 + 43 1.09e-08 CCATCGGTCC TCCCATCCGTCTCTCTTTCCCCTTTTCGCTC CTTTCCCTTT chr14:98913877-98914377 - 8 1.24e-08 TCCTTCGTTC TTCTCTCCCCCATCCTTTCTTCCTCTTTTAC ATCCTCC chr1:45521491-45521991 - 65 1.83e-08 CGGCG CGCCCTTCTTGCCTGTTGCCTCTTCCTCCTC CTGTCCGGGG chr6:26382572-26383072 - 8 2.68e-08 TCTTTCATAT GTCTCTCTCTCACTTTATTCTTTCTTTCTTT CTCGCTT chr17:38415510-38416010 + 56 2.68e-08 GGGCCTGCCA CCCGCCGCCCCCCTCCTTCCCTCTCATCTCC TTCCACTCCC chr14:90396944-90397444 + 51 3.03e-08 TGCAGCCACC CTCGCTCCCTCTGCTCTTCCTCCCTTCGCTC GCACCATGGT chr1:225442672-225443172 - 48 3.43e-08 GGGTGGCATC TTTTCTGCCTCCATTCTTCTTCTTCCTTACC ATTTTTTTTT chr17:7836691-7837191 + 67 3.88e-08 TCCAGTTCCA GTCCCGTGCCATCTCTTTCCCCTCTCCCTTC CCG chr17:7717633-7718133 - 15 3.88e-08 CTACTGCCCC TTCTCCCCAGCACTCCTTCCCTCCTTCCCTC TGCCCCCGAC chr10:42782505-42783005 + 10 5.57e-08 GAAAGCCGT CCCCATGCCGGTCTCTTTTTTCTGCCTTCTT GTTTCCCTCC chr12:56158184-56158684 - 60 5.57e-08 CTGCCTTCTC CTCGCCCCCCACCCGTCTCTTCCTGCCTCTC GTCCCCAATC chr17:7484246-7484746 + 70 7.06e-08 CCAAAAAcct tttccttttcccttctttttttttccttttT chr4:102827327-102827827 + 39 7.06e-08 CCAGCTGCCA CGCTCCGCCCCTCCCCCTCCTCCTGCCTCTT CACCGCCGCG chr14:22982922-22983422 - 2 7.94e-08 AGCTCTCCCT TTCTTTCGCTACCTCTTCCCTCTTCCACCTC T chr15:40092243-40092743 + 41 1.12e-07 cacCCTTGTG CGCCCGCCCGCTCTCCCTCCCCAGCATCTCC AGCTCGGTGC chr5:173274726-173275226 + 36 1.41e-07 tcttctgttg gttccttcttctcctgattctctgccttctt tgttttcctg chr1:40691629-40692129 - 67 1.41e-07 CCC CTCCCCCCGCCGCCGCTTCCCTATCACCCTC GCACAGAAAC chr1:225811779-225812279 - 1 1.41e-07 CAGTGAGGCC TTCCCTTTCCACCTGGCACTCCTCTCCCCTC chr12:120091304-12009180 - 55 1.96e-07 CTTCTTCCCT TCTCTTCCATCCCCTTTTCCACTTGCCCCTC AGAGCTGGCA chr17:45148366-45148866 - 4 3.74e-07 CTCTGCTCTG CTCAGTTCTCCTCCGCCTCCTCCTCTTTTCC TCC chr1:9201733-9202233 - 63 3.74e-07 CCAAGCC CCCCATCCCCATCTCCTTGCCCACCTACCCT CTGCGAAGGA chr17:46108178-46108678 + 68 5.66e-07 tctccaaata ccccctacacacctttctttcccgcttcctg gc chr6:31777121-31777621 - 1 6.93e-07 ACGCTGCTTA CTCCCTTCCTCCTCCCCAGCTCTCACTCACC chr1:51297533-51298033 + 3 6.93e-07 tg tctcctatctccctgctcccactcctgtccc ctgcaagcca chr17:81392983-81393483 + 19 8.46e-07 CCGGGAACCT TCCCCTCCCCTCCTTTCTCAAGCGCCATTTC TCCGGAGCCG chr1:109484009-109484509 + 16 9.33e-07 CGGGTCCTAG TGCCCGCCCGCTCCGTCACCTTCGCGCCTCC GGGTCCTAGC chr12:116595722-11659622 - 23 1.66e-06 CCATTCATCT GTCCATCCATCTATCCATCCACTCTTCCATC CATCTACCCT chrX:41333479-41333979 - 66 2.01e-06 TCGC TCCCCTTTCCAACTCTATGCACTCAGCTTTC GTTTTTCGTT chr19:35510114-35510614 + 44 2.01e-06 CAGATTCCAG TCCTCTTTCCAACCTCCAGACCTTCCCCCTC TTTAGCCTGT chr15:72230635-72231135 - 17 2.20e-06 CGCCGGCTCC TTTCCCGCCCCAGCCCTACCCCCTCATTCTG GTCCCATCCT chr1:185316891-185317391 - 11 2.20e-06 CCCGCGAGTT CTCGGTGGCGCTCCCCCTTCCTTTCAGTCTC CACGGACTGG chr17:8153920-8154420 + 49 2.20e-06 CCAGGCAGTC CTTGATCTCCCGCCTCCATCTCCCTGTCTTT TGCATAGACA chr5:5421711-5422211 + 2 2.41e-06 A GTTTATTCCTTTATCTTTCCGTTTTCTCTCT CTCCCGAGAA chr4:173168296-173168796 - 28 2.41e-06 GCCAGGCTGC CTTCCTCTCTACCTGCCCCCTTCCAGATCCG CAGTCCCCTG chr13:100238176-10023867 + 67 2.64e-06 GCACATCCTT TATGACTCctttctctttcctgtccttcttc taa chr10:102504283-10250478 - 63 2.89e-06 CACACAC CCCCAGTCCTCACTCTATTCTCCTAATCCCG GTTAACCCCT chr6:15956134-15956634 - 11 2.89e-06 TAAACTTCCA CTCCTGCTCTCAAACTTGCCTCCGTCTCTCC CTCTGCCTTA chr6:24774917-24775417 - 6 3.16e-06 TGCGCCTTGC GCCCCTGCGTACCCACTTCCTGCCGCCTCTT GCCCA chr10:93702441-93702941 - 41 3.16e-06 AGCCTCTTCG TCCCTTTCCGGGCCGTTTCTCCCGCTGCCCT TGTTTCCCGG chr21:36700184-36700684 + 4 3.46e-06 tcc ctccctccttccttccttcctttgccaatgc attggtttgt chr1:204516438-204516938 - 15 3.46e-06 CATCCCACAA CTCTTCCCCTCCCCCCGAGCCCTTCTTCCGC CTGGCGCGGC chr1:235505116-235505616 - 21 3.46e-06 CCATAGCCCA GCCGCTCGTTCTCATCCTTCTCTCCCATCCT CACCCCAGTG chr12:49130968-49131468 + 67 3.78e-06 GGGCCCCAGC GCCCCGCCGGCTCGCTTTTCCCTGCTTCCCT GAA chr10:100655811-10065631 + 8 3.78e-06 tcctcct cttcctgcctcaaacctccatccttctctcc CTGGCCAGCG chr1:234373432-234373932 - 16 3.78e-06 GCAAGCCGAC CTCTCTGCCCGCCCACGTCCGGCTTCCTTTC GATGTCGACG chr13:52194238-52194738 + 20 3.78e-06 CTCTCCTCCG TTTCCGGTCTGGCTTGTTCCCCTCCCTTTGC TTTCCGGTGG chr6:24720296-24720796 - 57 4.13e-06 AGCGCAGGGC TTCCTTTCCCTTCCCCCTCCGCCGCCAGTAC CAATCCAACT chr17:44689840-44690340 + 50 4.13e-06 tcgcttcctc cacccgaccgagctgccttccCCGCGCTTTC GGGGGATGCT chr6:157323317-157323817 + 55 5.35e-06 GAGGAGAAAG GTTCCGCTACCGCCTCCTCCTGTGCAATCTG AAGAAGGGTC chr19:39436262-39436762 + 67 5.35e-06 CCTTTCAGTT TCCTCTTCCCAGAATGTTTCCCATCCTTCTC TCA chr6:33433001-33433501 - 11 5.35e-06 CCCACTCCAA CCTGCTGCCCCTGTATTTCCTGACCTTCCCT GACACCCTTC chr19:27793891-27794391 - 45 5.83e-06 CAACGTATCC GTACCTCCCTCAACGTATCCATACCTCCCTC AAGGTATCCG chr10:96129715-96130215 + 41 5.83e-06 ACCGAGCGCG GACCCTGCCGGCCTCCGTTCTCTTCCGCTTG TCTCAGGTAA chr9:137241129-137241629 + 3 5.83e-06 CT CCTGCTTCCccgccgccgccgccgccATCAT GAGGGAAATC chr9:92325199-92325699 + 68 6.35e-06 CTTTTCCGTC CTCCCACCTTCCCTGACGCCTCCGTCACCTC CC chr7:876872-877372 + 67 6.35e-06 CCTCGGCCGC CTCCCGCCTCGTCCTTCGGTCTCTGTCTCTC TCC chr17:41688757-41689257 + 12 8.16e-06 CCCCCCTGCC CGCCTTCTCccgccaccgccgccgccgccTT CCGCAGGCCG chr19:36837963-36838463 + 3 8.86e-06 CA GCTCCTGCATCAATTTCACTCTCGCATCCAC TGCTCCCATC chr15:72136189-72136689 + 27 8.86e-06 cttggctcca gtttatgtctctccactagtctttttttctt aaGAAGATCC chr19:38336463-38336963 - 56 8.86e-06 TGGTCTTGGT TTCTATTTCTCGCTTTGACAGTCCCCCTCTT AAGTTCCCCC chr7:105013073-105013573 + 41 8.86e-06 TCTTTTATTC TTTGGTCTCCCCCTTTTTTCTTCGAGATCAC TGTCTGTCCC chr1:149811963-149812463 + 62 9.62e-06 TCTCCTTGCG GCTGCGCTTGCGCTTCTTGCCGTCCTTCTTC TGCACTTT chr1:31937281-31937781 + 54 9.62e-06 CACACACCAT GTTCTCCCCCCACACTCACCCGCTCTTTACC ACACTCTCAA chr19:43777835-43778335 + 65 1.04e-05 TCTCTGGTGG TCCTCTCTACTTTTCCATTTCCTCTTCCCCC AAATC chr7:112450872-112451372 + 27 1.13e-05 CAGAGTTCCT TTCTCGGCGGCGATCTCGCCCGATCTCTCCC CGACCACGGG chr7:100570550-100571050 - 23 1.13e-05 TGCAGTGGTT GATCTTGGCTCACTGCAACCTCCGCTTCCCC GGTTCAAGCG chr22:21001773-21002273 + 42 1.13e-05 GGCCTGTCGG GTCCCCCCCGGCCCGTTGTCGCCCCAACCCC GTCCCAGCCG chr1:223329631-223330131 - 18 1.33e-05 CCATTCAGCC ATCCATCCATCCATCTGTCCATCTGTTCTTC CATTCATCCA chr7:131327938-131328438 - 62 1.33e-05 GCGCCCCG GATCCGCCACACACCTCGCCCCTTCTCCCTG GGCTCGCTCT chr1:155324828-155325328 + 48 1.44e-05 GGCCTCCTAG CGTCTTCCCTTTCCCACTCCTCCCAGGTCTT CTGATAGCCG chr2:27663622-27664122 - 5 1.44e-05 CGGTCTTTAC GTTCCTGTCCACGTCCCACTCTCCCAAGCTC CCAG chr19:39125844-39126344 - 56 1.55e-05 AAACTTTGCA CTCCCCTTCGCCACGCCCCCTTCGCTGGTTT GATCTCCGAC chr12:6613068-6613568 - 27 2.12e-05 TGCACCCTAG CCCCTTATACCACCGTCCTTCCCCTTCTCCC TGCATCCCAC chr7:102572209-102572709 + 37 2.65e-05 CGCGCACCTC GGCCCTCCGCAGCCGGCGTCACTTACTTCTC GCCCTCGAAG chr1:40257934-40258434 - 1 3.07e-05 CTTTCCGAGG GCCCCTACGCCGATACCCGCCCCCATCCCTC chr6:139374285-139374785 + 31 5.43e-05 TGCAAAGCGC TTCGCTGTCGCGATGTCGGCGCCGAGGTCTC GCAGCGGCCG chr13:51452572-51453072 + 16 8.15e-05 GCGCCCAGCC GTCTGTCTGTCGGTTCGTCCCCCCCGCCTCG GGGGTCCCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCCCTYYCYCBCYCYYTCCYCYBCYYYCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:31204071-31204571 1.9e-14 28_[+4]_41 chr10:101229098-10122959 1.4e-13 65_[+4]_4 chr5:93581808-93582308 1e-12 61_[+4]_8 chr6:28803334-28803834 2.5e-12 44_[-4]_25 chr12:1924592-1925092 3.1e-12 39_[-4]_30 chr13:113157956-11315845 2.3e-11 66_[+4]_3 chr7:76280911-76281411 2.8e-11 4_[+4]_65 chr1:155244630-155245130 5.8e-11 9_[-4]_60 chr22:20496001-20496501 5.8e-11 31_[+4]_38 chr17:48604595-48605095 7e-11 33_[+4]_36 chr5:173327976-173328476 1.7e-10 63_[+4]_6 chr7:128360872-128361372 2e-10 3_[+4]_66 chr7:104884054-104884554 2.7e-10 5_[+4]_64 chr17:49193338-49193838 2.7e-10 69_[-4] chr1:39147129-39147629 4.5e-10 61_[+4]_8 chr11:120346978-12034747 1.1e-09 57_[+4]_12 chr17:49575980-49576480 2.7e-09 8_[-4]_61 chrX:23804519-23805019 3.2e-09 9_[+4]_60 chr9:130329729-130330229 3.2e-09 11_[+4]_58 chrX:25013838-25014338 4.2e-09 5_[+4]_64 chr17:67993798-67994298 4.8e-09 65_[-4]_4 chr13:43127489-43127989 4.8e-09 51_[+4]_18 chr5:179623201-179623701 5.6e-09 7_[+4]_62 chr5:77644668-77645168 1.1e-08 42_[+4]_27 chr14:98913877-98914377 1.2e-08 7_[-4]_62 chr1:45521491-45521991 1.8e-08 64_[-4]_5 chr6:26382572-26383072 2.7e-08 7_[-4]_62 chr17:38415510-38416010 2.7e-08 55_[+4]_14 chr14:90396944-90397444 3e-08 50_[+4]_19 chr1:225442672-225443172 3.4e-08 47_[-4]_22 chr17:7836691-7837191 3.9e-08 66_[+4]_3 chr17:7717633-7718133 3.9e-08 14_[-4]_55 chr10:42782505-42783005 5.6e-08 9_[+4]_60 chr12:56158184-56158684 5.6e-08 59_[-4]_10 chr17:7484246-7484746 7.1e-08 69_[+4] chr4:102827327-102827827 7.1e-08 38_[+4]_31 chr14:22982922-22983422 7.9e-08 1_[-4]_68 chr15:40092243-40092743 1.1e-07 40_[+4]_29 chr5:173274726-173275226 1.4e-07 35_[+4]_34 chr1:40691629-40692129 1.4e-07 66_[-4]_3 chr1:225811779-225812279 1.4e-07 [-4]_69 chr12:120091304-12009180 2e-07 54_[-4]_15 chr17:45148366-45148866 3.7e-07 3_[-4]_66 chr1:9201733-9202233 3.7e-07 62_[-4]_7 chr17:46108178-46108678 5.7e-07 67_[+4]_2 chr6:31777121-31777621 6.9e-07 [-4]_69 chr1:51297533-51298033 6.9e-07 2_[+4]_67 chr17:81392983-81393483 8.5e-07 18_[+4]_51 chr1:109484009-109484509 9.3e-07 15_[+4]_54 chr12:116595722-11659622 1.7e-06 22_[-4]_47 chrX:41333479-41333979 2e-06 65_[-4]_4 chr19:35510114-35510614 2e-06 43_[+4]_26 chr15:72230635-72231135 2.2e-06 16_[-4]_53 chr1:185316891-185317391 2.2e-06 10_[-4]_59 chr17:8153920-8154420 2.2e-06 48_[+4]_21 chr5:5421711-5422211 2.4e-06 1_[+4]_68 chr4:173168296-173168796 2.4e-06 27_[-4]_42 chr13:100238176-10023867 2.6e-06 66_[+4]_3 chr10:102504283-10250478 2.9e-06 62_[-4]_7 chr6:15956134-15956634 2.9e-06 10_[-4]_59 chr6:24774917-24775417 3.2e-06 5_[-4]_64 chr10:93702441-93702941 3.2e-06 40_[-4]_29 chr21:36700184-36700684 3.5e-06 3_[+4]_66 chr1:204516438-204516938 3.5e-06 14_[-4]_55 chr1:235505116-235505616 3.5e-06 20_[-4]_49 chr12:49130968-49131468 3.8e-06 66_[+4]_3 chr10:100655811-10065631 3.8e-06 7_[+4]_62 chr1:234373432-234373932 3.8e-06 15_[-4]_54 chr13:52194238-52194738 3.8e-06 19_[+4]_50 chr6:24720296-24720796 4.1e-06 56_[-4]_13 chr17:44689840-44690340 4.1e-06 49_[+4]_20 chr6:157323317-157323817 5.4e-06 54_[+4]_15 chr19:39436262-39436762 5.4e-06 66_[+4]_3 chr6:33433001-33433501 5.4e-06 10_[-4]_59 chr19:27793891-27794391 5.8e-06 44_[-4]_25 chr10:96129715-96130215 5.8e-06 40_[+4]_29 chr9:137241129-137241629 5.8e-06 2_[+4]_67 chr9:92325199-92325699 6.3e-06 67_[+4]_2 chr7:876872-877372 6.3e-06 66_[+4]_3 chr17:41688757-41689257 8.2e-06 11_[+4]_58 chr19:36837963-36838463 8.9e-06 2_[+4]_67 chr15:72136189-72136689 8.9e-06 26_[+4]_43 chr19:38336463-38336963 8.9e-06 55_[-4]_14 chr7:105013073-105013573 8.9e-06 40_[+4]_29 chr1:149811963-149812463 9.6e-06 61_[+4]_8 chr1:31937281-31937781 9.6e-06 53_[+4]_16 chr19:43777835-43778335 1e-05 64_[+4]_5 chr7:112450872-112451372 1.1e-05 26_[+4]_43 chr7:100570550-100571050 1.1e-05 22_[-4]_47 chr22:21001773-21002273 1.1e-05 41_[+4]_28 chr1:223329631-223330131 1.3e-05 17_[-4]_52 chr7:131327938-131328438 1.3e-05 61_[-4]_8 chr1:155324828-155325328 1.4e-05 47_[+4]_22 chr2:27663622-27664122 1.4e-05 4_[-4]_65 chr19:39125844-39126344 1.6e-05 55_[-4]_14 chr12:6613068-6613568 2.1e-05 26_[-4]_43 chr7:102572209-102572709 2.7e-05 36_[+4]_33 chr1:40257934-40258434 3.1e-05 [-4]_69 chr6:139374285-139374785 5.4e-05 30_[+4]_39 chr13:51452572-51453072 8.2e-05 15_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCCCTYYCYCBCYCYYTCCYCYBCYYYCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTCCCTYYCYCBCYCYYTCCYCYBCYYYCTC width=31 seqs=100 chr19:31204071-31204571 ( 29) CTCCCTTCCTCCCTCTCTCCTTTTCTTTCTT 1 chr10:101229098-10122959 ( 66) CTCCCTCCCTCCCTCTCTCTTCTCTCTTCTC 1 chr5:93581808-93582308 ( 62) CTCTCTGTCTCTCTCTCTCCTCCTCCCCCTT 1 chr6:28803334-28803834 ( 45) TTCCCTTCCTCCCTCTTTCTCCTTCCTTCCT 1 chr12:1924592-1925092 ( 40) CTCGCTCTCTCTCTCTCTCTCTCTCTCTCTC 1 chr13:113157956-11315845 ( 67) CTCCCTCCCTCCCTTCCTTTTCTCCCCTTCC 1 chr7:76280911-76281411 ( 5) CTCTCTTCCTCTTTCTCTTCTCTGCCTCCTC 1 chr1:155244630-155245130 ( 10) CTCTCTCTCTCTCTCTCTCTCGCTCGCTCTC 1 chr22:20496001-20496501 ( 32) TTCCCTTCTTCACTCTCTTCTCTCCTCTCTT 1 chr17:48604595-48605095 ( 34) CTCCCTCTCGCGCTCTCTCTCTTTTCTCCTC 1 chr5:173327976-173328476 ( 64) TCCCCTCTTCCTCCTCCTCCTCTTCCTCCTT 1 chr7:128360872-128361372 ( 4) GTCTCTCTCTCTCTCTCTCTCTCTCTCTCAC 1 chr7:104884054-104884554 ( 6) CCCCCTTCCTCTTTCCTTCCACTTCGTTCTC 1 chr17:49193338-49193838 ( 70) CTCTGTCTCTCTCCCTCTCCTTTCCTCTTTC 1 chr1:39147129-39147629 ( 62) TTTCCTTCCTTCCCTTTTCTTTTTCCTTCTC 1 chr11:120346978-12034747 ( 58) CTCTCTCTGTTTCTCTCTCTCTCTCTCTCTC 1 chr17:49575980-49576480 ( 9) CTTCCTCCTCCGCTCTCGTCCCCTCGCTCTC 1 chrX:23804519-23805019 ( 10) TTCCTTTCCCCTTTCCTTTTCTTTCTTTCTC 1 chr9:130329729-130330229 ( 12) CTTTCTGTCTGTCTGCTTCCTCCTCCCCTCC 1 chrX:25013838-25014338 ( 6) TTCCCTCTCTCACTCTCCCCCTTTTATTTCC 1 chr17:67993798-67994298 ( 66) CTCCCCTTCCCTCTTCTTCCTTCTCGGCTTC 1 chr13:43127489-43127989 ( 52) CTTCCTTCCTCCATCTCTCCTGTGACTCTTT 1 chr5:179623201-179623701 ( 8) GCCGCTTCCGCTCCGCCTCCTCCGACTTCTC 1 chr5:77644668-77645168 ( 43) TCCCATCCGTCTCTCTTTCCCCTTTTCGCTC 1 chr14:98913877-98914377 ( 8) TTCTCTCCCCCATCCTTTCTTCCTCTTTTAC 1 chr1:45521491-45521991 ( 65) CGCCCTTCTTGCCTGTTGCCTCTTCCTCCTC 1 chr6:26382572-26383072 ( 8) GTCTCTCTCTCACTTTATTCTTTCTTTCTTT 1 chr17:38415510-38416010 ( 56) CCCGCCGCCCCCCTCCTTCCCTCTCATCTCC 1 chr14:90396944-90397444 ( 51) CTCGCTCCCTCTGCTCTTCCTCCCTTCGCTC 1 chr1:225442672-225443172 ( 48) TTTTCTGCCTCCATTCTTCTTCTTCCTTACC 1 chr17:7836691-7837191 ( 67) GTCCCGTGCCATCTCTTTCCCCTCTCCCTTC 1 chr17:7717633-7718133 ( 15) TTCTCCCCAGCACTCCTTCCCTCCTTCCCTC 1 chr10:42782505-42783005 ( 10) CCCCATGCCGGTCTCTTTTTTCTGCCTTCTT 1 chr12:56158184-56158684 ( 60) CTCGCCCCCCACCCGTCTCTTCCTGCCTCTC 1 chr17:7484246-7484746 ( 70) TTTCCTTTTCCCTTCTTTTTTTTTCCTTTTT 1 chr4:102827327-102827827 ( 39) CGCTCCGCCCCTCCCCCTCCTCCTGCCTCTT 1 chr14:22982922-22983422 ( 2) TTCTTTCGCTACCTCTTCCCTCTTCCACCTC 1 chr15:40092243-40092743 ( 41) CGCCCGCCCGCTCTCCCTCCCCAGCATCTCC 1 chr5:173274726-173275226 ( 36) GTTCCTTCTTCTCCTGATTCTCTGCCTTCTT 1 chr1:40691629-40692129 ( 67) CTCCCCCCGCCGCCGCTTCCCTATCACCCTC 1 chr1:225811779-225812279 ( 1) TTCCCTTTCCACCTGGCACTCCTCTCCCCTC 1 chr12:120091304-12009180 ( 55) TCTCTTCCATCCCCTTTTCCACTTGCCCCTC 1 chr17:45148366-45148866 ( 4) CTCAGTTCTCCTCCGCCTCCTCCTCTTTTCC 1 chr1:9201733-9202233 ( 63) CCCCATCCCCATCTCCTTGCCCACCTACCCT 1 chr17:46108178-46108678 ( 68) CCCCCTACACACCTTTCTTTCCCGCTTCCTG 1 chr6:31777121-31777621 ( 1) CTCCCTTCCTCCTCCCCAGCTCTCACTCACC 1 chr1:51297533-51298033 ( 3) TCTCCTATCTCCCTGCTCCCACTCCTGTCCC 1 chr17:81392983-81393483 ( 19) TCCCCTCCCCTCCTTTCTCAAGCGCCATTTC 1 chr1:109484009-109484509 ( 16) TGCCCGCCCGCTCCGTCACCTTCGCGCCTCC 1 chr12:116595722-11659622 ( 23) GTCCATCCATCTATCCATCCACTCTTCCATC 1 chrX:41333479-41333979 ( 66) TCCCCTTTCCAACTCTATGCACTCAGCTTTC 1 chr19:35510114-35510614 ( 44) TCCTCTTTCCAACCTCCAGACCTTCCCCCTC 1 chr15:72230635-72231135 ( 17) TTTCCCGCCCCAGCCCTACCCCCTCATTCTG 1 chr1:185316891-185317391 ( 11) CTCGGTGGCGCTCCCCCTTCCTTTCAGTCTC 1 chr17:8153920-8154420 ( 49) CTTGATCTCCCGCCTCCATCTCCCTGTCTTT 1 chr5:5421711-5422211 ( 2) GTTTATTCCTTTATCTTTCCGTTTTCTCTCT 1 chr4:173168296-173168796 ( 28) CTTCCTCTCTACCTGCCCCCTTCCAGATCCG 1 chr13:100238176-10023867 ( 67) TATGACTCCTTTCTCTTTCCTGTCCTTCTTC 1 chr10:102504283-10250478 ( 63) CCCCAGTCCTCACTCTATTCTCCTAATCCCG 1 chr6:15956134-15956634 ( 11) CTCCTGCTCTCAAACTTGCCTCCGTCTCTCC 1 chr6:24774917-24775417 ( 6) GCCCCTGCGTACCCACTTCCTGCCGCCTCTT 1 chr10:93702441-93702941 ( 41) TCCCTTTCCGGGCCGTTTCTCCCGCTGCCCT 1 chr21:36700184-36700684 ( 4) CTCCCTCCTTCCTTCCTTCCTTTGCCAATGC 1 chr1:204516438-204516938 ( 15) CTCTTCCCCTCCCCCCGAGCCCTTCTTCCGC 1 chr1:235505116-235505616 ( 21) GCCGCTCGTTCTCATCCTTCTCTCCCATCCT 1 chr12:49130968-49131468 ( 67) GCCCCGCCGGCTCGCTTTTCCCTGCTTCCCT 1 chr10:100655811-10065631 ( 8) CTTCCTGCCTCAAACCTCCATCCTTCTCTCC 1 chr1:234373432-234373932 ( 16) CTCTCTGCCCGCCCACGTCCGGCTTCCTTTC 1 chr13:52194238-52194738 ( 20) TTTCCGGTCTGGCTTGTTCCCCTCCCTTTGC 1 chr6:24720296-24720796 ( 57) TTCCTTTCCCTTCCCCCTCCGCCGCCAGTAC 1 chr17:44689840-44690340 ( 50) CACCCGACCGAGCTGCCTTCCCCGCGCTTTC 1 chr6:157323317-157323817 ( 55) GTTCCGCTACCGCCTCCTCCTGTGCAATCTG 1 chr19:39436262-39436762 ( 67) TCCTCTTCCCAGAATGTTTCCCATCCTTCTC 1 chr6:33433001-33433501 ( 11) CCTGCTGCCCCTGTATTTCCTGACCTTCCCT 1 chr19:27793891-27794391 ( 45) GTACCTCCCTCAACGTATCCATACCTCCCTC 1 chr10:96129715-96130215 ( 41) GACCCTGCCGGCCTCCGTTCTCTTCCGCTTG 1 chr9:137241129-137241629 ( 3) CCTGCTTCCCCGCCGCCGCCGCCGCCATCAT 1 chr9:92325199-92325699 ( 68) CTCCCACCTTCCCTGACGCCTCCGTCACCTC 1 chr7:876872-877372 ( 67) CTCCCGCCTCGTCCTTCGGTCTCTGTCTCTC 1 chr17:41688757-41689257 ( 12) CGCCTTCTCCCGCCACCGCCGCCGCCGCCTT 1 chr19:36837963-36838463 ( 3) GCTCCTGCATCAATTTCACTCTCGCATCCAC 1 chr15:72136189-72136689 ( 27) GTTTATGTCTCTCCACTAGTCTTTTTTTCTT 1 chr19:38336463-38336963 ( 56) TTCTATTTCTCGCTTTGACAGTCCCCCTCTT 1 chr7:105013073-105013573 ( 41) TTTGGTCTCCCCCTTTTTTCTTCGAGATCAC 1 chr1:149811963-149812463 ( 62) GCTGCGCTTGCGCTTCTTGCCGTCCTTCTTC 1 chr1:31937281-31937781 ( 54) GTTCTCCCCCCACACTCACCCGCTCTTTACC 1 chr19:43777835-43778335 ( 65) TCCTCTCTACTTTTCCATTTCCTCTTCCCCC 1 chr7:112450872-112451372 ( 27) TTCTCGGCGGCGATCTCGCCCGATCTCTCCC 1 chr7:100570550-100571050 ( 23) GATCTTGGCTCACTGCAACCTCCGCTTCCCC 1 chr22:21001773-21002273 ( 42) GTCCCCCCCGGCCCGTTGTCGCCCCAACCCC 1 chr1:223329631-223330131 ( 18) ATCCATCCATCCATCTGTCCATCTGTTCTTC 1 chr7:131327938-131328438 ( 62) GATCCGCCACACACCTCGCCCCTTCTCCCTG 1 chr1:155324828-155325328 ( 48) CGTCTTCCCTTTCCCACTCCTCCCAGGTCTT 1 chr2:27663622-27664122 ( 5) GTTCCTGTCCACGTCCCACTCTCCCAAGCTC 1 chr19:39125844-39126344 ( 56) CTCCCCTTCGCCACGCCCCCTTCGCTGGTTT 1 chr12:6613068-6613568 ( 27) CCCCTTATACCACCGTCCTTCCCCTTCTCCC 1 chr7:102572209-102572709 ( 37) GGCCCTCCGCAGCCGGCGTCACTTACTTCTC 1 chr1:40257934-40258434 ( 1) GCCCCTACGCCGATACCCGCCCCCATCCCTC 1 chr6:139374285-139374785 ( 31) TTCGCTGTCGCGATGTCGGCGCCGAGGTCTC 1 chr13:51452572-51453072 ( 16) GTCTGTCTGTCGGTTCGTCCCCCCCGCCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCCCTYYCYCBCYCYYTCCYCYBCYYYCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 9.84557 E= 8.6e-129 -456 77 -13 34 -224 -2 -191 139 -456 143 -1329 24 -456 124 -91 -4 -111 145 -239 -98 -456 -113 -102 164 -224 84 -40 24 -1329 124 -239 48 -124 139 -155 -98 -1329 45 -72 102 -66 137 -155 -157 -57 24 -55 56 -66 145 -239 -157 -224 41 -471 132 -198 93 -32 -4 -357 74 -239 105 -157 90 -213 64 -87 -172 -113 150 -1329 135 -139 -4 -257 145 -1329 2 -140 57 -172 89 -1329 119 -126 29 -176 87 -1329 92 -1329 24 -13 92 -111 128 -213 -32 -111 64 -102 56 -87 41 -155 86 -456 81 -239 102 -257 131 -1329 39 -198 9 -313 141 -1329 135 -172 8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCCCTYYCYCBCYCYYTCCYCYBCYYYCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 100 E= 8.6e-129 0.010000 0.450000 0.240000 0.300000 0.050000 0.260000 0.070000 0.620000 0.010000 0.710000 0.000000 0.280000 0.010000 0.620000 0.140000 0.230000 0.110000 0.720000 0.050000 0.120000 0.010000 0.120000 0.130000 0.740000 0.050000 0.470000 0.200000 0.280000 0.000000 0.620000 0.050000 0.330000 0.100000 0.690000 0.090000 0.120000 0.000000 0.360000 0.160000 0.480000 0.150000 0.680000 0.090000 0.080000 0.160000 0.310000 0.180000 0.350000 0.150000 0.720000 0.050000 0.080000 0.050000 0.350000 0.010000 0.590000 0.060000 0.500000 0.210000 0.230000 0.020000 0.440000 0.050000 0.490000 0.080000 0.490000 0.060000 0.370000 0.130000 0.080000 0.120000 0.670000 0.000000 0.670000 0.100000 0.230000 0.040000 0.720000 0.000000 0.240000 0.090000 0.390000 0.080000 0.440000 0.000000 0.600000 0.110000 0.290000 0.070000 0.480000 0.000000 0.450000 0.000000 0.310000 0.240000 0.450000 0.110000 0.640000 0.060000 0.190000 0.110000 0.410000 0.130000 0.350000 0.130000 0.350000 0.090000 0.430000 0.010000 0.460000 0.050000 0.480000 0.040000 0.650000 0.000000 0.310000 0.060000 0.280000 0.030000 0.630000 0.000000 0.670000 0.080000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCCCTYYCYCBCYCYYTCCYCYBCYYYCTC MEME-4 regular expression -------------------------------------------------------------------------------- [CTG][TC][CT][CT]CT[CTG][CT]C[TC]C[TC]C[TC][CTG][TC][CT]T[CT][CT][TC][CT][CT][TCG]C[CT][TC][TC][CT][TC][CT] -------------------------------------------------------------------------------- Time 2667.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACWCACASACACACA MEME-5 width = 20 sites = 36 llr = 511 E-value = 5.3e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACWCACASACACACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 17:727:6:9:9:8:718:7 pos.-specific C 8:9:716:9:9:519:9272 probability G 12:11111::::311:::1: matrix T 1112:133111121:31:11 bits 2.1 1.9 1.7 1.5 *** * Relative 1.2 * **** **** Entropy 1.0 ** **** **** (20.5 bits) 0.8 ****** **** ***** * 0.6 ************ ******* 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel CACACACACACACACACACA consensus TA TT G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACWCACASACACACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr12:57111956-57112456 + 2 8.85e-13 a cacacacacacacacacaca cGTGCAGGCA chr1:33364158-33364658 + 3 8.85e-13 Ga cacacacacacacacacaca cacttgcttt chr17:76547577-76548077 + 57 8.50e-12 acacacacaa cacacattcacacacacaca gacatacaca chr21:41777447-41777947 + 19 3.05e-10 cactcttaca cactcattcacacactcaca tgtgcacaca chr1:181136324-181136824 + 80 1.56e-09 acagacacac cacagacacacagacacacc a chr14:104979720-10498022 + 80 1.75e-09 cacacagaga cacacagacacatacacata g chr7:155585424-155585924 - 47 2.22e-09 CACATAAGCA CATAAACACACATACACACA TACACCCATA chr21:45332356-45332856 - 62 3.30e-09 CAAGCACACA GACACAGACACAGACACACA GATGCACCAA chr14:99657540-99658040 + 50 3.30e-09 atacacagca cacacatatacacacataca tatgcatgca chr16:57628762-57629262 - 3 4.65e-09 CACATTCTCA CTCACTCTCACACACTCACA CT chr21:45353586-45354086 + 6 4.65e-09 aggca cacagacacacaggcacaca ggcataggca chr6:26365273-26365773 - 34 7.42e-09 TGTGCACATG TACACATGTACACACACACA CACACACACA chr1:16111720-16112220 + 9 1.17e-08 cacacaca cacacactcactgtcacaca caaatccaca chr1:28884835-28885335 + 33 1.17e-08 cacacacaca cacacacacacacacTCTTA TCAGGCTGGG chr1:24970832-24971332 - 3 1.30e-08 TGCGTGCAGA CACGAACTCACACACACATA CA chr13:114134039-11413453 + 29 2.24e-08 atactaccca tacacatgcacagacataca cactaaacat chr17:45127504-45128004 - 41 2.48e-08 CACACTGTCT CACGCACACACACACTCCCC ACCTATGCAT chr19:32745569-32746069 - 80 4.13e-08 T CTCTCTCTCACACACACAGA ATAACCACAT chr8:41827591-41828091 + 51 4.57e-08 cacacatgca cacacgcatacatacaccca ctcacacacc chr8:37494262-37494762 - 61 6.17e-08 CACACACGGA CACTATCACACTCACACACT ACACACACTC chr14:103105041-10310554 - 78 1.32e-07 ACA CGCACACACACAGCCTCAGC TCTCCACGCA chr2:240814231-240814731 + 2 5.34e-07 g caaaaacactctcacacacc aaagactcat chr17:38881491-38881991 - 57 5.80e-07 CTCCCTGCAC ACCAAACTCACACACTCACT GGGTGGGCCC chr19:40090473-40090973 + 4 7.40e-07 TCA CGCACACACTCACAGTCCCC TCCGTCACTC chr19:36851103-36851603 - 57 8.69e-07 TCACAATGAC AACAAATTCACACGCACCCT CCATCAACAA chr19:36772176-36772676 + 28 1.61e-06 CCACACAAGT TGCACTTGCACAGCCACAGA CCTGCAACTC chr19:47231494-47231994 + 4 1.74e-06 AGA CGGAAATGCACAGACTCACT AACAGGGTCC chr21:42654849-42655349 + 80 1.87e-06 catgctccaa tgctcacacatccactcaca a chr8:25998396-25998896 - 54 2.51e-06 GCCCTGGTAA TACTCAGACACTTACAACCA GGGAGTCATA chr1:31937281-31937781 + 28 2.70e-06 GCCTCTGCCA CGCACCTTCTCACCGACACA CACCATGTTC chr1:21346291-21346791 - 13 2.90e-06 ATATAGCGGA GACACACACACAGCAACAAA CCTCAAATAT chr22:25486943-25487443 - 76 3.59e-06 ATCCA CACTCCCATTCAGTCACCCA CCCATCTGCC chr7:148921033-148921533 + 45 5.80e-06 ACACCTAAAT CTCAGCCTCACATGCATACA CTCTGCCcac chr10:15813390-15813890 - 75 6.63e-06 TTTCTT CATTCATTCATATACTCATT TATGAGCTTT chr13:98507154-98507654 - 68 8.61e-06 CTACTATCAA CACTAGGACAAATACTCAGA TTCCAGGCAA chr1:155127053-155127553 + 10 1.26e-05 CACACGTTA CACACTCGATCACACAAAGC GTTGCACTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACWCACASACACACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57111956-57112456 8.9e-13 1_[+5]_79 chr1:33364158-33364658 8.9e-13 2_[+5]_78 chr17:76547577-76548077 8.5e-12 56_[+5]_24 chr21:41777447-41777947 3.1e-10 18_[+5]_62 chr1:181136324-181136824 1.6e-09 79_[+5]_1 chr14:104979720-10498022 1.8e-09 79_[+5]_1 chr7:155585424-155585924 2.2e-09 46_[-5]_34 chr21:45332356-45332856 3.3e-09 61_[-5]_19 chr14:99657540-99658040 3.3e-09 49_[+5]_31 chr16:57628762-57629262 4.7e-09 2_[-5]_78 chr21:45353586-45354086 4.7e-09 5_[+5]_75 chr6:26365273-26365773 7.4e-09 33_[-5]_47 chr1:16111720-16112220 1.2e-08 8_[+5]_72 chr1:28884835-28885335 1.2e-08 32_[+5]_48 chr1:24970832-24971332 1.3e-08 2_[-5]_78 chr13:114134039-11413453 2.2e-08 28_[+5]_52 chr17:45127504-45128004 2.5e-08 40_[-5]_40 chr19:32745569-32746069 4.1e-08 79_[-5]_1 chr8:41827591-41828091 4.6e-08 50_[+5]_30 chr8:37494262-37494762 6.2e-08 60_[-5]_20 chr14:103105041-10310554 1.3e-07 77_[-5]_3 chr2:240814231-240814731 5.3e-07 1_[+5]_79 chr17:38881491-38881991 5.8e-07 56_[-5]_24 chr19:40090473-40090973 7.4e-07 3_[+5]_77 chr19:36851103-36851603 8.7e-07 56_[-5]_24 chr19:36772176-36772676 1.6e-06 27_[+5]_53 chr19:47231494-47231994 1.7e-06 3_[+5]_77 chr21:42654849-42655349 1.9e-06 79_[+5]_1 chr8:25998396-25998896 2.5e-06 53_[-5]_27 chr1:31937281-31937781 2.7e-06 27_[+5]_53 chr1:21346291-21346791 2.9e-06 12_[-5]_68 chr22:25486943-25487443 3.6e-06 75_[-5]_5 chr7:148921033-148921533 5.8e-06 44_[+5]_36 chr10:15813390-15813890 6.6e-06 74_[-5]_6 chr13:98507154-98507654 8.6e-06 67_[-5]_13 chr1:155127053-155127553 1.3e-05 9_[+5]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACWCACASACACACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACWCACASACACACA width=20 seqs=36 chr12:57111956-57112456 ( 2) CACACACACACACACACACA 1 chr1:33364158-33364658 ( 3) CACACACACACACACACACA 1 chr17:76547577-76548077 ( 57) CACACATTCACACACACACA 1 chr21:41777447-41777947 ( 19) CACTCATTCACACACTCACA 1 chr1:181136324-181136824 ( 80) CACAGACACACAGACACACC 1 chr14:104979720-10498022 ( 80) CACACAGACACATACACATA 1 chr7:155585424-155585924 ( 47) CATAAACACACATACACACA 1 chr21:45332356-45332856 ( 62) GACACAGACACAGACACACA 1 chr14:99657540-99658040 ( 50) CACACATATACACACATACA 1 chr16:57628762-57629262 ( 3) CTCACTCTCACACACTCACA 1 chr21:45353586-45354086 ( 6) CACAGACACACAGGCACACA 1 chr6:26365273-26365773 ( 34) TACACATGTACACACACACA 1 chr1:16111720-16112220 ( 9) CACACACTCACTGTCACACA 1 chr1:28884835-28885335 ( 33) CACACACACACACACTCTTA 1 chr1:24970832-24971332 ( 3) CACGAACTCACACACACATA 1 chr13:114134039-11413453 ( 29) TACACATGCACAGACATACA 1 chr17:45127504-45128004 ( 41) CACGCACACACACACTCCCC 1 chr19:32745569-32746069 ( 80) CTCTCTCTCACACACACAGA 1 chr8:41827591-41828091 ( 51) CACACGCATACATACACCCA 1 chr8:37494262-37494762 ( 61) CACTATCACACTCACACACT 1 chr14:103105041-10310554 ( 78) CGCACACACACAGCCTCAGC 1 chr2:240814231-240814731 ( 2) CAAAAACACTCTCACACACC 1 chr17:38881491-38881991 ( 57) ACCAAACTCACACACTCACT 1 chr19:40090473-40090973 ( 4) CGCACACACTCACAGTCCCC 1 chr19:36851103-36851603 ( 57) AACAAATTCACACGCACCCT 1 chr19:36772176-36772676 ( 28) TGCACTTGCACAGCCACAGA 1 chr19:47231494-47231994 ( 4) CGGAAATGCACAGACTCACT 1 chr21:42654849-42655349 ( 80) TGCTCACACATCCACTCACA 1 chr8:25998396-25998896 ( 54) TACTCAGACACTTACAACCA 1 chr1:31937281-31937781 ( 28) CGCACCTTCTCACCGACACA 1 chr1:21346291-21346791 ( 13) GACACACACACAGCAACAAA 1 chr22:25486943-25487443 ( 76) CACTCCCATTCAGTCACCCA 1 chr7:148921033-148921533 ( 45) CTCAGCCTCACATGCATACA 1 chr10:15813390-15813890 ( 75) CATTCATTCATATACTCATT 1 chr13:98507154-98507654 ( 68) CACTAGGACAAATACTCAGA 1 chr1:155127053-155127553 ( 10) CACACTCGATCACACAAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACWCACASACACACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 11.2461 E= 5.3e-037 -209 151 -224 -77 161 -324 -66 -151 -309 176 -324 -209 161 -1181 -224 -9 -9 140 -166 -1181 161 -166 -224 -77 -1181 122 -124 23 123 -1181 -92 37 -309 171 -1181 -109 186 -1181 -1181 -77 -309 180 -1181 -209 186 -324 -1181 -109 -1181 100 8 -29 166 -124 -166 -209 -309 180 -224 -1181 155 -1181 -1181 37 -209 171 -1181 -151 176 -66 -1181 -309 -309 146 -92 -109 155 -66 -1181 -77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACWCACASACACACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 36 E= 5.3e-037 0.055556 0.750000 0.055556 0.138889 0.722222 0.027778 0.166667 0.083333 0.027778 0.888889 0.027778 0.055556 0.722222 0.000000 0.055556 0.222222 0.222222 0.694444 0.083333 0.000000 0.722222 0.083333 0.055556 0.138889 0.000000 0.611111 0.111111 0.277778 0.555556 0.000000 0.138889 0.305556 0.027778 0.861111 0.000000 0.111111 0.861111 0.000000 0.000000 0.138889 0.027778 0.916667 0.000000 0.055556 0.861111 0.027778 0.000000 0.111111 0.000000 0.527778 0.277778 0.194444 0.750000 0.111111 0.083333 0.055556 0.027778 0.916667 0.055556 0.000000 0.694444 0.000000 0.000000 0.305556 0.055556 0.861111 0.000000 0.083333 0.805556 0.166667 0.000000 0.027778 0.027778 0.722222 0.138889 0.111111 0.694444 0.166667 0.000000 0.138889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACWCACASACACACA MEME-5 regular expression -------------------------------------------------------------------------------- CAC[AT][CA]A[CT][AT]CACA[CG]AC[AT]CACA -------------------------------------------------------------------------------- Time 3248.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GTARTCCCAGCWMYTYGGGAGGCYGARGCRG MEME-6 width = 31 sites = 12 llr = 341 E-value = 1.0e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTARTCCCAGCWMYTYGGGAGGCYGARGCRG MEME-6 Description -------------------------------------------------------------------------------- Simplified A 1:97::1:8::3511:21:9:1:1:93:26: pos.-specific C :11:1a8a::8145:52::1::93:::16:: probability G 8::31:1:3a1:1:1:799:a91:a17914a matrix T 19::8:::::16:485::1::::6::::2:: bits 2.1 1.9 * * * * * * 1.7 ** * * * ** ** * 1.5 ** * * * ****** ** * * Relative 1.2 ** ** *** * ****** ** * * Entropy 1.0 *********** ** ****** **** ** (41.0 bits) 0.8 ************ ** *********** ** 0.6 **************************** ** 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel GTAATCCCAGCTACTCGGGAGGCTGAGGCAG consensus G G ACT T C A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTARTCCCAGCWMYTYGGGAGGCYGARGCRG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr12:55829066-55829566 + 56 7.97e-18 gcgcgcacct gtagtcccagctactcgggaggctgaggcag aagaatcgct chr19:40403832-40404332 - 17 1.14e-16 GCTCACGCCT GTAATCCCAGCACTTTGGGAGGCCGAGGCGG GAGGATCCCT chr19:47132091-47132591 - 68 3.99e-16 CT GTAGTCCCAGCTACTTGGGAGGCTGAAGAGG GAATATCCCT chr19:44259344-44259844 - 65 1.24e-15 TGCCT GTAATCCCAGCTACTCCAGAGGCTGAGGCAG GAGAATTGCT chr3:169762960-169763460 + 36 1.94e-15 gctcacgcct gtaatcccagcactttgggaggcagaagcgg gcggatcacc chr1:11909088-11909588 + 69 3.02e-15 gcgcatgcct gtaatcacagccactcgggaggctgaggcag g chr10:74032216-74032716 + 24 3.37e-15 gctcatgcct ataatcccagcactttgggaggccgaagcag gcagattacc chr6:28724849-28725349 + 22 3.74e-15 gtgcatgcct gtaatcccagttactcggtaggctgaggcag gagaattgct chr2:218864139-218864639 - 31 1.04e-14 CCAGGCACCT GTAATCCCGGCTAATCAGGAGGCTGAGGTAG GAGAATCACT chr10:68798461-68798961 + 68 1.53e-14 gtttacgcct gtaatcccagcactgtgggaggccgaggtgg gt chr1:203305411-203305911 - 52 3.53e-11 GCTCGCTCAC GCAGCCCCGGGTCCTCAGGAGGCTGGAGAGG AAGCCCACGG chr1:185316891-185317391 - 54 1.63e-08 CGCCTGCTGC TTCGGCGCGGCTGTATCGGCGAGCGAGCGAG TTCCCGCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTARTCCCAGCWMYTYGGGAGGCYGARGCRG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:55829066-55829566 8e-18 55_[+6]_14 chr19:40403832-40404332 1.1e-16 16_[-6]_53 chr19:47132091-47132591 4e-16 67_[-6]_2 chr19:44259344-44259844 1.2e-15 64_[-6]_5 chr3:169762960-169763460 1.9e-15 35_[+6]_34 chr1:11909088-11909588 3e-15 68_[+6]_1 chr10:74032216-74032716 3.4e-15 23_[+6]_46 chr6:28724849-28725349 3.7e-15 21_[+6]_48 chr2:218864139-218864639 1e-14 30_[-6]_39 chr10:68798461-68798961 1.5e-14 67_[+6]_2 chr1:203305411-203305911 3.5e-11 51_[-6]_18 chr1:185316891-185317391 1.6e-08 53_[-6]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTARTCCCAGCWMYTYGGGAGGCYGARGCRG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTARTCCCAGCWMYTYGGGAGGCYGARGCRG width=31 seqs=12 chr12:55829066-55829566 ( 56) GTAGTCCCAGCTACTCGGGAGGCTGAGGCAG 1 chr19:40403832-40404332 ( 17) GTAATCCCAGCACTTTGGGAGGCCGAGGCGG 1 chr19:47132091-47132591 ( 68) GTAGTCCCAGCTACTTGGGAGGCTGAAGAGG 1 chr19:44259344-44259844 ( 65) GTAATCCCAGCTACTCCAGAGGCTGAGGCAG 1 chr3:169762960-169763460 ( 36) GTAATCCCAGCACTTTGGGAGGCAGAAGCGG 1 chr1:11909088-11909588 ( 69) GTAATCACAGCCACTCGGGAGGCTGAGGCAG 1 chr10:74032216-74032716 ( 24) ATAATCCCAGCACTTTGGGAGGCCGAAGCAG 1 chr6:28724849-28725349 ( 22) GTAATCCCAGTTACTCGGTAGGCTGAGGCAG 1 chr2:218864139-218864639 ( 31) GTAATCCCGGCTAATCAGGAGGCTGAGGTAG 1 chr10:68798461-68798961 ( 68) GTAATCCCAGCACTGTGGGAGGCCGAGGTGG 1 chr1:203305411-203305911 ( 52) GCAGCCCCGGGTCCTCAGGAGGCTGGAGAGG 1 chr1:185316891-185317391 ( 54) TTCGGCGCGGCTGTATCGGCGAGCGAGCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTARTCCCAGCWMYTYGGGAGGCYGARGCRG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 9.6121 E= 1.0e-040 -151 -1023 166 -151 -1023 -166 -1023 195 195 -166 -1023 -1023 149 -1023 34 -1023 -1023 -166 -166 181 -1023 193 -1023 -1023 -151 166 -166 -1023 -1023 193 -1023 -1023 166 -1023 -7 -1023 -1023 -1023 193 -1023 -1023 166 -166 -151 49 -166 -1023 130 108 66 -166 -1023 -151 93 -1023 81 -151 -1023 -166 181 -1023 93 -1023 108 -51 -66 134 -1023 -151 -1023 180 -1023 -1023 -1023 180 -151 195 -166 -1023 -1023 -1023 -1023 193 -1023 -151 -1023 180 -1023 -1023 180 -166 -1023 -151 34 -1023 130 -1023 -1023 193 -1023 195 -1023 -166 -1023 49 -1023 134 -1023 -1023 -166 180 -1023 -51 115 -166 -51 130 -1023 66 -1023 -1023 -1023 193 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTARTCCCAGCWMYTYGGGAGGCYGARGCRG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 12 E= 1.0e-040 0.083333 0.000000 0.833333 0.083333 0.000000 0.083333 0.000000 0.916667 0.916667 0.083333 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.083333 0.083333 0.833333 0.000000 1.000000 0.000000 0.000000 0.083333 0.833333 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.083333 0.083333 0.333333 0.083333 0.000000 0.583333 0.500000 0.416667 0.083333 0.000000 0.083333 0.500000 0.000000 0.416667 0.083333 0.000000 0.083333 0.833333 0.000000 0.500000 0.000000 0.500000 0.166667 0.166667 0.666667 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 0.916667 0.083333 0.916667 0.083333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.916667 0.083333 0.000000 0.083333 0.333333 0.000000 0.583333 0.000000 0.000000 1.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.083333 0.916667 0.000000 0.166667 0.583333 0.083333 0.166667 0.583333 0.000000 0.416667 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTARTCCCAGCWMYTYGGGAGGCYGARGCRG MEME-6 regular expression -------------------------------------------------------------------------------- GTA[AG]TCCC[AG]GC[TA][AC][CT]T[CT]GGGAGGC[TC]GA[GA]GC[AG]G -------------------------------------------------------------------------------- Time 3809.03 secs. ******************************************************************************** ******************************************************************************** MOTIF ARAARRARAGARARAA MEME-7 width = 16 sites = 70 llr = 746 E-value = 2.2e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAARRARAGARARAA MEME-7 Description -------------------------------------------------------------------------------- Simplified A 8697539683956378 pos.-specific C ::::1::::::1:::: probability G 24:335:326142522 matrix T ::::11:::1:1221: bits 2.1 1.9 1.7 * 1.5 * * * * Relative 1.2 * ** * * * * Entropy 1.0 **** * * * * (15.4 bits) 0.8 **** *** * ** 0.6 **** *** * * ** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel AAAAAGAAAGAAAGAA consensus GG GGA GGA GTA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARRARAGARARAA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr11:120346978-12034747 - 8 5.58e-10 AGAAAGAGAA AGAAAGAAAGAAAGAA AGGAAGG chr12:56150523-56151023 + 53 3.10e-09 CAAAAATGGG AAAAGGAAAGAAAAAA AATTACAAGA chr5:154835314-154835814 + 29 4.04e-08 CTCTTATTTT AGAAGGAAAGAGTGAA TTGTACACGT chr14:98913877-98914377 + 82 5.84e-08 gaggaaggga agaaaaaaggaaagaa ggg chr1:78620128-78620628 - 23 6.95e-08 TCCTCACTAG GAAGAGAAAGAAAGAA ACCTGAAACT chr1:39147129-39147629 - 36 8.27e-08 GAAGGGGAAG GAAAGGAAAGAGAAAA GAGAAGGAAA chr21:38986151-38986651 + 1 2.14e-07 . aaaaaaaaaaaaaGAG CACTAGAGCC chr1:161530974-161531474 - 16 2.87e-07 GGTTTTTCGT AGAAGGAAAGACAAAA ACCCTTGCGT chr6:28941368-28941868 + 16 3.32e-07 GAAACAAGGC AAAAGGAGAGAAATGA Aaggttccac chr6:26382572-26383072 + 73 3.32e-07 aagagaatga gaaaggaaagaaggaa gcaaggaagg chr6:28790424-28790924 + 25 3.82e-07 aactccgtca aaaaataaataaataa acaaaaTAAG chrX:23804519-23805019 - 72 4.38e-07 AAGGAAGGAA GGAGAGAGAGAGAGAA AGAGAAAGAA chr6:28803334-28803834 + 85 4.38e-07 aggaaggaaa ggagagagagagagaa chr7:76280911-76281411 - 41 4.38e-07 GACAGAGAGA AGAAAGAAAGAGGGAG AGAGGGAGGA chr19:31204071-31204571 - 10 5.02e-07 AAGGGAGGAA AGAAAAAAGGAAGGAA GAGAGGGAG chr5:93581808-93582308 - 37 5.02e-07 GAGAGGAGAG GAAAGGAAAGAGAGGA GAGAGGAGAG chr12:1924592-1925092 + 71 5.02e-07 agagagcgag agagagagagagagTA TGGGGAGGCA chr19:44206776-44207276 + 49 5.75e-07 aatataTTTT aaaattagagaaagaa tatgaggcct chr17:46163585-46164085 - 3 5.75e-07 TGTAATGTGA GAAGAAAAAGAGATAA TT chr3:136802535-136803035 + 84 8.47e-07 tgtgtgtgtg agagagagagacagaa a chr6:28719450-28719950 + 2 8.47e-07 C AAAGAGAAAGATTAAA TTATAATGTT chr2:200773039-200773539 + 83 9.58e-07 AGCAATCACT AGAAGGAGAAATAGAA GT chr10:132905209-13290570 - 35 1.08e-06 CCAAAAAAAA AAAAAAAAAGGAAAGA TATGTGGGAT chrX:25013838-25014338 - 84 1.22e-06 A AAAGGTAAGGAGAGAA AAGGAAGGGA chr5:77644668-77645168 - 82 1.55e-06 AGA AAAAGGGGAGAGAGAA AGGGAAAGGA chr19:32745569-32746069 + 46 1.55e-06 TGTGTGTGTG AGAGAGAAGGAGAGAG ACTGGCTGAT chr22:44515724-44516224 - 17 1.74e-06 AAGGCAGAAG AAAAAGAAGTAGGGAA TTCAACTTGA chr2:218864139-218864639 - 83 1.74e-06 CT AAAAAAAAAAAATTAG CTGGCATGGT chr11:2828880-2829380 + 54 1.95e-06 gtgctctagc aaaatgagaggaaaaa acaaagaaag chr17:10077524-10078024 + 81 1.95e-06 gtgatccaat aaaacaagggagaaaa ccaa chr10:101229098-10122959 - 1 2.18e-06 GAAAAAGGGA GAAAGGAGAGAGAAAG chr1:230145368-230145868 - 31 2.43e-06 TAAGAATCTC AAAAGGCAAAAGAAAA CCGTGTAAAT chr9:13648027-13648527 + 47 3.36e-06 aatggaatct aaaaggaagaaatgga gtgaaaaatg chr17:43367557-43368057 + 19 3.73e-06 CAATCCGGTT AGAAGCAAAGAAGTAA TACCACCCAC chr1:144551552-144552052 + 13 3.73e-06 TTTTGAAACC AGAAAAAAAGAAATca gggaaaagca chrX:16771178-16771678 + 58 3.73e-06 GACTGTCTCA AAAAACAAACAAAAAA CCCCCAACAA chr17:48604595-48605095 - 83 3.73e-06 AT AGAGCAAAAGAGAGAG AGGACGAGAG chr1:33350547-33351047 - 51 4.13e-06 TGAAAATTTG AAAAATAGAGGAGAAA GGGAGCTAAG chr17:70969496-70969996 - 61 4.57e-06 GAGTAGGGCC AGAAAGAAACAGTGGA TGTTCTCTTG chr17:2974278-2974778 + 67 5.05e-06 gaaagtgaca agaaatagataaaata tgttgataaa chr17:65236276-65236776 - 80 5.58e-06 TTTTT AAAACAAAAAAATAGA CTTTTCTCTC chr6:15956134-15956634 + 74 8.18e-06 cagcaggaac aaaacgaagtaaagta cacttggaag chr19:707751-708251 + 2 8.97e-06 T AAAAAGGGAGGAATAA AGAAAAGGTG chr22:20496001-20496501 - 12 8.97e-06 AGGGAATGAG GAAAGGAGAGGGAGGA TATGAGCGGG chr6:30707533-30708033 - 84 8.97e-06 G AGAGAGAAGTAGAGAG ACCAGTAGCA chr17:7484246-7484746 - 37 9.84e-06 TGGGGGAGGA AGAAGAAAAAGGGTAA CGAATAAATA chr13:43127489-43127989 - 1 9.84e-06 GAAGCTGGGG GAAAGGAGGAAAAGGA chr1:234977849-234978349 + 59 1.08e-05 GCCAGGCAGG AGAGAGAAAAAGTGGG AGAGACATTA chr11:35868455-35868955 + 82 1.08e-05 ccagcacagg ggaatgaaggagtaaa ctg chr10:75498496-75498996 + 53 1.18e-05 taaacactgg agagggagagGAATTA GCACAGGGTG chr2:63064157-63064657 + 85 1.18e-05 gtttattgag tgaatgaaAGAGTGAA chr19:40624458-40624958 - 76 1.29e-05 ATAAATAAT AAAACTAAAAATTAAA AATTAAAAAT chr1:11909088-11909588 + 30 1.40e-05 cgtctctact aaaaatacaaaaatta gccgggcagg chr5:173274726-173275226 - 16 1.53e-05 AGGAACCAAC AGAAGAGAAAAGTAAA CAGATTTCCC chr7:38964897-38965397 - 22 1.81e-05 GTGTACTTCA GGAAAAAGAAAGTTGA ACCCAGACTG chr6:44105147-44105647 + 57 1.96e-05 AGGACTTCGT AAAAAACAAAAATGAg gctaggcgcg chr22:42615223-42615723 - 49 2.31e-05 AGTAACGGAG AAAACAACGAAAAAAA CGCATTCACC chr17:49193338-49193838 + 2 2.31e-05 G Tgaaagagagaagaga ttaaaagaaa chr6:108699681-108700181 - 79 2.71e-05 GTTCAA AGAAGGAAGGACGATA TAACAGCTTT chr9:130329729-130330229 - 53 2.71e-05 CAGGAGAGGA AGAGGAAGAGGATGTA GGGAAGGGGG chrX:48573828-48574328 + 36 2.93e-05 ATGAGGTTAA AGAACTAGAAGGTGAA GGAGGTTAAC chr1:234723374-234723874 - 40 3.17e-05 TTCCACACAC GAAGAGCAAAAAAGTA TTCCCTGAGA chr14:73717207-73717707 - 81 3.42e-05 ACAC AGAGCAAGGGAGATTA AGGCAGTTCT chr5:1799854-1800354 + 14 3.42e-05 GGATATCCGC AACGAAAAAGAAATTA CAACCACTTA chr14:34539790-34540290 - 39 3.69e-05 CGTCTCTACT AAAAATACAAAATTAG CCGGGCGTGG chr19:28405799-28406299 - 4 3.98e-05 CAGTGGCAAT AATAATAAGGAAGGAA CGG chr15:72136189-72136689 - 85 4.28e-05 . AAGAAAAAATATATAA TAAGATGGCA chr6:30616773-30617273 + 45 5.71e-05 AAGGAACACA AGGGAGAAAGATGTAA TCAGTACGGG chr19:32781232-32781732 + 78 6.12e-05 agctttctag gaagggagacacaaaa cataaat chr1:44730758-44731258 - 66 7.52e-05 ACGGTGTTTA AAAATCAGATAGAAAG TTGTGTGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARRARAGARARAA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:120346978-12034747 5.6e-10 7_[-7]_77 chr12:56150523-56151023 3.1e-09 52_[+7]_32 chr5:154835314-154835814 4e-08 28_[+7]_56 chr14:98913877-98914377 5.8e-08 81_[+7]_3 chr1:78620128-78620628 7e-08 22_[-7]_62 chr1:39147129-39147629 8.3e-08 35_[-7]_49 chr21:38986151-38986651 2.1e-07 [+7]_84 chr1:161530974-161531474 2.9e-07 15_[-7]_69 chr6:28941368-28941868 3.3e-07 15_[+7]_69 chr6:26382572-26383072 3.3e-07 72_[+7]_12 chr6:28790424-28790924 3.8e-07 24_[+7]_60 chrX:23804519-23805019 4.4e-07 71_[-7]_13 chr6:28803334-28803834 4.4e-07 84_[+7] chr7:76280911-76281411 4.4e-07 40_[-7]_44 chr19:31204071-31204571 5e-07 9_[-7]_75 chr5:93581808-93582308 5e-07 36_[-7]_48 chr12:1924592-1925092 5e-07 70_[+7]_14 chr19:44206776-44207276 5.7e-07 48_[+7]_36 chr17:46163585-46164085 5.7e-07 2_[-7]_82 chr3:136802535-136803035 8.5e-07 83_[+7]_1 chr6:28719450-28719950 8.5e-07 1_[+7]_83 chr2:200773039-200773539 9.6e-07 82_[+7]_2 chr10:132905209-13290570 1.1e-06 34_[-7]_50 chrX:25013838-25014338 1.2e-06 83_[-7]_1 chr5:77644668-77645168 1.5e-06 81_[-7]_3 chr19:32745569-32746069 1.5e-06 45_[+7]_39 chr22:44515724-44516224 1.7e-06 16_[-7]_68 chr2:218864139-218864639 1.7e-06 82_[-7]_2 chr11:2828880-2829380 1.9e-06 53_[+7]_31 chr17:10077524-10078024 1.9e-06 80_[+7]_4 chr10:101229098-10122959 2.2e-06 [-7]_84 chr1:230145368-230145868 2.4e-06 30_[-7]_54 chr9:13648027-13648527 3.4e-06 46_[+7]_38 chr17:43367557-43368057 3.7e-06 18_[+7]_66 chr1:144551552-144552052 3.7e-06 12_[+7]_72 chrX:16771178-16771678 3.7e-06 57_[+7]_27 chr17:48604595-48605095 3.7e-06 82_[-7]_2 chr1:33350547-33351047 4.1e-06 50_[-7]_34 chr17:70969496-70969996 4.6e-06 60_[-7]_24 chr17:2974278-2974778 5.1e-06 66_[+7]_18 chr17:65236276-65236776 5.6e-06 79_[-7]_5 chr6:15956134-15956634 8.2e-06 73_[+7]_11 chr19:707751-708251 9e-06 1_[+7]_83 chr22:20496001-20496501 9e-06 11_[-7]_73 chr6:30707533-30708033 9e-06 83_[-7]_1 chr17:7484246-7484746 9.8e-06 36_[-7]_48 chr13:43127489-43127989 9.8e-06 [-7]_84 chr1:234977849-234978349 1.1e-05 58_[+7]_26 chr11:35868455-35868955 1.1e-05 81_[+7]_3 chr10:75498496-75498996 1.2e-05 52_[+7]_32 chr2:63064157-63064657 1.2e-05 84_[+7] chr19:40624458-40624958 1.3e-05 75_[-7]_9 chr1:11909088-11909588 1.4e-05 29_[+7]_55 chr5:173274726-173275226 1.5e-05 15_[-7]_69 chr7:38964897-38965397 1.8e-05 21_[-7]_63 chr6:44105147-44105647 2e-05 56_[+7]_28 chr22:42615223-42615723 2.3e-05 48_[-7]_36 chr17:49193338-49193838 2.3e-05 1_[+7]_83 chr6:108699681-108700181 2.7e-05 78_[-7]_6 chr9:130329729-130330229 2.7e-05 52_[-7]_32 chrX:48573828-48574328 2.9e-05 35_[+7]_49 chr1:234723374-234723874 3.2e-05 39_[-7]_45 chr14:73717207-73717707 3.4e-05 80_[-7]_4 chr5:1799854-1800354 3.4e-05 13_[+7]_71 chr14:34539790-34540290 3.7e-05 38_[-7]_46 chr19:28405799-28406299 4e-05 3_[-7]_81 chr15:72136189-72136689 4.3e-05 84_[-7] chr6:30616773-30617273 5.7e-05 44_[+7]_40 chr19:32781232-32781732 6.1e-05 77_[+7]_7 chr1:44730758-44731258 7.5e-05 65_[-7]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARRARAGARARAA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAARRARAGARARAA width=16 seqs=70 chr11:120346978-12034747 ( 8) AGAAAGAAAGAAAGAA 1 chr12:56150523-56151023 ( 53) AAAAGGAAAGAAAAAA 1 chr5:154835314-154835814 ( 29) AGAAGGAAAGAGTGAA 1 chr14:98913877-98914377 ( 82) AGAAAAAAGGAAAGAA 1 chr1:78620128-78620628 ( 23) GAAGAGAAAGAAAGAA 1 chr1:39147129-39147629 ( 36) GAAAGGAAAGAGAAAA 1 chr21:38986151-38986651 ( 1) AAAAAAAAAAAAAGAG 1 chr1:161530974-161531474 ( 16) AGAAGGAAAGACAAAA 1 chr6:28941368-28941868 ( 16) AAAAGGAGAGAAATGA 1 chr6:26382572-26383072 ( 73) GAAAGGAAAGAAGGAA 1 chr6:28790424-28790924 ( 25) AAAAATAAATAAATAA 1 chrX:23804519-23805019 ( 72) GGAGAGAGAGAGAGAA 1 chr6:28803334-28803834 ( 85) GGAGAGAGAGAGAGAA 1 chr7:76280911-76281411 ( 41) AGAAAGAAAGAGGGAG 1 chr19:31204071-31204571 ( 10) AGAAAAAAGGAAGGAA 1 chr5:93581808-93582308 ( 37) GAAAGGAAAGAGAGGA 1 chr12:1924592-1925092 ( 71) AGAGAGAGAGAGAGTA 1 chr19:44206776-44207276 ( 49) AAAATTAGAGAAAGAA 1 chr17:46163585-46164085 ( 3) GAAGAAAAAGAGATAA 1 chr3:136802535-136803035 ( 84) AGAGAGAGAGACAGAA 1 chr6:28719450-28719950 ( 2) AAAGAGAAAGATTAAA 1 chr2:200773039-200773539 ( 83) AGAAGGAGAAATAGAA 1 chr10:132905209-13290570 ( 35) AAAAAAAAAGGAAAGA 1 chrX:25013838-25014338 ( 84) AAAGGTAAGGAGAGAA 1 chr5:77644668-77645168 ( 82) AAAAGGGGAGAGAGAA 1 chr19:32745569-32746069 ( 46) AGAGAGAAGGAGAGAG 1 chr22:44515724-44516224 ( 17) AAAAAGAAGTAGGGAA 1 chr2:218864139-218864639 ( 83) AAAAAAAAAAAATTAG 1 chr11:2828880-2829380 ( 54) AAAATGAGAGGAAAAA 1 chr17:10077524-10078024 ( 81) AAAACAAGGGAGAAAA 1 chr10:101229098-10122959 ( 1) GAAAGGAGAGAGAAAG 1 chr1:230145368-230145868 ( 31) AAAAGGCAAAAGAAAA 1 chr9:13648027-13648527 ( 47) AAAAGGAAGAAATGGA 1 chr17:43367557-43368057 ( 19) AGAAGCAAAGAAGTAA 1 chr1:144551552-144552052 ( 13) AGAAAAAAAGAAATCA 1 chrX:16771178-16771678 ( 58) AAAAACAAACAAAAAA 1 chr17:48604595-48605095 ( 83) AGAGCAAAAGAGAGAG 1 chr1:33350547-33351047 ( 51) AAAAATAGAGGAGAAA 1 chr17:70969496-70969996 ( 61) AGAAAGAAACAGTGGA 1 chr17:2974278-2974778 ( 67) AGAAATAGATAAAATA 1 chr17:65236276-65236776 ( 80) AAAACAAAAAAATAGA 1 chr6:15956134-15956634 ( 74) AAAACGAAGTAAAGTA 1 chr19:707751-708251 ( 2) AAAAAGGGAGGAATAA 1 chr22:20496001-20496501 ( 12) GAAAGGAGAGGGAGGA 1 chr6:30707533-30708033 ( 84) AGAGAGAAGTAGAGAG 1 chr17:7484246-7484746 ( 37) AGAAGAAAAAGGGTAA 1 chr13:43127489-43127989 ( 1) GAAAGGAGGAAAAGGA 1 chr1:234977849-234978349 ( 59) AGAGAGAAAAAGTGGG 1 chr11:35868455-35868955 ( 82) GGAATGAAGGAGTAAA 1 chr10:75498496-75498996 ( 53) AGAGGGAGAGGAATTA 1 chr2:63064157-63064657 ( 85) TGAATGAAAGAGTGAA 1 chr19:40624458-40624958 ( 76) AAAACTAAAAATTAAA 1 chr1:11909088-11909588 ( 30) AAAAATACAAAAATTA 1 chr5:173274726-173275226 ( 16) AGAAGAGAAAAGTAAA 1 chr7:38964897-38965397 ( 22) GGAAAAAGAAAGTTGA 1 chr6:44105147-44105647 ( 57) AAAAAACAAAAATGAG 1 chr22:42615223-42615723 ( 49) AAAACAACGAAAAAAA 1 chr17:49193338-49193838 ( 2) TGAAAGAGAGAAGAGA 1 chr6:108699681-108700181 ( 79) AGAAGGAAGGACGATA 1 chr9:130329729-130330229 ( 53) AGAGGAAGAGGATGTA 1 chrX:48573828-48574328 ( 36) AGAACTAGAAGGTGAA 1 chr1:234723374-234723874 ( 40) GAAGAGCAAAAAAGTA 1 chr14:73717207-73717707 ( 81) AGAGCAAGGGAGATTA 1 chr5:1799854-1800354 ( 14) AACGAAAAAGAAATTA 1 chr14:34539790-34540290 ( 39) AAAAATACAAAATTAG 1 chr19:28405799-28406299 ( 4) AATAATAAGGAAGGAA 1 chr15:72136189-72136689 ( 85) AAGAAAAAATATATAA 1 chr6:30616773-30617273 ( 45) AGGGAGAAAGATGTAA 1 chr19:32781232-32781732 ( 78) GAAGGGAGACACAAAA 1 chr1:44730758-44731258 ( 66) AAAATCAGATAGAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARRARAGARARAA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.3297 E= 2.2e-032 170 -1277 -39 -305 123 -1277 75 -1277 199 -420 -320 -405 162 -1277 5 -1277 108 -120 26 -173 20 -262 105 -73 195 -262 -262 -1277 137 -262 38 -1277 173 -1277 -30 -1277 12 -262 119 -124 188 -1277 -103 -1277 99 -220 60 -173 137 -1277 -74 -5 34 -1277 84 -5 153 -420 -74 -73 183 -1277 -74 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARRARAGARARAA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 70 E= 2.2e-032 0.771429 0.000000 0.200000 0.028571 0.557143 0.000000 0.442857 0.000000 0.942857 0.014286 0.028571 0.014286 0.728571 0.000000 0.271429 0.000000 0.500000 0.114286 0.314286 0.071429 0.271429 0.042857 0.542857 0.142857 0.914286 0.042857 0.042857 0.000000 0.614286 0.042857 0.342857 0.000000 0.785714 0.000000 0.214286 0.000000 0.257143 0.042857 0.600000 0.100000 0.871429 0.000000 0.128571 0.000000 0.471429 0.057143 0.400000 0.071429 0.614286 0.000000 0.157143 0.228571 0.300000 0.000000 0.471429 0.228571 0.685714 0.014286 0.157143 0.142857 0.842857 0.000000 0.157143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARRARAGARARAA MEME-7 regular expression -------------------------------------------------------------------------------- [AG][AG]A[AG][AG][GA]A[AG][AG][GA]A[AG][AT][GAT]AA -------------------------------------------------------------------------------- Time 4373.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGAGACAGRGTCTBGCTCTGTCRCCVAGG MEME-8 width = 31 sites = 9 llr = 240 E-value = 1.2e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGAGACAGRGTCTBGCTCTGTCRCCVAGG MEME-8 Description -------------------------------------------------------------------------------- Simplified A ::1:91927:6::::11:::1:1:6::271: pos.-specific C 1::::::81:::1a:329:a2217:874::1 probability G 1::9191:2a4a:::361:::8:13112289 matrix T 8a91::::::::9:a21:a:7:82112111: bits 2.1 * * * 1.9 * * * ** ** 1.7 ** * * ** ** 1.5 ****** * **** *** * Relative 1.2 ******* * **** *** * * Entropy 1.0 ******** ****** *** ** * ** (38.5 bits) 0.8 *************** ******* ** *** 0.6 *************** ********** *** 0.4 *************** ********** *** 0.2 *************** *************** 0.0 ------------------------------- Multilevel TTTGAGACAGAGTCTCGCTCTGTCACCCAGG consensus AG G GC CC TG TAG sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAGACAGRGTCTBGCTCTGTCRCCVAGG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr12:31636683-31637183 + 67 3.62e-16 tggttggctg gttgagacagagtcttgctctgtcgcccagg ctg chr7:100570550-100571050 - 66 6.42e-16 TTTT TTTGAGACAGAGTCTAGCTCTGTTACCTAGG AGTGCAGTGG chr15:66817926-66818426 + 19 2.42e-15 TAGttttttt tttgagacagagcctggctctgtcacccatg ctagagtgca chr1:24043485-24043985 + 31 2.42e-15 tttatttttt tttgagacagggtcttgctctgtcattgagg ctgcagtgca chr7:99375914-99376414 - 67 1.72e-14 TAT TTAGAGACGGAGTCTGGCTCTGTTGCCAAGG CTGCAGTGCA chr6:27235437-27235937 + 6 6.21e-12 cttct cttgagaaggagtctcactctgtctccaggc tggagtgcag chr5:139489128-139489628 + 60 2.65e-11 tttgtttgtt tttgagacagggtctgtctcccaggctggag tgcaatgaca chr12:57245177-57245677 + 10 3.44e-11 ttttttttt ttttgagacgggtctccctccgtcacccagg ctggagtgca chr17:46265265-46265765 + 33 3.82e-11 ttttttcggt tttgagacagggtctccgtcacccaggctgg agtgcagtgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAGACAGRGTCTBGCTCTGTCRCCVAGG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:31636683-31637183 3.6e-16 66_[+8]_3 chr7:100570550-100571050 6.4e-16 65_[-8]_4 chr15:66817926-66818426 2.4e-15 18_[+8]_51 chr1:24043485-24043985 2.4e-15 30_[+8]_39 chr7:99375914-99376414 1.7e-14 66_[-8]_3 chr6:27235437-27235937 6.2e-12 5_[+8]_64 chr5:139489128-139489628 2.6e-11 59_[+8]_10 chr12:57245177-57245677 3.4e-11 9_[+8]_60 chr17:46265265-46265765 3.8e-11 32_[+8]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAGACAGRGTCTBGCTCTGTCRCCVAGG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGAGACAGRGTCTBGCTCTGTCRCCVAGG width=31 seqs=9 chr12:31636683-31637183 ( 67) GTTGAGACAGAGTCTTGCTCTGTCGCCCAGG 1 chr7:100570550-100571050 ( 66) TTTGAGACAGAGTCTAGCTCTGTTACCTAGG 1 chr15:66817926-66818426 ( 19) TTTGAGACAGAGCCTGGCTCTGTCACCCATG 1 chr1:24043485-24043985 ( 31) TTTGAGACAGGGTCTTGCTCTGTCATTGAGG 1 chr7:99375914-99376414 ( 67) TTAGAGACGGAGTCTGGCTCTGTTGCCAAGG 1 chr6:27235437-27235937 ( 6) CTTGAGAAGGAGTCTCACTCTGTCTCCAGGC 1 chr5:139489128-139489628 ( 60) TTTGAGACAGGGTCTGTCTCCCAGGCTGGAG 1 chr12:57245177-57245677 ( 10) TTTTGAGACGGGTCTCCCTCCGTCACCCAGG 1 chr17:46265265-46265765 ( 33) TTTGAGACAGGGTCTCCGTCACCCAGGCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAGACAGRGTCTBGCTCTGTCRCCVAGG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 12.3222 E= 1.2e-014 -982 -124 -124 171 -982 -982 -982 208 -109 -982 -982 191 -982 -982 176 -109 191 -982 -124 -982 -109 -982 176 -982 191 -982 -124 -982 -9 156 -982 -982 149 -124 -24 -982 -982 -982 193 -982 123 -982 76 -982 -982 -982 193 -982 -982 -124 -982 191 -982 193 -982 -982 -982 -982 -982 208 -109 34 34 -9 -109 -24 108 -109 -982 176 -124 -982 -982 -982 -982 208 -982 193 -982 -982 -109 -24 -982 149 -982 -24 156 -982 -109 -124 -982 171 -982 134 -124 -9 123 -982 34 -109 -982 156 -124 -109 -982 134 -124 -9 -9 76 -24 -109 149 -982 -24 -109 -109 -982 156 -109 -982 -124 176 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAGACAGRGTCTBGCTCTGTCRCCVAGG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 9 E= 1.2e-014 0.000000 0.111111 0.111111 0.777778 0.000000 0.000000 0.000000 1.000000 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 0.888889 0.111111 0.888889 0.000000 0.111111 0.000000 0.111111 0.000000 0.888889 0.000000 0.888889 0.000000 0.111111 0.000000 0.222222 0.777778 0.000000 0.000000 0.666667 0.111111 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.555556 0.000000 0.444444 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.111111 0.333333 0.333333 0.222222 0.111111 0.222222 0.555556 0.111111 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.222222 0.000000 0.666667 0.000000 0.222222 0.777778 0.000000 0.111111 0.111111 0.000000 0.777778 0.000000 0.666667 0.111111 0.222222 0.555556 0.000000 0.333333 0.111111 0.000000 0.777778 0.111111 0.111111 0.000000 0.666667 0.111111 0.222222 0.222222 0.444444 0.222222 0.111111 0.666667 0.000000 0.222222 0.111111 0.111111 0.000000 0.777778 0.111111 0.000000 0.111111 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAGACAGRGTCTBGCTCTGTCRCCVAGG MEME-8 regular expression -------------------------------------------------------------------------------- TTTGAGA[CA][AG]G[AG]GTCT[CGT][GC]CTC[TC][GC]T[CT][AG]C[CT][CAG][AG]GG -------------------------------------------------------------------------------- Time 4911.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CCRGGCGCGGTGGCTBACGCCT MEME-9 width = 22 sites = 18 llr = 304 E-value = 1.5e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCRGGCGCGGTGGCTBACGCCT MEME-9 Description -------------------------------------------------------------------------------- Simplified A ::31::3:11::::1:8:2::: pos.-specific C 9721:8:72123:81417:aa: probability G 1169a:7178179:23127::3 matrix T :2:::2:3117:1273:21::7 bits 2.1 1.9 * ** 1.7 * ** 1.5 * * * ** Relative 1.2 * *** ** *** Entropy 1.0 * **** *** * *** (24.3 bits) 0.8 ** ***** ***** * **** 0.6 *************** ****** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CCGGGCGCGGTGGCTCACGCCT consensus TA AT C TGG G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRGGCGCGGTGGCTBACGCCT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:40403832-40404332 - 48 1.14e-13 CCGCTTTTGG CCGGGCGCGGTGGCTCACGCCT GTAATCCCAG chrX:1799802-1800302 + 73 6.41e-13 GTCATCTTgg ccgggcacggtggctcacgcct gcaatc chr6:44105147-44105647 + 74 4.31e-12 AAAAATGAgg ctaggcgcggtggctcacgcct gtaat chr10:68798461-68798961 + 46 2.43e-10 CAGGAACTAg ccgggcgctgtggtttacgcct gtaatcccag chr19:40624458-40624958 - 17 2.76e-10 AATTCATCAG CCAGGTGTGGTGGCTCACACCT GTAATCCTAG chr14:34539790-34540290 - 17 6.31e-10 ACAAAATTAG CCGGGCGTGGTGGTGTATGCCT GTAATCCCAG chr3:169762960-169763460 + 14 7.06e-10 GGATCTTAGT CCCCgcacggtggctcacgcct gtaatcccag chr10:74032216-74032716 + 2 9.92e-10 g ccaggcacagtggctcatgcct ataatcccag chr12:55829066-55829566 + 34 2.55e-09 cagaaattcg ccaggcgtggtggcgcgcacct gtagtcccag chr6:27602287-27602787 - 24 7.27e-09 GATTGGGGGA CTGGGTGCCGTGGTTTACACCT GTAATCTCAG chr4:4541871-4542371 - 71 3.26e-08 CTCCTCCG CCAGGTGCGCCGGCTGAGGCCG GAACCTTTTT chr6:27213468-27213968 + 5 3.79e-08 ttat ccgagcgtggtggcaggcgcct gtattactag chr5:179623201-179623701 - 64 4.40e-08 TTCGCTGAAT CTCGGCACCGCCGCTGAGGCCT GCAGGCCGCG chr1:11909088-11909588 + 47 1.41e-07 caaaaattag ccgggcaggagggcgcatgcct gtaatcacag chr8:123396237-123396737 - 33 2.16e-07 CGGAGGGATT CTGGGCGCGCGCGCTGCGGCCG CTGGCGCGGA chr1:227734881-227735381 - 66 2.43e-07 CGTCTCGGAG CCGGGCGCCTTCTCCTACGCCG ACTTTGTGCG chr1:212608486-212608986 - 10 2.58e-07 CCCTCAGGCT GGCGGCGCGGTCGTTTACTCCG TGTTGCCAG chr5:177516431-177516931 - 18 1.28e-06 GTCGCAGGGG GCGGGCGTGGCCTCGGCCTCCG TGGGGAGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRGGCGCGGTGGCTBACGCCT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40403832-40404332 1.1e-13 47_[-9]_31 chrX:1799802-1800302 6.4e-13 72_[+9]_6 chr6:44105147-44105647 4.3e-12 73_[+9]_5 chr10:68798461-68798961 2.4e-10 45_[+9]_33 chr19:40624458-40624958 2.8e-10 16_[-9]_62 chr14:34539790-34540290 6.3e-10 16_[-9]_62 chr3:169762960-169763460 7.1e-10 13_[+9]_65 chr10:74032216-74032716 9.9e-10 1_[+9]_77 chr12:55829066-55829566 2.6e-09 33_[+9]_45 chr6:27602287-27602787 7.3e-09 23_[-9]_55 chr4:4541871-4542371 3.3e-08 70_[-9]_8 chr6:27213468-27213968 3.8e-08 4_[+9]_74 chr5:179623201-179623701 4.4e-08 63_[-9]_15 chr1:11909088-11909588 1.4e-07 46_[+9]_32 chr8:123396237-123396737 2.2e-07 32_[-9]_46 chr1:227734881-227735381 2.4e-07 65_[-9]_13 chr1:212608486-212608986 2.6e-07 9_[-9]_69 chr5:177516431-177516931 1.3e-06 17_[-9]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRGGCGCGGTGGCTBACGCCT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCRGGCGCGGTGGCTBACGCCT width=22 seqs=18 chr19:40403832-40404332 ( 48) CCGGGCGCGGTGGCTCACGCCT 1 chrX:1799802-1800302 ( 73) CCGGGCACGGTGGCTCACGCCT 1 chr6:44105147-44105647 ( 74) CTAGGCGCGGTGGCTCACGCCT 1 chr10:68798461-68798961 ( 46) CCGGGCGCTGTGGTTTACGCCT 1 chr19:40624458-40624958 ( 17) CCAGGTGTGGTGGCTCACACCT 1 chr14:34539790-34540290 ( 17) CCGGGCGTGGTGGTGTATGCCT 1 chr3:169762960-169763460 ( 14) CCCCGCACGGTGGCTCACGCCT 1 chr10:74032216-74032716 ( 2) CCAGGCACAGTGGCTCATGCCT 1 chr12:55829066-55829566 ( 34) CCAGGCGTGGTGGCGCGCACCT 1 chr6:27602287-27602787 ( 24) CTGGGTGCCGTGGTTTACACCT 1 chr4:4541871-4542371 ( 71) CCAGGTGCGCCGGCTGAGGCCG 1 chr6:27213468-27213968 ( 5) CCGAGCGTGGTGGCAGGCGCCT 1 chr5:179623201-179623701 ( 64) CTCGGCACCGCCGCTGAGGCCT 1 chr1:11909088-11909588 ( 47) CCGGGCAGGAGGGCGCATGCCT 1 chr8:123396237-123396737 ( 33) CTGGGCGCGCGCGCTGCGGCCG 1 chr1:227734881-227735381 ( 66) CCGGGCGCCTTCTCCTACGCCG 1 chr1:212608486-212608986 ( 10) GGCGGCGCGGTCGTTTACTCCG 1 chr5:177516431-177516931 ( 18) GCGGGCGTGGCCTCGGCCTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRGGCGCGGTGGCTBACGCCT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.2104 E= 1.5e-014 -1081 176 -124 -1081 -1081 146 -224 -9 23 -66 108 -1081 -209 -224 176 -1081 -1081 -1081 193 -1081 -1081 166 -1081 -51 23 -1081 146 -1081 -1081 134 -224 23 -209 -66 146 -209 -209 -124 156 -209 -1081 -66 -124 161 -1081 8 146 -1081 -1081 -1081 176 -109 -1081 156 -1081 -9 -209 -224 -24 149 -1081 76 8 23 171 -124 -124 -1081 -1081 134 -66 -51 -51 -1081 146 -109 -1081 193 -1081 -1081 -1081 193 -1081 -1081 -1081 -1081 8 161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRGGCGCGGTGGCTBACGCCT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 18 E= 1.5e-014 0.000000 0.888889 0.111111 0.000000 0.000000 0.722222 0.055556 0.222222 0.277778 0.166667 0.555556 0.000000 0.055556 0.055556 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.277778 0.000000 0.722222 0.000000 0.000000 0.666667 0.055556 0.277778 0.055556 0.166667 0.722222 0.055556 0.055556 0.111111 0.777778 0.055556 0.000000 0.166667 0.111111 0.722222 0.000000 0.277778 0.722222 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.777778 0.000000 0.222222 0.055556 0.055556 0.222222 0.666667 0.000000 0.444444 0.277778 0.277778 0.777778 0.111111 0.111111 0.000000 0.000000 0.666667 0.166667 0.166667 0.166667 0.000000 0.722222 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.277778 0.722222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRGGCGCGGTGGCTBACGCCT MEME-9 regular expression -------------------------------------------------------------------------------- C[CT][GA]GGC[GA][CT]GGT[GC]G[CT][TG][CGT]ACGCC[TG] -------------------------------------------------------------------------------- Time 5445.93 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTATATAATATATATTTTGDGTACTTTGATATTTTATGTACA MEME-10 width = 43 sites = 4 llr = 203 E-value = 1.2e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTATATAATATATATTTTGDGTACTTTGATATTTTATGTACA MEME-10 Description -------------------------------------------------------------------------------- Simplified A a:3a:8:aa:a:a:8::::33::8:::::8:a::::a:::a:a pos.-specific C :::::::::::3:33:::3::::383::3::::::::::::8: probability G :a:::3:::::::::3:::85a:::::383::::3:::a::3: matrix T ::8:a:a::a:8:8:8aa8:3:a:38a8::a:aa8a:a:a::: bits 2.1 * ** ***** * ** * * **** *** ** * 1.9 ** ** ***** * ** ** * **** ****** * 1.7 ** ** ***** * ** ** * **** ****** * 1.5 ** ** ***** * ** ** * **** ****** * Relative 1.2 ******************** ******* ************ * Entropy 1.0 ******************** ********************** (73.4 bits) 0.8 ******************** ********************** 0.6 ******************** ********************** 0.4 ******************************************* 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel AGTATATAATATATATTTTGGGTACTTTGATATTTTATGTACA consensus A G C CCG CAA CTC GCG G G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTATATAATATATATTTTGDGTACTTTGATATTTTATGTACA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chrUn_KI270466v1:168-668 + 10 5.56e-25 tttatgtac agtatataatatatattttgggtcctttgatattgtatgtaca gtacataata chrUn_KI270467v1:2951-34 + 5 4.61e-24 gtac agtatgtaatatatattttgagtatttggatattttatgtaca gtatataata chrUn_KI270467v1:3150-36 + 57 4.17e-23 ttttatggac agtatataatacacagtttgggtactttggtattttatgtaga g chrUn_KI270467v1:2038-25 + 1 1.24e-22 . agaatataatatatctttcatgtaccttcatattttatgtaca gtatacaata -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTATATAATATATATTTTGDGTACTTTGATATTTTATGTACA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270466v1:168-668 5.6e-25 9_[+10]_48 chrUn_KI270467v1:2951-34 4.6e-24 4_[+10]_53 chrUn_KI270467v1:3150-36 4.2e-23 56_[+10]_1 chrUn_KI270467v1:2038-25 1.2e-22 [+10]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTATATAATATATATTTTGDGTACTTTGATATTTTATGTACA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTATATAATATATATTTTGDGTACTTTGATATTTTATGTACA width=43 seqs=4 chrUn_KI270466v1:168-668 ( 10) AGTATATAATATATATTTTGGGTCCTTTGATATTGTATGTACA 1 chrUn_KI270467v1:2951-34 ( 5) AGTATGTAATATATATTTTGAGTATTTGGATATTTTATGTACA 1 chrUn_KI270467v1:3150-36 ( 57) AGTATATAATACACAGTTTGGGTACTTTGGTATTTTATGTAGA 1 chrUn_KI270467v1:2038-25 ( 1) AGAATATAATATATCTTTCATGTACCTTCATATTTTATGTACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTATATAATATATATTTTGDGTACTTTGATATTTTATGTACA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 13.0866 E= 1.2e-012 207 -865 -865 -865 -865 -865 192 -865 8 -865 -865 166 207 -865 -865 -865 -865 -865 -865 207 166 -865 -7 -865 -865 -865 -865 207 207 -865 -865 -865 207 -865 -865 -865 -865 -865 -865 207 207 -865 -865 -865 -865 -7 -865 166 207 -865 -865 -865 -865 -7 -865 166 166 -7 -865 -865 -865 -865 -7 166 -865 -865 -865 207 -865 -865 -865 207 -865 -7 -865 166 8 -865 151 -865 8 -865 93 8 -865 -865 192 -865 -865 -865 -865 207 166 -7 -865 -865 -865 151 -865 8 -865 -7 -865 166 -865 -865 -865 207 -865 -865 -7 166 -865 -7 151 -865 166 -865 -7 -865 -865 -865 -865 207 207 -865 -865 -865 -865 -865 -865 207 -865 -865 -865 207 -865 -865 -7 166 -865 -865 -865 207 207 -865 -865 -865 -865 -865 -865 207 -865 -865 192 -865 -865 -865 -865 207 207 -865 -865 -865 -865 151 -7 -865 207 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTATATAATATATATTTTGDGTACTTTGATATTTTATGTACA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 4 E= 1.2e-012 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.000000 0.750000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.250000 0.000000 0.750000 0.000000 0.250000 0.000000 0.500000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.250000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTATATAATATATATTTTGDGTACTTTGATATTTTATGTACA MEME-10 regular expression -------------------------------------------------------------------------------- AG[TA]AT[AG]TAATA[TC]A[TC][AC][TG]TT[TC][GA][GAT]GT[AC][CT][TC]T[TG][GC][AG]TATT[TG]TATGTA[CG]A -------------------------------------------------------------------------------- Time 5975.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:36567189-36567689 2.20e-01 17_[-3(3.06e-05)]_64 chr12:27710753-27711253 6.79e-04 77_[-9(1.96e-05)]_1 chr12:12266900-12267400 1.67e-02 100 chr3:169762960-169763460 4.68e-12 13_[+9(7.06e-10)]_[+6(1.94e-15)]_34 chr17:8125536-8126036 2.73e-01 84_[-7(9.78e-05)] chr2:63064157-63064657 2.33e-09 36_[+1(2.81e-10)]_32_[+7(1.18e-05)] chr1:234681925-234682425 8.93e-03 61_[-5(4.42e-06)]_19 chr4:4541871-4542371 6.76e-03 30_[-9(7.04e-06)]_18_[-9(3.26e-08)]_\ 8 chr17:73474220-73474720 2.42e-02 62_[-1(2.18e-07)]_22 chr17:46163585-46164085 1.95e-02 2_[-7(5.75e-07)]_82 chr15:66922740-66923240 1.84e-02 57_[+4(3.55e-05)]_12 chr5:96431781-96432281 4.84e-01 100 chrX:25013838-25014338 1.53e-06 5_[+4(4.21e-09)]_[-7(9.78e-05)]_12_\ [+4(2.36e-08)]_5 chr5:139489128-139489628 7.57e-15 32_[+2(2.73e-11)]_[+8(2.65e-11)]_10 chr12:49060582-49061082 3.83e-02 20_[-6(7.01e-05)]_49 chr16:77896348-77896848 6.40e-04 39_[-1(1.69e-08)]_45 chr12:56158184-56158684 5.04e-03 59_[-4(5.57e-08)]_10 chr6:27602287-27602787 3.13e-03 23_[-9(7.27e-09)]_55 chr1:212608486-212608986 3.70e-04 9_[-9(2.58e-07)]_46_[-1(9.02e-05)]_\ 7 chrX:41334097-41334597 2.31e-01 100 chr14:94048722-94049222 1.42e-03 41_[-1(1.14e-07)]_43 chr7:38964897-38965397 2.09e-05 21_[-7(1.81e-05)]_5_[+3(1.43e-07)]_\ 39 chr6:138109229-138109729 8.52e-01 100 chr1:161530974-161531474 1.59e-02 15_[-7(2.87e-07)]_69 chr6:143264369-143264869 4.75e-03 77_[-1(3.78e-07)]_7 chr1:212035149-212035649 7.02e-01 100 chr21:31559579-31560079 7.14e-01 100 chr2:27663622-27664122 7.05e-02 4_[-4(1.44e-05)]_65 chr1:31704916-31705416 1.73e-02 66_[+7(4.28e-05)]_18 chr2:232473334-232473834 5.25e-02 40_[+1(3.78e-07)]_44 chrX:48573828-48574328 2.33e-02 35_[+7(2.93e-05)]_49 chr5:177516431-177516931 2.38e-02 17_[-9(1.28e-06)]_61 chr14:93859938-93860438 6.33e-02 100 chr14:24140998-24141498 8.11e-01 100 chr12:54033489-54033989 3.06e-01 100 chr18:48902022-48902522 4.47e-01 4_[+9(6.92e-05)]_74 chr17:48619857-48620357 9.25e-03 14_[+4(1.81e-05)]_55 chr5:69521131-69521631 2.92e-02 70_[+2(7.38e-05)]_3 chr6:15956134-15956634 7.93e-05 10_[-4(2.89e-06)]_32_[+7(8.18e-06)]_\ 11 chr19:47132091-47132591 2.37e-07 67_[-6(3.99e-16)]_2 chr1:167926639-167927139 1.06e-04 20_[-3(1.40e-05)]_18_[-2(2.99e-06)]_\ 16 chr21:43868001-43868501 2.90e-01 100 chr1:44730758-44731258 1.32e-01 11_[-2(5.44e-05)]_27_[-7(7.52e-05)]_\ 19 chr12:121888817-12188931 7.81e-01 100 chr6:33433001-33433501 6.97e-02 10_[-4(5.35e-06)]_59 chrX:41084001-41084501 7.10e-01 100 chr7:131327938-131328438 1.46e-01 61_[-4(1.33e-05)]_8 chr12:2696844-2697344 2.74e-01 100 chr21:44939636-44940136 3.46e-02 7_[+3(9.39e-05)]_74 chr12:57782541-57783041 5.11e-01 100 chr2:86808197-86808697 1.89e-01 100 chr4:77075801-77076301 8.93e-01 100 chr21:38986151-38986651 1.57e-03 [+7(2.14e-07)]_84 chr10:75358827-75359327 7.07e-01 100 chr21:32612303-32612803 9.89e-02 100 chr15:72475006-72475506 9.51e-01 100 chr19:33293328-33293828 8.79e-01 100 chr7:105013073-105013573 4.09e-03 40_[+4(8.86e-06)]_29 chr7:100429291-100429791 2.24e-01 100 chr5:54249586-54250086 5.69e-03 65_[-1(2.18e-07)]_19 chr17:29744665-29745165 6.81e-13 [-5(8.85e-13)]_[-5(2.90e-09)]_31_\ [+2(2.44e-05)]_2 chr9:137241129-137241629 1.71e-01 2_[+4(5.83e-06)]_67 chr17:74203515-74204015 8.68e-01 100 chr17:72592352-72592852 8.81e-01 100 chr6:26285138-26285638 8.97e-01 100 chr16:12803402-12803902 5.70e-01 100 chr1:163321494-163321994 3.95e-01 100 chr12:46383591-46384091 9.96e-01 100 chr1:234652623-234653123 1.42e-01 100 chr22:21001773-21002273 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chr1:234373432-234373932 2.29e-01 15_[-4(3.78e-06)]_54 chr6:28597148-28597648 8.89e-01 100 chr6:116100796-116101296 4.49e-01 100 chr1:11909088-11909588 1.27e-13 29_[+7(1.40e-05)]_1_[+9(1.41e-07)]_\ [+6(3.02e-15)]_1 chr11:46346779-46347279 4.75e-01 100 chr1:185316891-185317391 8.74e-06 10_[-4(2.20e-06)]_12_[-6(1.63e-08)]_\ 16 chr1:24970832-24971332 3.67e-07 2_[-5(1.30e-08)]_32_[-5(9.08e-11)]_\ 6_[-5(6.20e-06)] chr1:26500463-26500963 1.35e-01 100 chr1:31937281-31937781 1.40e-04 27_[+5(2.70e-06)]_6_[+4(9.62e-06)]_\ 16 chr6:78867704-78868204 3.88e-03 5_[-2(5.44e-05)]_68 chr12:6613068-6613568 1.14e-01 26_[-4(2.12e-05)]_43 chr2:8682010-8682510 8.24e-01 100 chr1:227734881-227735381 1.34e-03 21_[-4(8.71e-05)]_13_[-9(2.43e-07)]_\ 13 chr17:67993798-67994298 5.75e-04 10_[-4(1.13e-06)]_24_[-4(4.83e-09)]_\ 4 chr17:58630749-58631249 6.74e-04 4_[-2(7.11e-06)]_69 chr5:93581808-93582308 4.80e-09 36_[-7(5.02e-07)]_9_[+4(1.01e-12)]_\ 8 chr1:155127053-155127553 6.19e-02 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chr6:2028582-2029082 7.76e-01 100 chr19:32745569-32746069 5.49e-16 21_[-5(8.85e-13)]_4_[+7(1.55e-06)]_\ 18_[-5(4.13e-08)]_1 chr15:65610888-65611388 5.54e-01 100 chr14:24425684-24426184 1.20e-06 1_[+1(2.81e-10)]_41_[-2(3.30e-06)]_\ 15 chr12:124914429-12491492 5.64e-02 38_[+3(3.18e-05)]_[-9(3.08e-05)]_21 chr9:132102984-132103484 9.24e-10 25_[-3(4.30e-09)]_5_[-2(1.89e-07)]_\ 24 chr21:33324238-33324738 8.29e-01 100 chr9:133030723-133031223 7.97e-01 100 chr17:40219684-40220184 5.72e-01 100 chr7:99375914-99376414 5.89e-11 30_[-1(3.35e-08)]_20_[-8(1.72e-14)]_\ 3 chr17:63600655-63601155 9.41e-01 100 chr5:110054230-110054730 8.99e-04 8_[-1(3.78e-07)]_76 chr9:92325199-92325699 3.40e-02 67_[+4(6.35e-06)]_2 chr4:3736271-3736771 2.14e-04 25_[+3(3.18e-10)]_56 chr15:89893840-89894340 8.09e-01 100 chr6:26158247-26158747 4.06e-01 100 chrX:73944015-73944515 4.92e-01 100 chr20:48806995-48807495 2.54e-05 51_[+3(4.12e-10)]_5_[+5(8.33e-05)]_\ 5 chr5:10288448-10288948 2.17e-03 40_[-1(6.08e-08)]_44 chr6:27147077-27147577 9.33e-01 100 chr13:98050033-98050533 6.75e-04 17_[-1(2.56e-09)]_67 chr11:65498961-65499461 1.42e-01 100 chr17:58658840-58659340 7.07e-04 53_[-2(4.34e-07)]_20 chr17:26619776-26620276 8.00e-02 100 chr1:25247049-25247549 9.56e-01 100 chr19:40920911-40921411 1.76e-01 2_[+10(7.69e-05)]_55 chr1:125179931-125180431 4.12e-02 [+10(6.93e-05)]_12_[+2(9.91e-05)]_\ 18 chr22:42615223-42615723 1.47e-02 8_[+2(5.37e-06)]_13_[-7(2.31e-05)]_\ 36 chr1:182391350-182391850 6.19e-02 21_[-4(1.55e-05)]_48 chr8:38381693-38382193 8.50e-02 100 chr15:72136189-72136689 2.84e-03 26_[+4(8.86e-06)]_27_[-7(4.28e-05)] chr1:144551552-144552052 5.48e-04 12_[+7(3.73e-06)]_72 chr10:75498496-75498996 2.49e-02 52_[+7(1.18e-05)]_32 chr6:26537289-26537789 6.42e-01 100 chr6:44247022-44247522 2.87e-05 24_[+2(1.28e-08)]_49 chr5:134466760-134467260 2.82e-02 15_[+1(3.16e-07)]_69 chr14:49861980-49862480 3.70e-01 100 chr11:62855521-62856021 6.87e-05 73_[-2(3.86e-07)] chr1:80054146-80054646 8.59e-02 48_[+1(1.43e-07)]_36 chr1:155244630-155245130 2.58e-08 9_[-4(5.84e-11)]_60 chr7:102572209-102572709 8.42e-03 36_[+4(2.65e-05)]_33 chr11:34438958-34439458 6.46e-01 100 chr10:88092914-88093414 5.81e-03 55_[-1(8.99e-08)]_29 chr1:223329631-223330131 4.41e-02 17_[-4(1.33e-05)]_52 chr16:57628762-57629262 1.20e-05 2_[-5(4.65e-09)]_6_[-5(1.17e-08)]_\ 26_[-5(4.15e-09)]_6 chr19:37594274-37594774 6.75e-01 100 chr19:18357013-18357513 1.03e-01 100 chr1:203305411-203305911 3.28e-06 51_[-6(3.53e-11)]_18 chr1:27116180-27116680 1.19e-05 6_[-2(4.66e-05)]_16_[-1(3.60e-09)]_\ 35 chr19:48965232-48965732 1.94e-01 41_[+2(7.95e-05)]_32 chr3:136802535-136803035 1.95e-16 63_[-5(3.45e-12)]_[+7(8.47e-07)]_1 chr5:177404063-177404563 1.96e-05 32_[-9(2.71e-05)]_8_[-1(2.56e-09)]_\ 22 chr21:34543874-34544374 2.72e-03 30_[+1(3.93e-08)]_54 chr16:11520982-11521482 1.69e-01 57_[-2(2.06e-05)]_16 chr5:173274726-173275226 7.65e-06 15_[-7(1.53e-05)]_4_[+4(1.41e-07)]_\ 13_[+3(5.65e-05)]_2 chr1:145280997-145281497 8.47e-02 65_[+2(7.38e-05)]_8 chr15:71201505-71202005 5.21e-02 42_[+1(1.01e-07)]_42 chr17:81392983-81393483 1.25e-02 18_[+4(8.46e-07)]_51 chr1:181127021-181127521 7.78e-06 58_[-1(2.81e-10)]_26 chr22:25486943-25487443 1.62e-06 6_[-1(4.54e-09)]_53_[-5(3.59e-06)]_\ 5 chr1:228457517-228458017 6.27e-01 100 chr22:44515724-44516224 2.18e-07 16_[+4(2.72e-07)]_53 chr19:39411872-39412372 2.12e-01 45_[+2(8.56e-05)]_28 chr15:69452795-69453295 4.01e-01 100 chr3:52243319-52243819 5.12e-08 37_[-3(6.39e-08)]_5_[-2(6.11e-07)]_\ 12 chr11:62841260-62841760 1.45e-01 8_[-2(7.38e-05)]_16_[-2(1.03e-05)]_\ 22 chr1:63523024-63523524 1.70e-01 100 chr13:113449100-11344960 4.09e-01 100 chr1:44213161-44213661 8.28e-01 100 chr1:28581483-28581983 2.46e-01 100 chr14:69716067-69716567 1.98e-04 25_[-1(1.43e-07)]_59 chr15:77968455-77968955 3.50e-11 7_[+2(2.06e-05)]_12_[+2(2.64e-08)]_\ 5_[+3(3.56e-11)]_3 chr7:104884054-104884554 3.30e-09 5_[+4(2.75e-10)]_23_[-1(6.08e-08)]_\ 25 chr5:41747188-41747688 2.62e-05 45_[-1(8.45e-10)]_39 chr19:37655843-37656343 1.50e-01 54_[-9(7.28e-06)]_24 chr5:77644668-77645168 1.18e-06 11_[-7(8.97e-06)]_15_[+4(1.09e-08)]_\ 8_[-7(1.55e-06)]_3 chr1:223731385-223731885 5.43e-03 45_[-1(2.85e-08)]_39 chr2:200773039-200773539 2.05e-07 19_[-3(4.77e-09)]_44_[+7(9.58e-07)]_\ 2 chr6:4018190-4018690 6.61e-01 100 chr6:27495588-27496088 9.97e-01 100 chr3:128490253-128490753 3.07e-01 100 chr2:38751006-38751506 6.98e-01 100 chr19:44207424-44207924 2.38e-01 100 chr1:45875938-45876438 4.34e-03 37_[-1(6.14e-09)]_47 chr11:120346978-12034747 1.14e-12 7_[-7(5.58e-10)]_[-7(9.74e-08)]_\ [-7(7.69e-09)]_12_[-7(4.88e-08)]_17 chr1:37989832-37990332 4.24e-01 100 chr17:38881491-38881991 3.41e-07 25_[-1(1.69e-08)]_15_[-5(5.80e-07)]_\ 24 chr1:109484009-109484509 4.69e-02 15_[+4(9.33e-07)]_54 chr1:78620128-78620628 2.29e-06 22_[-7(6.95e-08)]_7_[+7(2.13e-05)]_\ 5_[+1(4.46e-07)]_18 chr12:121404697-12140519 9.39e-06 23_[+1(1.69e-08)]_17_[+5(7.53e-05)]_\ 3_[-7(9.17e-05)]_5 chrX:41333479-41333979 2.15e-08 2_[+7(9.78e-05)]_14_[-2(1.16e-09)]_\ 6_[-4(2.01e-06)]_4 chr2:165825014-165825514 8.30e-06 9_[+2(1.34e-05)]_1_[+1(8.45e-10)]_\ 47 chr21:43771286-43771786 1.63e-01 12_[-8(4.63e-05)]_57 chr17:29293731-29294231 7.69e-02 100 chr17:8186257-8186757 9.01e-01 100 chr19:41310180-41310680 1.35e-01 42_[-8(8.07e-05)]_27 chr10:132905209-13290570 3.92e-11 34_[-7(1.08e-06)]_1_[+2(2.22e-10)]_\ 22 chr6:4692593-4693093 2.37e-04 32_[-3(6.06e-05)]_5_[-2(2.99e-06)]_\ 17 chr19:49848996-49849496 8.53e-02 100 chr17:59776943-59777443 1.69e-03 50_[+2(9.51e-07)]_23 chr1:40257934-40258434 1.03e-02 [-4(3.07e-05)]_69 chr13:112849452-11284995 1.24e-02 56_[-1(1.43e-07)]_28 chr5:81736016-81736516 5.34e-03 21_[-1(9.02e-05)]_7_[-1(3.53e-06)]_\ 40 chr20:46255378-46255878 1.71e-03 61_[+1(1.61e-07)]_23 chr19:30079163-30079663 5.66e-10 32_[+2(6.01e-09)]_5_[+3(2.07e-10)]_\ 17 chr11:2828880-2829380 3.61e-13 27_[-3(2.66e-09)]_18_[-2(2.29e-08)]_\ 9 chr20:57435541-57436041 5.31e-02 45_[-1(1.42e-05)]_39 chr19:36837963-36838463 5.30e-03 2_[+4(8.86e-06)]_67 chrX:53370803-53371303 3.16e-08 [-3(5.47e-08)]_9_[-2(5.14e-09)]_45 chr14:105331573-10533207 6.90e-03 48_[+3(1.01e-08)]_33 chr15:89383541-89384041 8.60e-04 46_[+1(5.29e-08)]_38 chr13:113921716-11392221 1.10e-09 19_[-7(5.75e-07)]_7_[+3(7.03e-11)]_\ 39 chr10:87586165-87586665 1.53e-02 49_[+1(5.63e-07)]_35 chr1:28648549-28649049 1.70e-08 54_[+2(8.10e-11)]_19 chr17:58631367-58631867 3.57e-02 13_[+7(3.98e-05)]_18_[-2(4.66e-05)]_\ 26 chr17:43367557-43368057 6.39e-10 18_[+7(3.73e-06)]_31_[-2(3.26e-10)]_\ 8 chr17:4622337-4622837 2.25e-09 19_[+2(2.64e-08)]_5_[+3(5.06e-08)]_\ 30 chr17:2974278-2974778 2.84e-04 20_[-2(7.64e-07)]_19_[+7(5.05e-06)]_\ 18 chr19:5116254-5116754 3.50e-07 12_[-3(1.40e-09)]_5_[-2(2.71e-06)]_\ 37 chr11:35868455-35868955 4.17e-05 24_[+7(1.95e-06)]_41_[+7(1.08e-05)]_\ 3 chr5:10601222-10601722 2.41e-02 32_[+1(2.63e-07)]_11_[+1(1.85e-05)]_\ 25 chr1:234977849-234978349 6.75e-09 37_[+1(3.60e-09)]_5_[+7(1.08e-05)]_\ 26 chr1:146376839-146377339 5.42e-01 100 chrUn_KI270467v1:3150-36 4.36e-15 14_[+10(8.66e-19)]_10_\ [+2(1.23e-05)]_6 chr6:41449686-41450186 5.80e-04 48_[-1(2.56e-09)]_36 chr17:7484246-7484746 1.59e-06 36_[-7(9.84e-06)]_17_[+4(7.06e-08)] chr19:707751-708251 3.69e-07 1_[+7(8.97e-06)]_34_[+3(2.25e-08)]_\ 30 chr19:45531345-45531845 3.24e-03 6_[+2(1.46e-05)]_67 chr4:5715326-5715826 9.03e-05 55_[+3(3.03e-12)]_26 chr16:965417-965917 2.33e-02 23_[-3(2.44e-05)]_58 chr16:25257951-25258451 5.04e-01 100 chr12:120091304-12009180 3.57e-08 34_[+1(2.56e-09)]_4_[-4(1.96e-07)]_\ 15 chr1:229221425-229221925 5.35e-03 72_[-1(1.58e-06)]_12 chr17:45148366-45148866 5.11e-04 3_[-4(3.74e-07)]_66 chr11:59550360-59550860 2.11e-01 20_[-9(3.83e-05)]_58 chr16:87631023-87631523 9.06e-07 22_[+2(1.46e-05)]_5_[+3(3.61e-10)]_\ 27 chr19:32781232-32781732 7.39e-09 22_[+2(3.03e-08)]_5_[+3(9.20e-09)]_\ 4_[+7(6.12e-05)]_7 chr19:1771079-1771579 8.71e-12 32_[+2(1.47e-07)]_5_[+3(6.40e-12)]_\ 17 chr1:226050082-226050582 1.17e-01 100 chr17:26603654-26604154 2.12e-01 100 chr19:50224943-50225443 1.75e-03 [+4(9.30e-05)]_19_[+10(4.12e-05)]_7 chrUn_KI270466v1:168-668 1.62e-17 9_[+10(5.56e-25)]_10_[+2(1.18e-06)]_\ 11 chrUn_KI270467v1:2038-25 3.08e-15 [+10(1.24e-22)]_10_[+2(1.46e-05)]_\ 20 chr6:157649772-157650272 1.30e-02 34_[-1(3.93e-08)]_24_[-1(3.93e-08)]_\ 10 chrUn_KI270467v1:2951-34 7.06e-18 4_[+10(4.61e-24)]_10_[+2(4.87e-07)]_\ 16 chr1:53137709-53138209 3.69e-08 23_[+2(1.30e-07)]_5_[+3(1.07e-07)]_\ 26 chr17:7750228-7750728 6.14e-09 13_[+2(6.84e-10)]_5_[+3(5.68e-07)]_\ 36 chr16:1271755-1272255 2.71e-02 14_[+1(1.14e-07)]_22_[+1(1.14e-07)]_\ 32 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: wotan ********************************************************************************