# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:03:40 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF624.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:03:40 PDT 2018)
#        host: wotan
#        when: Thu May 10 19:43:53 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.235 C 0.264 G 0.262 T 0.239


MOTIF CTTGGCWC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTGGCWC   GWGCCAAG         37          0   4.1e-012   1.3e-007
#         CTTGGCAC   GTGCCAAG         23          0   9.6e-008   3.1e-003
#         CTTGGCTC   GAGCCAAG         14          0   5.7e-005   1.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 1.3e-007
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.631579 0.000000 0.000000 0.368421
0.000000 1.000000 0.000000 0.000000


MOTIF CYTGGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CYTGGCA    TGCCARG         68         20   4.9e-008   1.6e-003
#          CCTGGCA    TGCCAGG         46         11   9.8e-007   3.2e-002
#          CTTGGCA    TGCCAAG         23          9   9.2e-003   3.0e+002

letter-probability matrix: alength= 4 w= 7 nsites= 78 E= 1.6e-003
0.000000 1.000000 0.000000 0.000000
0.000000 0.679487 0.000000 0.320513
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 41.84 seconds