# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF623.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF623.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF623.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF623.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:03:40 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF623.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:03:40 PDT 2018) # host: wotan # when: Thu May 10 19:15:27 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.217 C 0.280 G 0.287 T 0.217 MOTIF CAAAGGYC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CAAAGGYC GRCCTTTG 525 7 2.3e-244 5.7e-240 # CAAAGGCC GGCCTTTG 436 4 1.9e-180 4.7e-176 # CAAAGGTC GACCTTTG 90 3 4.6e-025 1.2e-020 letter-probability matrix: alength= 4 w= 8 nsites= 533 E= 5.7e-240 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.829268 0.000000 0.170732 0.000000 1.000000 0.000000 0.000000 MOTIF CTGDGGY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CTGDGGY RCCHCAG 532 126 1.5e-134 3.8e-130 # CTGAGGC GCCTCAG 179 27 4.8e-034 1.2e-029 # CTGGGGC GCCCCAG 138 39 1.5e-016 3.8e-012 # CTGAGGT ACCTCAG 89 13 1.6e-016 4.0e-012 # CTGTGGC GCCACAG 74 15 1.6e-011 4.1e-007 # CTGGGGT ACCCCAG 77 22 3.2e-009 7.9e-005 # CTGTGGT ACCACAG 39 14 3.1e-004 7.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 622 E= 3.8e-130 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.445338 0.000000 0.361736 0.192926 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.655949 0.000000 0.344051 MOTIF CACDKGC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CACDKGC GCMHGTG 352 90 5.5e-058 1.3e-053 # CACATGC GCATGTG 96 13 1.8e-018 4.4e-014 # CACGTGC GCACGTG 45 3 3.1e-011 7.6e-007 # CACTGGC GCCAGTG 91 25 3.6e-011 8.8e-007 # CACGGGC GCCCGTG 29 0 1.3e-009 3.2e-005 # CACTTGC GCAAGTG 84 28 1.3e-008 3.2e-004 # CACAGGC GCCTGTG 51 26 2.2e-003 5.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 405 E= 1.3e-053 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.370370 0.000000 0.182716 0.446914 0.000000 0.000000 0.432099 0.567901 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGAAYR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GGAAYR YRTTCC 333 76 3.7e-058 8.8e-054 # GGAACA TGTTCC 222 39 2.5e-040 5.9e-036 # GGAATG CATTCC 109 28 4.0e-014 9.6e-010 # GGAATA TATTCC 40 7 3.4e-007 8.0e-003 # GGAACG CGTTCC 21 7 5.8e-003 1.4e+002 letter-probability matrix: alength= 4 w= 6 nsites= 446 E= 8.8e-054 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.647982 0.000000 0.352018 0.692825 0.000000 0.307175 0.000000 MOTIF TCCAGSCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TCCAGSCA TGSCTGGA 80 8 2.3e-017 5.3e-013 # TCCAGGCA TGCCTGGA 46 3 1.6e-011 3.7e-007 # TCCAGCCA TGGCTGGA 36 5 2.6e-007 6.0e-003 letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 5.3e-013 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.439024 0.560976 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAYRC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ACAYRC GYRTGT 138 48 2.5e-013 5.8e-009 # ACATAC GTATGT 17 1 6.5e-005 1.5e+000 # ACACAC GTGTGT 60 26 9.4e-005 2.2e+000 # ACACGC GCGTGT 25 5 1.4e-004 3.2e+000 # ACATGC GCATGT 42 17 5.9e-004 1.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 144 E= 5.8e-009 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.583333 0.000000 0.416667 0.534722 0.000000 0.465278 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCTYTTCC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GCTYTTCC GGAARAGC 45 3 3.1e-011 7.0e-007 # GCTCTTCC GGAAGAGC 33 3 7.8e-008 1.8e-003 # GCTTTTCC GGAAAAGC 12 0 2.3e-004 5.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 7.0e-007 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.744681 0.000000 0.255319 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAAAYA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GAAAYA TRTTTC 71 23 1.3e-007 2.9e-003 # GAAACA TGTTTC 54 20 2.9e-005 6.4e-001 # GAAATA TATTTC 20 3 2.2e-004 4.9e+000 letter-probability matrix: alength= 4 w= 6 nsites= 77 E= 2.9e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.740260 0.000000 0.259740 1.000000 0.000000 0.000000 0.000000 MOTIF AGGAGGCC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AGGAGGCC GGCCTCCT 34 4 2.1e-007 4.6e-003 # AGGAGGCC GGCCTCCT 34 4 2.1e-007 4.6e-003 letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 4.6e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGGCAGAG DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AGGCAGAG CTCTGCCT 57 16 3.6e-007 8.0e-003 # AGGCAGAG CTCTGCCT 57 16 3.6e-007 8.0e-003 letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 8.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGRAC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST AGRAC GTYCT 231 154 1.2e-006 2.7e-002 # AGAAC GTTCT 117 75 6.0e-004 1.3e+001 # AGGAC GTCCT 134 93 1.6e-003 3.4e+001 letter-probability matrix: alength= 4 w= 5 nsites= 268 E= 2.7e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.462687 0.000000 0.537313 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 141.67 seconds