# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF610.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF610.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF610.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF610.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:35:29 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF610.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:35:30 PST 2017) # host: wotan # when: Mon Dec 18 17:00:57 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.215 C 0.283 G 0.285 T 0.217 MOTIF GAGYGGC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GAGYGGC GCCRCTC 369 43 4.1e-096 1.1e-091 # GAGCGGC GCCGCTC 239 23 1.3e-057 3.4e-053 # GAGTGGC GCCACTC 138 20 4.5e-026 1.2e-021 letter-probability matrix: alength= 4 w= 7 nsites= 405 E= 1.1e-091 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.634568 0.000000 0.365432 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GHGGTAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GHGGTAA TTACCDC 249 6 1.4e-079 3.8e-075 # GTGGTAA TTACCAC 169 1 1.3e-055 3.5e-051 # GCGGTAA TTACCGC 54 2 6.9e-015 1.9e-010 # GAGGTAA TTACCTC 27 3 3.3e-006 9.0e-002 letter-probability matrix: alength= 4 w= 7 nsites= 251 E= 3.8e-075 0.000000 0.000000 1.000000 0.000000 0.107570 0.215139 0.000000 0.677291 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAYACA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAAYACA TGTRTTT 214 3 1.1e-069 3.0e-065 # AAATACA TGTATTT 193 1 8.5e-065 2.3e-060 # AAACACA TGTGTTT 21 2 2.9e-005 7.6e-001 letter-probability matrix: alength= 4 w= 7 nsites= 214 E= 3.0e-065 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.098131 0.000000 0.901869 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AARCTTCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AARCTTCA TGAAGYTT 195 4 9.7e-061 2.6e-056 # AAGCTTCA TGAAGCTT 178 3 9.8e-056 2.6e-051 # AAACTTCA TGAAGTTT 17 1 6.5e-005 1.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 195 E= 2.6e-056 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.087179 0.000000 0.912821 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAGBAGG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ACAGBAGG CCTVCTGT 201 7 4.3e-059 1.1e-054 # ACAGGAGG CCTCCTGT 161 3 1.9e-049 5.0e-045 # ACAGCAGG CCTGCTGT 44 4 3.8e-010 1.0e-005 # ACAGTAGG CCTACTGT 7 0 7.7e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 212 E= 1.1e-054 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.207547 0.759434 0.033019 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CKGAGCTC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CKGAGCTC GAGCTCMG 192 6 6.3e-057 1.7e-052 # CTGAGCTC GAGCTCAG 182 5 1.8e-054 4.8e-050 # CGGAGCTC GAGCTCCG 61 1 2.9e-018 7.6e-014 letter-probability matrix: alength= 4 w= 8 nsites= 193 E= 1.7e-052 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.186528 0.813472 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCCATYGC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCCATYGC GCRATGGG 117 0 1.1e-038 3.0e-034 # CCCATTGC GCAATGGG 89 0 4.7e-029 1.2e-024 # CCCATCGC GCGATGGG 28 0 2.7e-009 7.1e-005 letter-probability matrix: alength= 4 w= 8 nsites= 117 E= 3.0e-034 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.239316 0.000000 0.760684 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGATCA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CAGATCA TGATCTG 143 13 1.2e-032 3.1e-028 # CAGATCA TGATCTG 143 13 1.2e-032 3.1e-028 letter-probability matrix: alength= 4 w= 7 nsites= 143 E= 3.1e-028 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCATTAS DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GCATTAS STAATGC 96 9 2.7e-021 6.9e-017 # GCATTAG CTAATGC 77 4 6.9e-020 1.8e-015 # GCATTAC GTAATGC 21 5 1.1e-003 2.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 100 E= 6.9e-017 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.210000 0.790000 0.000000 MOTIF GKGAGCA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST GKGAGCA TGCTCMC 132 35 1.0e-016 2.6e-012 # GTGAGCA TGCTCAC 93 21 2.5e-013 6.4e-009 # GGGAGCA TGCTCCC 48 14 5.3e-006 1.4e-001 letter-probability matrix: alength= 4 w= 7 nsites= 153 E= 2.6e-012 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.326797 0.673203 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATTCTCA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ATTCTCA TGAGAAT 49 4 1.5e-011 3.8e-007 # ATTCTCA TGAGAAT 49 4 1.5e-011 3.8e-007 letter-probability matrix: alength= 4 w= 7 nsites= 49 E= 3.8e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTGAGTGR DREME-12 # Word RC Word Pos Neg P-value E-value # BEST GTGAGTGR YCACTCAC 49 5 8.5e-011 2.2e-006 # GTGAGTGA TCACTCAC 36 4 6.0e-008 1.5e-003 # GTGAGTGG CCACTCAC 13 1 8.7e-004 2.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 2.2e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 MOTIF TATTKACA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST TATTKACA TGTMAATA 27 1 8.2e-008 2.1e-003 # TATTTACA TGTAAATA 18 1 3.4e-005 8.7e-001 # TATTGACA TGTCAATA 9 0 1.9e-003 4.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.1e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AACCRCTC DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AACCRCTC GAGYGGTT 20 0 8.1e-007 2.1e-002 # AACCGCTC GAGCGGTT 12 0 2.3e-004 5.9e+000 # AACCACTC GAGTGGTT 8 0 3.8e-003 9.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.1e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCAAGCRA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST GCAAGCRA TYGCTTGC 34 5 8.5e-007 2.2e-002 # GCAAGCAA TTGCTTGC 26 5 8.0e-005 2.0e+000 # GCAAGCGA TCGCTTGC 9 0 1.9e-003 4.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 2.2e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.742857 0.000000 0.257143 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 184.45 seconds