# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF600.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF600.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF600.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF600.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:35:19 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF600.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:35:19 PST 2017)
#        host: wotan
#        when: Mon Dec 18 17:01:22 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.214 C 0.283 G 0.288 T 0.214


MOTIF GTTMTGS DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GTTMTGS    SCAKAAC        146         33   3.6e-021   1.2e-016
#          GTTCTGG    CCAGAAC         58          9   1.2e-010   3.9e-006
#          GTTCTGC    GCAGAAC         54         17   3.4e-006   1.1e-001
#          GTTATGG    CCATAAC         27          5   4.6e-005   1.5e+000
#          GTTATGC    GCATAAC         15          3   3.6e-003   1.1e+002

letter-probability matrix: alength= 4 w= 7 nsites= 165 E= 1.2e-016
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.290909 0.709091 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.436364 0.563636 0.000000


MOTIF BGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       BGGAA      TTCCV        375        257   5.8e-012   1.8e-007
#            GGGAA      TTCCC        206        122   3.4e-008   1.1e-003
#            TGGAA      TTCCA        168        112   8.4e-005   2.7e+000
#            CGGAA      TTCCG        104         66   1.1e-003   3.4e+001

letter-probability matrix: alength= 4 w= 5 nsites= 566 E= 1.8e-007
0.000000 0.199647 0.452297 0.348057
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF KCCTCCY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     KCCTCCY    RGGAGGM        128         62   1.1e-007   3.3e-003
#          TCCTCCT    AGGAGGA         34         11   3.3e-004   9.9e+000
#          TCCTCCC    GGGAGGA         47         20   4.7e-004   1.4e+001
#          GCCTCCC    GGGAGGC         39         19   5.0e-003   1.5e+002
#          GCCTCCT    AGGAGGC         35         17   7.6e-003   2.3e+002

letter-probability matrix: alength= 4 w= 7 nsites= 152 E= 3.3e-003
0.000000 0.000000 0.480263 0.519737
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.578947 0.000000 0.421053


# Stopping reason: E-value threshold exceeded
#    Running time: 49.63 seconds