# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:35:03 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:35:04 PST 2017) # host: indra # when: Mon Dec 18 16:48:09 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.345 C 0.158 G 0.165 T 0.331 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 376 79 4.8e-074 1.1e-069 # TAAATAAA TTTATTTA 376 79 4.8e-074 1.1e-069 letter-probability matrix: alength= 4 w= 8 nsites= 1904 E= 1.1e-069 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RTCTCAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RTCTCAA TTGAGAY 217 12 1.5e-059 3.4e-055 # GTCTCAA TTGAGAC 148 5 3.5e-042 8.0e-038 # ATCTCAA TTGAGAT 70 7 3.1e-015 7.0e-011 letter-probability matrix: alength= 4 w= 7 nsites= 219 E= 3.4e-055 0.319635 0.000000 0.680365 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGTCTY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GAGTCTY RAGACTC 130 3 2.0e-038 4.4e-034 # GAGTCTC GAGACTC 82 2 1.1e-023 2.4e-019 # GAGTCTT AAGACTC 48 1 3.5e-014 7.8e-010 letter-probability matrix: alength= 4 w= 7 nsites= 131 E= 4.4e-034 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.633588 0.000000 0.366412 MOTIF GGYRACA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GGYRACA TGTYRCC 103 6 4.6e-026 1.0e-021 # GGCAACA TGTTGCC 38 3 3.1e-009 6.9e-005 # GGTGACA TGTCACC 37 3 6.0e-009 1.3e-004 # GGCGACA TGTCGCC 22 0 2.0e-007 4.3e-003 # GGTAACA TGTTACC 7 0 7.7e-003 1.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 105 E= 1.0e-021 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.580952 0.000000 0.419048 0.438095 0.000000 0.561905 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF DCTC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST DCTC GAGH 530 382 2.2e-024 4.9e-020 # GCTC GAGC 260 167 1.3e-008 2.9e-004 # ACTC GAGT 266 188 2.2e-006 4.8e-002 # TCTC GAGA 352 287 1.1e-004 2.3e+000 letter-probability matrix: alength= 4 w= 4 nsites= 2806 E= 4.9e-020 0.130078 0.000000 0.135780 0.734141 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CWGSC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CWGSC GSCWG 154 79 2.7e-008 4.7e-004 # CAGCC GGCTG 61 25 3.6e-005 6.4e-001 # CAGGC GCCTG 60 29 4.3e-004 7.5e+000 # CTGCC GGCAG 50 22 4.6e-004 8.0e+000 # CTGGC GCCAG 46 25 6.9e-003 1.2e+002 letter-probability matrix: alength= 4 w= 5 nsites= 186 E= 4.7e-004 0.000000 1.000000 0.000000 0.000000 0.575269 0.000000 0.000000 0.424731 0.000000 0.000000 1.000000 0.000000 0.000000 0.548387 0.451613 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCCRCC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCCRCC GGYGGG 29 3 9.7e-007 1.6e-002 # CCCACC GGTGGG 23 3 3.7e-005 6.1e-001 # CCCGCC GGCGGG 8 0 3.8e-003 6.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 30 E= 1.6e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.733333 0.000000 0.266667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACAYACAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST ACAYACAC GTGTRTGT 38 7 1.0e-006 1.7e-002 # ACACACAC GTGTGTGT 36 7 3.1e-006 5.1e-002 # ACATACAC GTGTATGT 10 0 9.4e-004 1.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 1.7e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.894118 0.000000 0.105882 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 28.83 seconds