Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
TAAATAAA | 8 | TAAATAAA |
RTCTCAA | 7 | GTCTCAA |
GAGTCTY | 7 | GAGTCTC |
GGYRACA | 7 | GGCGACA |
DCTC | 4 | TCTC |
CWGSC | 5 | CAGCC |
CCCRCC | 6 | CCCACC |
ACAYACAC | 8 | ACACACAC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.280 C 0.220 G 0.220 T 0.280
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
RTCTCAA | DREME-2 | chr22_KI270733v1_random | - | 136582 | 136588 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | + | 1939347 | 1939353 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | - | 2484509 | 2484515 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr19 | - | 5689661 | 5689667 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | + | 6404702 | 6404708 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | - | 7449838 | 7449844 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | + | 7450032 | 7450038 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | + | 8093858 | 8093864 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | - | 9255322 | 9255328 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | - | 10798845 | 10798851 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | - | 12062174 | 12062180 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | + | 12062371 | 12062377 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 12113884 | 12113890 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | + | 13673167 | 13673173 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 14997255 | 14997261 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr10 | - | 15018544 | 15018550 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 15575772 | 15575778 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | + | 16493244 | 16493250 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | + | 16493444 | 16493450 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr22 | + | 18020908 | 18020914 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | + | 19188013 | 19188019 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | + | 19255516 | 19255522 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | - | 19255637 | 19255643 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | - | 19760181 | 19760187 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | - | 21572711 | 21572717 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | - | 21821025 | 21821031 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | - | 22295531 | 22295537 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr8 | - | 22450851 | 22450857 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | + | 23771947 | 23771953 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chrX | + | 23880693 | 23880699 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chrX | - | 24144215 | 24144221 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 24593909 | 24593915 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | + | 24594106 | 24594112 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr6 | - | 25947460 | 25947466 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | + | 25947660 | 25947666 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr10 | - | 27970759 | 27970765 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr8 | + | 28291544 | 28291550 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr6 | - | 28894788 | 28894794 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | + | 28894997 | 28895003 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr19 | + | 29505920 | 29505926 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr16 | + | 30052691 | 30052697 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr7 | - | 30295157 | 30295163 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | - | 30570768 | 30570774 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | + | 30642382 | 30642388 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr16 | - | 30642521 | 30642527 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | + | 30642708 | 30642714 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr6 | + | 31105862 | 31105868 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | + | 31361330 | 31361336 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr6 | - | 31755167 | 31755173 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | - | 31755377 | 31755383 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr20 | - | 32118651 | 32118657 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr20 | + | 32118843 | 32118849 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 32157972 | 32157978 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 32158085 | 32158091 | 6.55e-05 | 0.14 | GTCTCAa |
RTCTCAA | DREME-2 | chr17 | - | 32176588 | 32176594 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | + | 32326142 | 32326148 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | - | 32367229 | 32367235 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr19 | + | 32398575 | 32398581 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr21 | - | 32493815 | 32493821 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 32609117 | 32609123 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr21 | - | 32695862 | 32695868 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | + | 32699903 | 32699909 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr19 | + | 33123066 | 33123072 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr19 | - | 33159251 | 33159257 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | + | 33378134 | 33378140 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr9 | + | 33474670 | 33474676 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 35380343 | 35380349 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr19 | - | 35386173 | 35386179 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr10 | - | 35406405 | 35406411 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | + | 35421203 | 35421209 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr19 | - | 35461887 | 35461893 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr19 | - | 35461901 | 35461907 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | + | 35860386 | 35860392 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | + | 35860705 | 35860711 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr22 | - | 36088736 | 36088742 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr21 | - | 36123009 | 36123015 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr21 | + | 36123182 | 36123188 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 36159072 | 36159078 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | + | 36644006 | 36644012 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr20 | - | 37059968 | 37059974 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr20 | + | 37060167 | 37060173 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr19 | + | 37160336 | 37160342 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr21 | - | 37275043 | 37275049 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr8 | - | 37892469 | 37892475 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr8 | + | 37892652 | 37892658 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr19 | + | 37918865 | 37918871 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr6 | + | 38045303 | 38045309 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | - | 38318842 | 38318848 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | + | 38667233 | 38667239 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr19 | + | 40103771 | 40103777 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr19 | - | 40301356 | 40301362 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr19 | + | 40301556 | 40301562 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | - | 40325046 | 40325052 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr19 | + | 40346437 | 40346443 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr19 | + | 40567291 | 40567297 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr22 | - | 40625573 | 40625579 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | - | 41191798 | 41191804 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr8 | - | 41847980 | 41847986 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr22 | - | 42473887 | 42473893 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr22 | - | 42474094 | 42474100 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr22 | + | 43019236 | 43019242 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr22 | + | 43019411 | 43019417 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | - | 43576320 | 43576326 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr19 | - | 43709422 | 43709428 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr19 | + | 43709683 | 43709689 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr21 | - | 43905207 | 43905213 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | - | 45011801 | 45011807 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | + | 45011865 | 45011871 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 45093859 | 45093865 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 45094072 | 45094078 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr11 | - | 45672818 | 45672824 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr11 | + | 45673025 | 45673031 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | - | 46380633 | 46380639 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | - | 46830128 | 46830134 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | - | 47544729 | 47544735 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr18 | - | 48873780 | 48873786 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr18 | + | 48873980 | 48873986 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr18 | - | 49515228 | 49515234 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 50718035 | 50718041 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | + | 50795368 | 50795374 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 51873526 | 51873532 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr20 | + | 52000684 | 52000690 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | + | 52848085 | 52848091 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | + | 52879980 | 52879986 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | + | 53550318 | 53550324 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | + | 53779845 | 53779851 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | - | 54312896 | 54312902 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | + | 54313110 | 54313116 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 55463630 | 55463636 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | - | 56219810 | 56219816 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | + | 56220011 | 56220017 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr3 | + | 56995687 | 56995693 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr3 | - | 56995695 | 56995701 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | + | 59442781 | 59442787 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 59594535 | 59594541 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr3 | + | 61732703 | 61732709 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | - | 62218011 | 62218017 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr17 | - | 63255120 | 63255126 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr15 | - | 64346472 | 64346478 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | - | 66760127 | 66760133 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr11 | - | 67122691 | 67122697 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 67536898 | 67536904 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 67537279 | 67537285 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr16 | + | 67555247 | 67555253 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr16 | - | 67555484 | 67555490 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 67698977 | 67698983 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | + | 67699178 | 67699184 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chrX | + | 68078978 | 68078984 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 68235395 | 68235401 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr7 | - | 69413121 | 69413127 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | + | 69982966 | 69982972 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chrX | + | 71116778 | 71116784 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr10 | - | 72580492 | 72580498 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | - | 72720026 | 72720032 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | + | 72720225 | 72720231 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr13 | - | 73934991 | 73934997 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr10 | + | 74485456 | 74485462 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | + | 75888150 | 75888156 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr17 | + | 75888347 | 75888353 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | - | 76779271 | 76779277 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | - | 78028038 | 78028044 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | - | 78028203 | 78028209 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | + | 78081845 | 78081851 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr15 | + | 78404983 | 78404989 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr13 | - | 80358341 | 80358347 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr15 | + | 80382906 | 80382912 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr6 | + | 82260194 | 82260200 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chrX | - | 83164028 | 83164034 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | + | 83164227 | 83164233 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | + | 84620428 | 84620434 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | + | 84892207 | 84892213 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr2 | - | 85238835 | 85238841 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr10 | - | 86796592 | 86796598 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | + | 87555093 | 87555099 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr10 | - | 88419800 | 88419806 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | + | 89778880 | 89778886 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr15 | - | 90182641 | 90182647 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | - | 95944374 | 95944380 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | - | 95944417 | 95944423 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | + | 96428773 | 96428779 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 96818752 | 96818758 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | - | 96818941 | 96818947 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | + | 96819140 | 96819146 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr2 | - | 96889474 | 96889480 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr2 | + | 96889672 | 96889678 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | + | 100011934 | 100011940 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr10 | + | 101751966 | 101751972 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr10 | - | 101752213 | 101752219 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr14 | - | 102639280 | 102639286 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr10 | + | 103000231 | 103000237 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr10 | - | 103000469 | 103000475 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr10 | + | 103359647 | 103359653 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr6 | - | 105985060 | 105985066 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | + | 107810214 | 107810220 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | + | 110265613 | 110265619 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | - | 110265797 | 110265803 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | + | 110387440 | 110387446 | 6.55e-05 | 0.14 | GTCTCaa |
RTCTCAA | DREME-2 | chr12 | - | 112328154 | 112328160 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 113113578 | 113113584 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr7 | + | 115740196 | 115740202 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | + | 115971933 | 115971939 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | - | 116124258 | 116124264 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | - | 117200315 | 117200321 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | + | 117203962 | 117203968 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | - | 120664763 | 120664769 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | + | 121177933 | 121177939 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr12 | - | 121912059 | 121912065 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr12 | + | 122513189 | 122513195 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 122696844 | 122696850 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | - | 125579999 | 125580005 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | - | 126819505 | 126819511 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | + | 126819702 | 126819708 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 127023725 | 127023731 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr2 | + | 128228019 | 128228025 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 128430844 | 128430850 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr9 | - | 128838978 | 128838984 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | - | 129554747 | 129554753 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | - | 130362153 | 130362159 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr9 | + | 130700233 | 130700239 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr9 | - | 130700374 | 130700380 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr9 | - | 130827690 | 130827696 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr9 | + | 130827888 | 130827894 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chrX | - | 133750869 | 133750875 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | + | 133751067 | 133751073 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr9 | + | 135985307 | 135985313 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chrX | - | 136122293 | 136122299 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | - | 136777020 | 136777026 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr9 | + | 137038601 | 137038607 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chrX | - | 137246794 | 137246800 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chrX | + | 137246993 | 137246999 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr6 | - | 138177105 | 138177111 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | + | 138525522 | 138525528 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr4 | - | 139240599 | 139240605 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr8 | + | 140473012 | 140473018 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 147541401 | 147541407 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 148280180 | 148280186 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr7 | + | 149108086 | 149108092 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr7 | - | 150367072 | 150367078 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr6 | + | 152421920 | 152421926 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chrX | + | 153937190 | 153937196 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 155225048 | 155225054 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 155225327 | 155225333 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | + | 155225527 | 155225533 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr7 | - | 155519315 | 155519321 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr7 | + | 155519515 | 155519521 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | + | 155575658 | 155575664 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 155575839 | 155575845 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | + | 155576036 | 155576042 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | + | 160008844 | 160008850 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | - | 160243037 | 160243043 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | - | 168286833 | 168286839 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | + | 168287033 | 168287039 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr3 | - | 172143704 | 172143710 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr3 | + | 172143737 | 172143743 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr3 | - | 172144006 | 172144012 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr5 | + | 175559109 | 175559115 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr5 | - | 177345785 | 177345791 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr4 | + | 190112100 | 190112106 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr2 | + | 190365820 | 190365826 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 196145372 | 196145378 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | + | 196145570 | 196145576 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 199999848 | 199999854 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr2 | + | 216518696 | 216518702 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr2 | - | 216518920 | 216518926 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 226221759 | 226221765 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 226252100 | 226252106 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | + | 226748003 | 226748009 | 6.55e-05 | 0.14 | gtctcaa |
RTCTCAA | DREME-2 | chr1 | - | 227253391 | 227253397 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 229919724 | 229919730 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | + | 233783355 | 233783361 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 240620910 | 240620916 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 245044516 | 245044522 | 6.55e-05 | 0.14 | GTCTCAA |
RTCTCAA | DREME-2 | chr1 | - | 245044593 | 245044599 | 6.55e-05 | 0.14 | GTCTCAA |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_12 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif RTCTCAA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_12 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF596.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.