Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
AGGCCYRG 8 AGGCCTAG
AAACCAYT 8 AAACCATT
GAGGRAA 7 GAGGAAA
CYATCAC 7 CCATCAC
CTGCAYA 7 CTGCACA
AGGGRCT 7 AGGGGCT
CVTGGGCC 8 CCTGGGCC
CAGCANGG 8 CAGCAGGG
GCCCACR 7 GCCCACA
ACCAWGTC 8 ACCAAGTC
CTTGGGAC 8 CTTGGGAC
CCCTGTGY 8 CCCTGTGC
CTCARGAC 8 CTCAGGAC
AGGTCYAG 8 AGGTCCAG
AAATGDTT 8 AAATGATT
TACAYA 6 TACACA
GAGGACAR 8 GAGGACAG
AGCCCATG 8 AGCCCATG
CMCTGCTC 8 CCCTGCTC
GCCATGAA 8 GCCATGAA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.257 C 0.243 G 0.243 T 0.257


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CCCTGTGY DREME-12 chr12 + 12648285 12648292 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr18 - 22688067 22688074 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr19 - 28815413 28815420 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr5 + 32684486 32684493 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr5 + 34765874 34765881 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr19 - 39095980 39095987 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr12 + 39878955 39878962 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr19 - 43330213 43330220 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr17 + 49260917 49260924 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr13 + 52016509 52016516 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chrX + 53725095 53725102 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr5 - 59408179 59408186 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr13 + 60408990 60408997 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr3 - 66422070 66422077 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr11 - 68304173 68304180 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr12 + 72071180 72071187 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr2 + 72386526 72386533 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr14 - 74702471 74702478 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr1 + 74756862 74756869 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr15 + 75742530 75742537 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr9 + 82346248 82346255 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr5 - 86768963 86768970 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr14 + 90938786 90938793 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr11 - 91783333 91783340 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr14 - 96011288 96011295 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr13 - 99509635 99509642 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr3 - 99805325 99805332 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr7 - 105712174 105712181 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr13 + 106322845 106322852 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr6 - 108008497 108008504 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr6 + 109831573 109831580 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chrX - 114932701 114932708 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr10 + 117303680 117303687 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr10 + 124419293 124419300 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr12 - 131744041 131744048 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr11 + 134081409 134081416 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr9 - 137401748 137401755 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr4 + 152587338 152587345 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chrX + 153358135 153358142 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr3 - 155052618 155052625 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr7 - 158984173 158984180 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr3 + 160940474 160940481 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr6 - 165236524 165236531 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr6 - 170001978 170001985 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr1 - 193433140 193433147 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr3 - 193714743 193714750 1.36e-05 0.093 CCCTGTGC
CCCTGTGY DREME-12 chr1 + 199533598 199533605 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr2 + 212106777 212106784 1.36e-05 0.093 ccctgtgc
CCCTGTGY DREME-12 chr17 - 2623019 2623026 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr12 - 4879634 4879641 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr11 - 9189060 9189067 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr12 + 10646808 10646815 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr1 - 12222828 12222835 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr5 - 14566580 14566587 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr9 - 15492897 15492904 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr11 - 19612164 19612171 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr9 - 20276889 20276896 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr9 - 20540601 20540608 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr20 + 20829937 20829944 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr2 - 20928770 20928777 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr7 + 23795223 23795230 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr6 + 24731705 24731712 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr10 - 24765134 24765141 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr1 - 27680578 27680585 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr14 - 30834529 30834536 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr6 + 32453434 32453441 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr3 + 32965804 32965811 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr12 + 33017283 33017290 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr22 + 33789174 33789181 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr5 + 34765906 34765913 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr14 - 35034629 35034636 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr14 + 37206234 37206241 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr5 - 37283377 37283384 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr3 - 37568264 37568271 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr15 - 40014539 40014546 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr21 + 41995824 41995831 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr7 + 43716846 43716853 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr21 + 44791418 44791425 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr6 - 44972838 44972845 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr22 - 45463828 45463835 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr22 - 46265717 46265724 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr17 + 49260838 49260845 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr19 + 49288471 49288478 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr17 - 50225846 50225853 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr13 + 50233791 50233798 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr13 + 52016541 52016548 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr1 + 53205736 53205743 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr6 + 54797171 54797178 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr5 + 56242534 56242541 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr13 + 60409022 60409029 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr17 + 60492043 60492050 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr15 - 65137225 65137232 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr1 + 65744976 65744983 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr12 - 67673649 67673656 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr14 - 68102106 68102113 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chrX + 68798642 68798649 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr16 - 69636704 69636711 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr2 - 73530913 73530920 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr14 - 73607382 73607389 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr1 + 74756894 74756901 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr5 + 75161756 75161763 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr1 - 75484926 75484933 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr13 + 76068101 76068108 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr14 + 77947587 77947594 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr11 + 78272879 78272886 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr12 + 79838601 79838608 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr18 + 80001109 80001116 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chrX + 81294354 81294361 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr17 - 81858566 81858573 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr9 + 82346280 82346287 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr6 - 82376758 82376765 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr6 - 84489740 84489747 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr2 + 85882019 85882026 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr10 + 87611584 87611591 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr12 + 88018222 88018229 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr12 - 88031307 88031314 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr4 - 88120299 88120306 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr5 + 88856630 88856637 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr12 + 89786417 89786424 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr11 - 91783301 91783308 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr5 + 92012072 92012079 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr14 - 92245194 92245201 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr12 - 93754208 93754215 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr14 - 95584354 95584361 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr10 - 95874922 95874929 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr13 - 96198191 96198198 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr9 - 97779820 97779827 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr15 + 99192421 99192428 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr6 - 99637770 99637777 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr6 + 99722300 99722307 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr10 + 101327710 101327717 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chrX - 102818411 102818418 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr14 + 103984414 103984421 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr14 - 104066876 104066883 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr12 - 105535194 105535201 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr12 + 107096743 107096750 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr1 + 107510601 107510608 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr1 - 108132522 108132529 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr8 - 108359013 108359020 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr1 - 109434522 109434529 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr6 + 109831605 109831612 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr2 + 110155088 110155095 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr13 - 110782321 110782328 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr12 + 114600826 114600833 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chrX - 115204192 115204199 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr6 - 117971784 117971791 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr7 - 121285220 121285227 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr6 + 125465554 125465561 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr7 - 127546479 127546486 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr11 - 129795223 129795230 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr7 + 130861064 130861071 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr12 - 131744009 131744016 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr6 + 135478880 135478887 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr9 + 137702996 137703003 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr7 - 138512651 138512658 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr5 + 139720212 139720219 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr5 - 145993671 145993678 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chrX - 154914190 154914197 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr6 - 156614142 156614149 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr7 - 156698656 156698663 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr3 + 156879751 156879758 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr7 - 158984141 158984148 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr5 - 172032020 172032027 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr1 + 173470870 173470877 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr2 - 174364766 174364773 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr5 + 179400258 179400265 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr1 - 180959736 180959743 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr2 - 190140620 190140627 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr2 - 199917165 199917172 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr2 + 212170652 212170659 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr1 + 218507592 218507599 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr2 + 224736423 224736430 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr1 - 231686515 231686522 2.8e-05 0.093 CCCTGTGT
CCCTGTGY DREME-12 chr1 + 233891398 233891405 2.8e-05 0.093 ccctgtgt
CCCTGTGY DREME-12 chr12 + 16021032 16021039 5.6e-05 0.16 ccctgtgg
CCCTGTGY DREME-12 chr3 + 16081610 16081617 5.6e-05 0.16 ccctgtgg
CCCTGTGY DREME-12 chr14 + 29839788 29839795 5.6e-05 0.16 ccctgtga
CCCTGTGY DREME-12 chr18 + 32897194 32897201 5.6e-05 0.16 ccctgtgg
CCCTGTGY DREME-12 chr5 - 43815798 43815805 5.6e-05 0.16 CCCTGTGA
CCCTGTGY DREME-12 chr21 + 45964637 45964644 5.6e-05 0.16 ccctgtgg
CCCTGTGY DREME-12 chr5 + 50945120 50945127 5.6e-05 0.16 ccctgtga
CCCTGTGY DREME-12 chr5 - 50945401 50945408 5.6e-05 0.16 CCCTGTGA
CCCTGTGY DREME-12 chr2 + 53709327 53709334 5.6e-05 0.16 ccctgtgg
CCCTGTGY DREME-12 chr12 - 54628624 54628631 5.6e-05 0.16 CCCTGTGA
CCCTGTGY DREME-12 chr15 + 55257293 55257300 5.6e-05 0.16 CCCTGTGG
CCCTGTGY DREME-12 chrX - 74090118 74090125 5.6e-05 0.16 CCCTGTGG
CCCTGTGY DREME-12 chrX + 78301006 78301013 5.6e-05 0.16 ccctgtga
CCCTGTGY DREME-12 chr17 - 81012813 81012820 5.6e-05 0.16 CCCTGTGA
CCCTGTGY DREME-12 chr9 + 82916330 82916337 5.6e-05 0.16 ccctgtga
CCCTGTGY DREME-12 chr6 + 82942680 82942687 5.6e-05 0.16 ccctgtga
CCCTGTGY DREME-12 chr14 - 102111376 102111383 5.6e-05 0.16 CCCTGTGA
CCCTGTGY DREME-12 chr6 - 105410053 105410060 5.6e-05 0.16 CCCTGTGG
CCCTGTGY DREME-12 chr13 - 110782568 110782575 5.6e-05 0.16 CCCTGTGG
CCCTGTGY DREME-12 chr2 + 119421517 119421524 5.6e-05 0.16 ccctgtga
CCCTGTGY DREME-12 chr6 - 124301058 124301065 5.6e-05 0.16 CCCTGTGA
CCCTGTGY DREME-12 chr5 + 125253895 125253902 5.6e-05 0.16 ccctgtga
CCCTGTGY DREME-12 chr7 + 138512582 138512589 5.6e-05 0.16 ccctgtga
CCCTGTGY DREME-12 chr4 - 141051076 141051083 5.6e-05 0.16 CCCTGTGG
CCCTGTGY DREME-12 chr6 + 144059498 144059505 5.6e-05 0.16 CCCTGTGA
CCCTGTGY DREME-12 chr2 - 144254056 144254063 5.6e-05 0.16 CCCTGTGA
CCCTGTGY DREME-12 chr5 + 175650011 175650018 5.6e-05 0.16 ccctgtgg
CCCTGTGY DREME-12 chr5 - 181174208 181174215 5.6e-05 0.16 CCCTGTGG

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_54 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif CCCTGTGY /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_54 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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