# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:31:34 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:31:35 PST 2017) # host: kadru # when: Mon Dec 18 16:50:41 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.207 C 0.293 G 0.296 T 0.204 MOTIF AGGCCYRG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGGCCYRG CYRGGCCT 537 50 2.0e-200 3.5e-196 # AGGCCTAG CTAGGCCT 345 5 1.0e-125 1.8e-121 # AGGCCCAG CTGGGCCT 323 21 1.6e-094 2.8e-090 # AGGCCTGG CCAGGCCT 209 26 1.5e-044 2.7e-040 # AGGCCCGG CCGGGCCT 17 0 6.8e-006 1.2e-001 letter-probability matrix: alength= 4 w= 8 nsites= 993 E= 3.5e-196 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.426989 0.000000 0.573011 0.767372 0.000000 0.232628 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAACCAYT DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AAACCAYT ARTGGTTT 456 4 4.1e-194 7.1e-190 # AAACCATT AATGGTTT 399 3 3.5e-159 6.0e-155 # AAACCACT AGTGGTTT 57 1 5.3e-017 9.1e-013 letter-probability matrix: alength= 4 w= 8 nsites= 456 E= 7.1e-190 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 MOTIF GAGGRAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GAGGRAA TTYCCTC 410 26 5.4e-134 9.1e-130 # GAGGAAA TTTCCTC 314 4 6.6e-112 1.1e-107 # GAGGGAA TTCCCTC 96 22 1.3e-013 2.2e-009 letter-probability matrix: alength= 4 w= 7 nsites= 410 E= 9.1e-130 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.765854 0.000000 0.234146 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CYATCAC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CYATCAC GTGATRG 369 10 8.9e-131 1.5e-126 # CCATCAC GTGATGG 341 5 1.2e-123 1.9e-119 # CTATCAC GTGATAG 28 5 2.7e-005 4.5e-001 letter-probability matrix: alength= 4 w= 7 nsites= 370 E= 1.5e-126 0.000000 1.000000 0.000000 0.000000 0.000000 0.924324 0.000000 0.075676 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGCAYA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTGCAYA TRTGCAG 328 17 3.5e-101 5.8e-097 # CTGCACA TGTGCAG 291 11 3.2e-091 5.3e-087 # CTGCATA TATGCAG 38 6 3.1e-007 5.1e-003 letter-probability matrix: alength= 4 w= 7 nsites= 329 E= 5.8e-097 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.884498 0.000000 0.115502 1.000000 0.000000 0.000000 0.000000 MOTIF AGGGRCT DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGGGRCT AGYCCCT 297 61 3.5e-053 5.7e-049 # AGGGGCT AGCCCCT 214 52 6.3e-031 1.0e-026 # AGGGACT AGTCCCT 119 10 1.6e-027 2.6e-023 letter-probability matrix: alength= 4 w= 7 nsites= 338 E= 5.7e-049 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363905 0.000000 0.636095 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CVTGGGCC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CVTGGGCC GGCCCABG 221 31 4.1e-045 6.5e-041 # CCTGGGCC GGCCCAGG 144 22 1.4e-026 2.2e-022 # CATGGGCC GGCCCATG 71 8 8.4e-015 1.3e-010 # CGTGGGCC GGCCCACG 18 1 3.4e-005 5.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 231 E= 6.5e-041 0.000000 1.000000 0.000000 0.000000 0.307359 0.614719 0.077922 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGCANGG DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CAGCANGG CCNTGCTG 187 37 1.3e-030 2.0e-026 # CAGCAGGG CCCTGCTG 93 21 2.5e-013 3.9e-009 # CAGCATGG CCATGCTG 42 7 1.1e-007 1.7e-003 # CAGCAAGG CCTTGCTG 43 10 1.7e-006 2.7e-002 # CAGCACGG CCGTGCTG 9 0 1.9e-003 3.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 187 E= 2.0e-026 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.229947 0.048128 0.497326 0.224599 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCCCACR DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GCCCACR YGTGGGC 140 30 4.9e-021 7.6e-017 # GCCCACA TGTGGGC 123 30 1.2e-016 1.8e-012 # GCCCACG CGTGGGC 17 0 6.8e-006 1.1e-001 letter-probability matrix: alength= 4 w= 7 nsites= 140 E= 7.6e-017 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.878571 0.000000 0.121429 0.000000 MOTIF ACCAWGTC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACCAWGTC GACWTGGT 71 3 4.7e-019 7.2e-015 # ACCAAGTC GACTTGGT 49 1 1.7e-014 2.6e-010 # ACCATGTC GACATGGT 22 2 1.5e-005 2.3e-001 letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 7.2e-015 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.690141 0.000000 0.000000 0.309859 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTTGGGAC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CTTGGGAC GTCCCAAG 50 4 7.7e-012 1.2e-007 # CTTGGGAC GTCCCAAG 50 4 7.7e-012 1.2e-007 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.2e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCCTGTGY DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CCCTGTGY RCACAGGG 47 3 8.1e-012 1.2e-007 # CCCTGTGC GCACAGGG 29 1 2.1e-008 3.2e-004 # CCCTGTGT ACACAGGG 18 2 1.8e-004 2.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.2e-007 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.617021 0.000000 0.382979 MOTIF CTCARGAC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CTCARGAC GTCYTGAG 40 1 1.0e-011 1.5e-007 # CTCAGGAC GTCCTGAG 33 1 1.3e-009 2.0e-005 # CTCAAGAC GTCTTGAG 7 0 7.7e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.5e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.175000 0.000000 0.825000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGGTCYAG DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AGGTCYAG CTRGACCT 63 10 2.3e-011 3.4e-007 # AGGTCTAG CTAGACCT 26 1 1.6e-007 2.4e-003 # AGGTCCAG CTGGACCT 39 9 5.2e-006 7.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 3.4e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAATGDTT DREME-15 # Word RC Word Pos Neg P-value E-value # BEST AAATGDTT AAHCATTT 38 2 4.3e-010 6.5e-006 # AAATGATT AATCATTT 13 0 1.1e-004 1.7e+000 # AAATGGTT AACCATTT 13 0 1.1e-004 1.7e+000 # AAATGTTT AAACATTT 12 2 6.2e-003 9.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 6.5e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.342105 0.000000 0.342105 0.315789 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF TACAYA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST TACAYA TRTGTA 42 4 1.4e-009 2.0e-005 # TACACA TGTGTA 30 3 5.2e-007 7.7e-003 # TACATA TATGTA 12 1 1.6e-003 2.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 42 E= 2.0e-005 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.285714 1.000000 0.000000 0.000000 0.000000 MOTIF GAGGACAR DREME-17 # Word RC Word Pos Neg P-value E-value # BEST GAGGACAR YTGTCCTC 36 2 1.7e-009 2.4e-005 # GAGGACAG CTGTCCTC 24 1 6.2e-007 9.1e-003 # GAGGACAA TTGTCCTC 12 1 1.6e-003 2.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.4e-005 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 MOTIF AGCCCATG DREME-18 # Word RC Word Pos Neg P-value E-value # BEST AGCCCATG CATGGGCT 50 8 3.7e-009 5.3e-005 # AGCCCATG CATGGGCT 50 8 3.7e-009 5.3e-005 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 5.3e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CMCTGCTC DREME-19 # Word RC Word Pos Neg P-value E-value # BEST CMCTGCTC GAGCAGKG 53 11 2.3e-008 3.4e-004 # CACTGCTC GAGCAGTG 25 3 1.1e-005 1.6e-001 # CCCTGCTC GAGCAGGG 28 8 5.0e-004 7.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 3.4e-004 0.000000 1.000000 0.000000 0.000000 0.471698 0.528302 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCCATGAA DREME-20 # Word RC Word Pos Neg P-value E-value # BEST GCCATGAA TTCATGGC 28 3 1.8e-006 2.6e-002 # GCCATGAA TTCATGGC 28 3 1.8e-006 2.6e-002 letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 2.6e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 91.11 seconds