Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CYRGGCCTGTGATGGGAGGGGC | 22 | CTGGGCCTGTGATGGGAGGGGC |
CCTCCTAGGCCT | 12 | CCTCCTAGGCCT |
AAAAAATGGTTT | 12 | AAAAAATGGTTT |
CTSTGTGCAGCCTHG | 15 | CTGTGTGCAGCCTAG |
GGRCCCTGGGCCY | 13 | GGGCCCTGGGCCT |
CYRGGCCTGTGATGGG | 16 | CTGGGCCTGTGATGGG |
GGCACCAAGTCC | 12 | GGCACCAAGTCC |
RTGGGCY | 7 | GTGGGCC |
CTGCTBTGTGCAGYCT | 16 | CTGCTTTGTGCAGTCT |
RCTGCCCTGCACMRCCTCAGGA | 22 | ACTGCCCTGCACAACCTCAGGA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.257 C 0.243 G 0.243 T 0.257
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
RTGGGCY | MEME-8 | chr10 | - | 96700 | 96706 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr4 | + | 203020 | 203026 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr10 | - | 7692557 | 7692563 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr19 | + | 7757730 | 7757736 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr11 | + | 9189051 | 9189057 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr1 | - | 12222878 | 12222884 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr1 | + | 12563314 | 12563320 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr1 | + | 15306556 | 15306562 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr20 | - | 19064993 | 19064999 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr2 | - | 20021593 | 20021599 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr9 | + | 20276790 | 20276796 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chrX | + | 20542311 | 20542317 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr8 | + | 22391517 | 22391523 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr7 | - | 23795181 | 23795187 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr10 | - | 24765185 | 24765191 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr12 | + | 25707249 | 25707255 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr18 | - | 32897363 | 32897369 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr12 | + | 33017233 | 33017239 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr15 | - | 35487605 | 35487611 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr18 | + | 36038415 | 36038421 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chrX | + | 39303009 | 39303015 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr2 | - | 39359880 | 39359886 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr2 | + | 40021201 | 40021207 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr5 | + | 40882482 | 40882488 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr21 | + | 41995774 | 41995780 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr21 | + | 44791367 | 44791373 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr1 | + | 45258239 | 45258245 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr22 | - | 45463879 | 45463885 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr19 | + | 49288421 | 49288427 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr13 | + | 50233741 | 50233747 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr12 | + | 50833974 | 50833980 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr13 | + | 52016491 | 52016497 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr15 | - | 55257299 | 55257305 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr14 | + | 55312796 | 55312802 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr12 | - | 55570231 | 55570237 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr15 | - | 56014876 | 56014882 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr5 | + | 56628842 | 56628848 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr19 | - | 57374395 | 57374401 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr5 | - | 58467420 | 58467426 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr17 | - | 69698544 | 69698550 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr13 | + | 72693085 | 72693091 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr2 | - | 73530964 | 73530970 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr2 | - | 73638603 | 73638609 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr2 | - | 73698271 | 73698277 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr17 | - | 74488927 | 74488933 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr1 | - | 75484977 | 75484983 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr15 | + | 75742512 | 75742518 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chrX | + | 76643793 | 76643799 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr14 | + | 77947539 | 77947545 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr11 | + | 78272829 | 78272835 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr6 | - | 78387050 | 78387056 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr15 | - | 78524439 | 78524445 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr5 | - | 80463464 | 80463470 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr17 | + | 81012723 | 81012729 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chrX | + | 82782184 | 82782190 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr6 | + | 82931000 | 82931006 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr6 | + | 82942543 | 82942549 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr5 | - | 83348574 | 83348580 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr6 | - | 84489791 | 84489797 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr5 | - | 86768989 | 86768995 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr1 | - | 86924756 | 86924762 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr10 | + | 87887795 | 87887801 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr5 | + | 88856580 | 88856586 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr12 | + | 89786367 | 89786373 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr11 | - | 91783352 | 91783358 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr11 | + | 91783384 | 91783390 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr12 | + | 94017429 | 94017435 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr9 | + | 94128790 | 94128796 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr13 | - | 96198242 | 96198248 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr3 | - | 99805351 | 99805357 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr1 | - | 101040825 | 101040831 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr5 | - | 103721403 | 103721409 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr14 | + | 103984364 | 103984370 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr14 | - | 104066927 | 104066933 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr7 | + | 104198853 | 104198859 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr6 | - | 105409922 | 105409928 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr6 | + | 105409954 | 105409960 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr7 | - | 105712200 | 105712206 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr12 | + | 107096693 | 107096699 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr1 | - | 108132573 | 108132579 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr5 | + | 109551446 | 109551452 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr1 | - | 113718812 | 113718818 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr10 | + | 115105596 | 115105602 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr5 | + | 115167082 | 115167088 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr5 | - | 115167197 | 115167203 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr8 | + | 116721137 | 116721143 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chrX | + | 116975712 | 116975718 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr11 | - | 117398798 | 117398804 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr5 | - | 118657791 | 118657797 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr11 | + | 120618606 | 120618612 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr11 | + | 120618710 | 120618716 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr7 | - | 121285270 | 121285276 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr7 | + | 124958151 | 124958157 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr4 | + | 125423317 | 125423323 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chrX | + | 125883371 | 125883377 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr6 | - | 128768388 | 128768394 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr3 | - | 129697424 | 129697430 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr2 | - | 135453236 | 135453242 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr6 | - | 136832357 | 136832363 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr5 | - | 137381727 | 137381733 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr9 | - | 137703175 | 137703181 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr6 | + | 139234403 | 139234409 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr8 | + | 140398921 | 140398927 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr5 | - | 143385213 | 143385219 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr7 | + | 144427725 | 144427731 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr6 | + | 146965318 | 146965324 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr6 | - | 146965410 | 146965416 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr1 | + | 151362544 | 151362550 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr5 | + | 151417924 | 151417930 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr4 | + | 151946990 | 151946996 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chrX | + | 153049296 | 153049302 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chrX | + | 153358085 | 153358091 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr6 | + | 159848742 | 159848748 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr5 | - | 172032070 | 172032076 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr3 | - | 172242654 | 172242660 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr5 | + | 174498802 | 174498808 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr1 | - | 180959787 | 180959793 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr3 | + | 181510707 | 181510713 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr4 | + | 186191153 | 186191159 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr2 | + | 197573755 | 197573761 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr2 | + | 204412982 | 204412988 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr1 | + | 220249705 | 220249711 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr2 | - | 220926458 | 220926464 | 5.29e-05 | 0.246 | GTGGGCC |
RTGGGCY | MEME-8 | chr1 | + | 225177561 | 225177567 | 5.29e-05 | 0.246 | gtgggcc |
RTGGGCY | MEME-8 | chr1 | - | 231686563 | 231686569 | 5.29e-05 | 0.246 | GTGGGCC |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_8 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif RTGGGCY /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_8 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF585B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.