# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:31:01 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:31:03 PST 2017) # host: wotan # when: Mon Dec 18 17:00:22 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.234 C 0.267 G 0.270 T 0.230 MOTIF ACCGGAW DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ACCGGAW WTCCGGT 129 8 1.6e-032 5.5e-028 # ACCGGAA TTCCGGT 119 8 2.8e-029 9.6e-025 # ACCGGAT ATCCGGT 14 0 5.7e-005 1.9e+000 letter-probability matrix: alength= 4 w= 7 nsites= 153 E= 5.5e-028 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.901961 0.000000 0.000000 0.098039 MOTIF CGGWAGY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CGGWAGY RCTWCCG 106 16 2.2e-019 7.3e-015 # CGGAAGT ACTTCCG 56 9 3.9e-010 1.3e-005 # CGGAAGC GCTTCCG 36 5 2.6e-007 8.8e-003 # CGGTAGC GCTACCG 15 2 1.1e-003 3.7e+001 # CGGTAGT ACTACCG 9 0 1.9e-003 6.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 122 E= 7.3e-015 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.803279 0.000000 0.000000 0.196721 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.426230 0.000000 0.573770 MOTIF DCCTACC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST DCCTACC GGTAGGH 56 11 4.4e-009 1.5e-004 # GCCTACC GGTAGGC 21 3 1.2e-004 4.0e+000 # TCCTACC GGTAGGA 16 2 6.1e-004 2.0e+001 # ACCTACC GGTAGGT 20 6 4.3e-003 1.4e+002 letter-probability matrix: alength= 4 w= 7 nsites= 64 E= 1.5e-004 0.390625 0.000000 0.359375 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAYTACA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GAYTACA TGTARTC 39 6 1.7e-007 5.7e-003 # GATTACA TGTAATC 21 3 1.2e-004 4.0e+000 # GACTACA TGTAGTC 18 3 6.8e-004 2.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 40 E= 5.7e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.475000 0.000000 0.525000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCTGAGSC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GCTGAGSC GSCTCAGC 22 0 2.0e-007 6.5e-003 # GCTGAGGC GCCTCAGC 15 0 2.8e-005 9.2e-001 # GCTGAGCC GGCTCAGC 7 0 7.7e-003 2.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 6.5e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.318182 0.681818 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATGRCG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ATGRCG CGYCAT 53 14 4.6e-007 1.5e-002 # ATGGCG CGCCAT 32 9 1.7e-004 5.7e+000 # ATGACG CGTCAT 22 5 6.7e-004 2.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 54 E= 1.5e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.407407 0.000000 0.592593 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TACWAAAA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST TACWAAAA TTTTWGTA 26 2 1.2e-006 3.9e-002 # TACAAAAA TTTTTGTA 18 1 3.4e-005 1.1e+000 # TACTAAAA TTTTAGTA 15 1 2.4e-004 7.9e+000 letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 3.9e-002 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.558824 0.000000 0.000000 0.441176 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 103.97 seconds