Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
GGAWTAC | 7 | GGAATAC |
GCTGHATA | 8 | GCTGCATA |
CTTTTTYA | 8 | CTTTTTTA |
ARGGACAT | 8 | AAGGACAT |
CTTHATCC | 8 | CTTCATCC |
GAACTCM | 7 | GAACTCA |
ATGGTGWA | 8 | ATGGTGTA |
GGYACATA | 8 | GGCACATA |
GARACCA | 7 | GAAACCA |
AGTAGAGA | 8 | AGTAGAGA |
AAAATGT | 7 | AAAATGT |
GGAGGCY | 7 | GGAGGCT |
AAAAKACA | 8 | AAAATACA |
AAATTAGC | 8 | AAATTAGC |
GCCTGRCC | 8 | GCCTGGCC |
GGMWGGA | 7 | GGATGGA |
AGCAAACT | 8 | AGCAAACT |
AAAAGRA | 7 | AAAAGGA |
SAGAATGA | 8 | GAGAATGA |
GAYCTCA | 7 | GACCTCA |
CRCGCC | 6 | CACGCC |
AGTCTATC | 8 | AGTCTATC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.278 C 0.222 G 0.222 T 0.278
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
AGCAAACT | DREME-17 | chr18 | - | 759981 | 759988 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr12 | + | 1317286 | 1317293 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr17 | + | 1565352 | 1565359 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr12 | - | 1733880 | 1733887 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr17 | + | 2653152 | 2653159 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | + | 3613834 | 3613841 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr4 | + | 4257947 | 4257954 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | + | 7031214 | 7031221 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr10 | - | 8179885 | 8179892 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr17 | - | 8682710 | 8682717 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | + | 14837995 | 14838002 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr10 | + | 15583245 | 15583252 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | - | 15699464 | 15699471 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | - | 16628738 | 16628745 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | - | 17039318 | 17039325 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | - | 17307592 | 17307599 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | - | 17357625 | 17357632 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | - | 17376014 | 17376021 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr11 | - | 17425957 | 17425964 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr8 | + | 17604467 | 17604474 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chrX | + | 19512050 | 19512057 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | - | 20617689 | 20617696 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | - | 20721233 | 20721240 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr14 | - | 22615909 | 22615916 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr18 | + | 22622081 | 22622088 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr3 | + | 24413897 | 24413904 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr3 | + | 24421080 | 24421087 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr22 | - | 25572129 | 25572136 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr7 | + | 25894163 | 25894170 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr12 | - | 26057399 | 26057406 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | + | 27633229 | 27633236 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr8 | + | 27813200 | 27813207 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr22 | + | 28463644 | 28463651 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | + | 28757449 | 28757456 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr10 | + | 29614543 | 29614550 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr19 | - | 29915993 | 29916000 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr19 | - | 30346617 | 30346624 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr19 | - | 30346771 | 30346778 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr19 | - | 30398661 | 30398668 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr8 | + | 30920684 | 30920691 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr8 | - | 31054993 | 31055000 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr19 | + | 33313039 | 33313046 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | - | 34329921 | 34329928 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr14 | + | 34460826 | 34460833 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr18 | - | 34534764 | 34534771 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | + | 34884296 | 34884303 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr17 | + | 35703561 | 35703568 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr19 | - | 37076645 | 37076652 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr4 | - | 37923226 | 37923233 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | + | 37973963 | 37973970 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr5 | + | 38516939 | 38516946 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr17 | - | 39346962 | 39346969 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr19 | + | 40091969 | 40091976 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr19 | - | 40547301 | 40547308 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | + | 43883322 | 43883329 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr19 | - | 44220052 | 44220059 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | - | 44658768 | 44658775 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr18 | + | 44801013 | 44801020 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr17 | - | 46839798 | 46839805 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | + | 47089728 | 47089735 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | + | 47275386 | 47275393 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | - | 47691474 | 47691481 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr19 | - | 49945971 | 49945978 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | + | 50419911 | 50419918 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr10 | + | 50569030 | 50569037 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr12 | + | 54639367 | 54639374 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr5 | - | 55991011 | 55991018 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | - | 56562860 | 56562867 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr14 | + | 57258429 | 57258436 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr17 | + | 58678557 | 58678564 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr3 | - | 61711043 | 61711050 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr10 | - | 61977130 | 61977137 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr18 | - | 63190974 | 63190981 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr18 | + | 63201709 | 63201716 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr16 | - | 66567428 | 66567435 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | - | 67559171 | 67559178 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | + | 67837462 | 67837469 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr17 | + | 68758094 | 68758101 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr15 | - | 69146845 | 69146852 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | - | 69521208 | 69521215 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr15 | + | 71004778 | 71004785 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | - | 72978949 | 72978956 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | - | 78021248 | 78021255 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | - | 79361212 | 79361219 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | - | 81714179 | 81714186 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr15 | + | 82534745 | 82534752 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | + | 87709300 | 87709307 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr10 | + | 88663400 | 88663407 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr16 | + | 89246565 | 89246572 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr7 | + | 95009033 | 95009040 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr11 | - | 95136878 | 95136885 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr7 | + | 96662401 | 96662408 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | + | 100224360 | 100224367 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr12 | - | 101560093 | 101560100 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr10 | - | 102724124 | 102724131 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr7 | + | 105303196 | 105303203 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | - | 109461227 | 109461234 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | - | 111062817 | 111062824 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | - | 113078007 | 113078014 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr5 | - | 113521035 | 113521042 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr10 | - | 114720145 | 114720152 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | + | 115521970 | 115521977 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | - | 116685559 | 116685566 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr7 | - | 117414755 | 117414762 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr10 | - | 119239790 | 119239797 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr2 | + | 120235399 | 120235406 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr7 | - | 121005201 | 121005208 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr7 | - | 121290078 | 121290085 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr2 | + | 121640102 | 121640109 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr10 | + | 126172989 | 126172996 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | + | 133936587 | 133936594 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr7 | + | 140529675 | 140529682 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | + | 143448133 | 143448140 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr5 | - | 143983119 | 143983126 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr3 | - | 156914435 | 156914442 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | + | 162018013 | 162018020 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | - | 162082213 | 162082220 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr6 | + | 165593181 | 165593188 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr6 | - | 167829880 | 167829887 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr3 | + | 169544752 | 169544759 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr4 | + | 169931010 | 169931017 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | - | 180006879 | 180006886 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | + | 183066687 | 183066694 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | + | 203314661 | 203314668 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr2 | + | 203536807 | 203536814 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | + | 205281309 | 205281316 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | - | 214609813 | 214609820 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | + | 221591499 | 221591506 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | - | 224005083 | 224005090 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | + | 226432196 | 226432203 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | + | 228662563 | 228662570 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | - | 231645784 | 231645791 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | - | 231729113 | 231729120 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | + | 232156300 | 232156307 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | + | 233345464 | 233345471 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | + | 236078337 | 236078344 | 1.81e-05 | 0.0777 | agcaaact |
AGCAAACT | DREME-17 | chr1 | - | 240275361 | 240275368 | 1.81e-05 | 0.0777 | AGCAAACT |
AGCAAACT | DREME-17 | chr1 | - | 241425252 | 241425259 | 1.81e-05 | 0.0777 | AGCAAACT |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_23 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif AGCAAACT /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_23 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.