Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GGAWTAC 7 GGAATAC
GCTGHATA 8 GCTGCATA
CTTTTTYA 8 CTTTTTTA
ARGGACAT 8 AAGGACAT
CTTHATCC 8 CTTCATCC
GAACTCM 7 GAACTCA
ATGGTGWA 8 ATGGTGTA
GGYACATA 8 GGCACATA
GARACCA 7 GAAACCA
AGTAGAGA 8 AGTAGAGA
AAAATGT 7 AAAATGT
GGAGGCY 7 GGAGGCT
AAAAKACA 8 AAAATACA
AAATTAGC 8 AAATTAGC
GCCTGRCC 8 GCCTGGCC
GGMWGGA 7 GGATGGA
AGCAAACT 8 AGCAAACT
AAAAGRA 7 AAAAGGA
SAGAATGA 8 GAGAATGA
GAYCTCA 7 GACCTCA
CRCGCC 6 CACGCC
AGTCTATC 8 AGTCTATC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.278 C 0.222 G 0.222 T 0.278


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
AGCAAACT DREME-17 chr18 - 759981 759988 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr12 + 1317286 1317293 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr17 + 1565352 1565359 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr12 - 1733880 1733887 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr17 + 2653152 2653159 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 + 3613834 3613841 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr4 + 4257947 4257954 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 + 7031214 7031221 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr10 - 8179885 8179892 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr17 - 8682710 8682717 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 + 14837995 14838002 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr10 + 15583245 15583252 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 - 15699464 15699471 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 - 16628738 16628745 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 - 17039318 17039325 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 - 17307592 17307599 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 - 17357625 17357632 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 - 17376014 17376021 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr11 - 17425957 17425964 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr8 + 17604467 17604474 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chrX + 19512050 19512057 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 - 20617689 20617696 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 - 20721233 20721240 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr14 - 22615909 22615916 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr18 + 22622081 22622088 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr3 + 24413897 24413904 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr3 + 24421080 24421087 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr22 - 25572129 25572136 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr7 + 25894163 25894170 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr12 - 26057399 26057406 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 + 27633229 27633236 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr8 + 27813200 27813207 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr22 + 28463644 28463651 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 + 28757449 28757456 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr10 + 29614543 29614550 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr19 - 29915993 29916000 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr19 - 30346617 30346624 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr19 - 30346771 30346778 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr19 - 30398661 30398668 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr8 + 30920684 30920691 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr8 - 31054993 31055000 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr19 + 33313039 33313046 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 - 34329921 34329928 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr14 + 34460826 34460833 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr18 - 34534764 34534771 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 + 34884296 34884303 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr17 + 35703561 35703568 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr19 - 37076645 37076652 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr4 - 37923226 37923233 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 + 37973963 37973970 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr5 + 38516939 38516946 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr17 - 39346962 39346969 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr19 + 40091969 40091976 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr19 - 40547301 40547308 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 + 43883322 43883329 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr19 - 44220052 44220059 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 - 44658768 44658775 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr18 + 44801013 44801020 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr17 - 46839798 46839805 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 + 47089728 47089735 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 + 47275386 47275393 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 - 47691474 47691481 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr19 - 49945971 49945978 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 + 50419911 50419918 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr10 + 50569030 50569037 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr12 + 54639367 54639374 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr5 - 55991011 55991018 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 - 56562860 56562867 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr14 + 57258429 57258436 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr17 + 58678557 58678564 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr3 - 61711043 61711050 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr10 - 61977130 61977137 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr18 - 63190974 63190981 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr18 + 63201709 63201716 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr16 - 66567428 66567435 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 - 67559171 67559178 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 + 67837462 67837469 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr17 + 68758094 68758101 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr15 - 69146845 69146852 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 - 69521208 69521215 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr15 + 71004778 71004785 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 - 72978949 72978956 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 - 78021248 78021255 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 - 79361212 79361219 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 - 81714179 81714186 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr15 + 82534745 82534752 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 + 87709300 87709307 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr10 + 88663400 88663407 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr16 + 89246565 89246572 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr7 + 95009033 95009040 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr11 - 95136878 95136885 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr7 + 96662401 96662408 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 + 100224360 100224367 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr12 - 101560093 101560100 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr10 - 102724124 102724131 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr7 + 105303196 105303203 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 - 109461227 109461234 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 - 111062817 111062824 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 - 113078007 113078014 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr5 - 113521035 113521042 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr10 - 114720145 114720152 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 + 115521970 115521977 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 - 116685559 116685566 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr7 - 117414755 117414762 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr10 - 119239790 119239797 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr2 + 120235399 120235406 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr7 - 121005201 121005208 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr7 - 121290078 121290085 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr2 + 121640102 121640109 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr10 + 126172989 126172996 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 + 133936587 133936594 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr7 + 140529675 140529682 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 + 143448133 143448140 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr5 - 143983119 143983126 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr3 - 156914435 156914442 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 + 162018013 162018020 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 - 162082213 162082220 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr6 + 165593181 165593188 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr6 - 167829880 167829887 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr3 + 169544752 169544759 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr4 + 169931010 169931017 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 - 180006879 180006886 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 + 183066687 183066694 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 + 203314661 203314668 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr2 + 203536807 203536814 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 + 205281309 205281316 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 - 214609813 214609820 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 + 221591499 221591506 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 - 224005083 224005090 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 + 226432196 226432203 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 + 228662563 228662570 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 - 231645784 231645791 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 - 231729113 231729120 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 + 232156300 232156307 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 + 233345464 233345471 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 + 236078337 236078344 1.81e-05 0.0777 agcaaact
AGCAAACT DREME-17 chr1 - 240275361 240275368 1.81e-05 0.0777 AGCAAACT
AGCAAACT DREME-17 chr1 - 241425252 241425259 1.81e-05 0.0777 AGCAAACT

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_23 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif AGCAAACT /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_23 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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