Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GGAWTAC 7 GGAATAC
GCTGHATA 8 GCTGCATA
CTTTTTYA 8 CTTTTTTA
ARGGACAT 8 AAGGACAT
CTTHATCC 8 CTTCATCC
GAACTCM 7 GAACTCA
ATGGTGWA 8 ATGGTGTA
GGYACATA 8 GGCACATA
GARACCA 7 GAAACCA
AGTAGAGA 8 AGTAGAGA
AAAATGT 7 AAAATGT
GGAGGCY 7 GGAGGCT
AAAAKACA 8 AAAATACA
AAATTAGC 8 AAATTAGC
GCCTGRCC 8 GCCTGGCC
GGMWGGA 7 GGATGGA
AGCAAACT 8 AGCAAACT
AAAAGRA 7 AAAAGGA
SAGAATGA 8 GAGAATGA
GAYCTCA 7 GACCTCA
CRCGCC 6 CACGCC
AGTCTATC 8 AGTCTATC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.278 C 0.222 G 0.222 T 0.278

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CTTTTTYA DREME-3 chr18 + 760043 760050 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr12 + 1733942 1733949 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chrX + 2390821 2390828 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chrX + 2390990 2390997 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr17 + 8682772 8682779 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 16628801 16628808 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr5 + 17376076 17376083 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr11 + 17426019 17426026 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr9 + 19265787 19265794 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 20721295 20721302 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 22105136 22105143 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr10 + 22508390 22508397 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr3 + 23849691 23849698 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr22 + 25572191 25572198 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr12 + 26057461 26057468 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr19 + 29545665 29545672 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr19 + 29916055 29916062 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr19 + 30291022 30291029 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr19 + 30346679 30346686 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr19 + 30398750 30398757 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 34329983 34329990 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr10 + 35406192 35406199 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr19 + 37076707 37076714 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr4 + 37923288 37923295 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr17 + 38296816 38296823 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr17 + 39347024 39347031 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr19 + 44220114 44220121 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 47691536 47691543 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 47745457 47745464 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr18 + 49293159 49293166 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 52995977 52995984 2.83e-05 0.111 CTTtttta
CTTTTTYA DREME-3 chr5 + 55991073 55991080 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 56562922 56562929 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr14 + 60882417 60882424 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr3 + 61711105 61711112 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr10 + 61977191 61977198 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 63826427 63826434 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr16 + 66567490 66567497 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr15 + 67789135 67789142 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr5 + 69521214 69521221 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr18 + 70319167 70319174 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr18 + 70319467 70319474 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 72979011 72979018 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr14 + 73490495 73490502 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr15 + 75626573 75626580 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 78021310 78021317 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr5 + 78047035 78047042 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 79361274 79361281 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr5 + 81714241 81714248 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr16 + 85548581 85548588 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr12 + 95016288 95016295 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr11 + 95136940 95136947 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 109461293 109461300 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 111063066 111063073 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 113078069 113078076 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 113935366 113935373 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr7 + 117414816 117414823 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr10 + 119239852 119239859 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr7 + 121005263 121005270 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr7 + 121290141 121290148 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr6 + 142229710 142229717 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr5 + 143983181 143983188 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr3 + 156914497 156914504 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr2 + 173163461 173163468 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr2 + 173163525 173163532 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr2 + 173163589 173163596 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 180006943 180006950 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 214609876 214609883 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 224005145 224005152 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 231645846 231645853 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 231729175 231729182 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 240275423 240275430 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr1 + 241425314 241425321 2.83e-05 0.111 ctttttta
CTTTTTYA DREME-3 chr12 - 1317224 1317231 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr17 - 1565290 1565297 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chrX - 2480300 2480307 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr17 - 2653090 2653097 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 3613777 3613784 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 7031152 7031159 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr8 - 8299932 8299939 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr8 - 11432883 11432890 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr10 - 15583183 15583190 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr5 - 16611076 16611083 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr10 - 17195273 17195280 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 17236762 17236769 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 21094441 21094448 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr18 - 22622019 22622026 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr3 - 24413834 24413841 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr3 - 24421018 24421025 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 26029397 26029404 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr8 - 27813138 27813145 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr22 - 28463583 28463590 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 28600640 28600647 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr10 - 29614481 29614488 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr8 - 30920628 30920635 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 34884237 34884244 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr19 - 35462003 35462010 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr17 - 35703499 35703506 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 37973901 37973908 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr5 - 38516877 38516884 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr19 - 40567430 40567437 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr15 - 40590433 40590440 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 43883260 43883267 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr18 - 44800951 44800958 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr19 - 44862523 44862530 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 47089666 47089673 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 47275325 47275332 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr17 - 47492817 47492824 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr10 - 50568968 50568975 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 54040734 54040741 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr14 - 57258367 57258374 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr17 - 58678495 58678502 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr17 - 59021446 59021453 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr18 - 63201647 63201654 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr15 - 67028620 67028627 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr5 - 67837400 67837407 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr10 - 68720224 68720231 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr15 - 71004716 71004723 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr10 - 74457687 74457694 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr15 - 77400477 77400484 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr15 - 82534683 82534690 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 84510831 84510838 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 87709238 87709245 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr16 - 89246502 89246509 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr7 - 95008971 95008978 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 100224111 100224118 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr7 - 105303134 105303141 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 109461444 109461451 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 115521908 115521915 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 115941163 115941170 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr2 - 121640040 121640047 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr10 - 126172927 126172934 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr7 - 140529615 140529622 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 143448067 143448074 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 - 165593119 165593126 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr3 - 169544690 169544697 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 183066625 183066632 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 203314599 203314606 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr2 - 203536745 203536752 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 205281247 205281254 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 221591437 221591444 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 226432134 226432141 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 231418427 231418434 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 231948275 231948282 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 232156238 232156245 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 233345402 233345409 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 234642626 234642633 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 235904006 235904013 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr1 - 236078275 236078282 2.83e-05 0.111 CTTTTTTA
CTTTTTYA DREME-3 chr6 + 7993556 7993563 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr6 + 7993618 7993625 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr3 + 13265754 13265761 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr19 + 29588289 29588296 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr5 + 32214564 32214571 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr11 + 32891619 32891626 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr19 + 36070686 36070693 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr6 + 36352653 36352660 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr5 + 36370286 36370293 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr8 + 37576102 37576109 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr17 + 38905079 38905086 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr19 + 40567539 40567546 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr17 + 46839860 46839867 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr12 + 49787883 49787890 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr10 + 52637075 52637082 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr17 + 81507819 81507826 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr15 + 101946216 101946223 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr7 + 108023167 108023174 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr7 + 112202023 112202030 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr10 + 112969323 112969330 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr6 + 129184196 129184203 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr9 + 132358002 132358009 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr5 + 155006461 155006468 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr1 + 162082275 162082282 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chr1 + 162150309 162150316 5.09e-05 0.16 ctttttca
CTTTTTYA DREME-3 chrX - 2480185 2480192 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chrX - 13679879 13679886 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr10 - 17219930 17219937 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chrX - 19511988 19511995 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr6 - 26313939 26313946 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr6 - 28896462 28896469 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr19 - 33312995 33313002 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr5 - 51860750 51860757 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr1 - 84510895 84510902 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr10 - 88663338 88663345 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr4 - 169930948 169930955 5.09e-05 0.16 CTTTTTCA
CTTTTTYA DREME-3 chr5 - 178295783 178295790 5.09e-05 0.16 CTTTTTCA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_11 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif CTTTTTYA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_11
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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