# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:22 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:22 PDT 2018) # host: surya # when: Mon Jun 11 07:42:20 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.283 C 0.216 G 0.215 T 0.287 MOTIF GGAWTAC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GGAWTAC GTAWTCC 196 6 1.9e-058 5.5e-054 # GGAATAC GTATTCC 161 5 8.7e-047 2.5e-042 # GGATTAC GTAATCC 38 1 4.1e-011 1.2e-006 letter-probability matrix: alength= 4 w= 7 nsites= 200 E= 5.5e-054 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.810000 0.000000 0.000000 0.190000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCTGHATA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GCTGHATA TATDCAGC 183 4 3.5e-056 9.9e-052 # GCTGCATA TATGCAGC 155 1 2.1e-050 5.8e-046 # GCTGAATA TATTCAGC 11 0 4.7e-004 1.3e+001 # GCTGTATA TATACAGC 17 3 1.2e-003 3.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 183 E= 9.9e-052 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.060109 0.846995 0.000000 0.092896 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTTTTTYA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTTTTTYA TRAAAAAG 149 6 2.3e-041 6.5e-037 # CTTTTTTA TAAAAAAG 126 3 4.7e-037 1.3e-032 # CTTTTTCA TGAAAAAG 23 3 3.7e-005 1.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 149 E= 6.5e-037 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.154362 0.000000 0.845638 1.000000 0.000000 0.000000 0.000000 MOTIF ARGGACAT DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ARGGACAT ATGTCCYT 138 6 1.4e-037 3.9e-033 # AAGGACAT ATGTCCTT 110 3 1.2e-031 3.5e-027 # AGGGACAT ATGTCCCT 90 3 4.6e-025 1.3e-020 letter-probability matrix: alength= 4 w= 8 nsites= 205 E= 3.9e-033 1.000000 0.000000 0.000000 0.000000 0.546341 0.000000 0.453659 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CTTHATCC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTTHATCC GGATDAAG 114 4 9.3e-032 2.6e-027 # CTTCATCC GGATGAAG 69 0 2.1e-022 5.9e-018 # CTTTATCC GGATAAAG 32 2 2.4e-008 6.6e-004 # CTTAATCC GGATTAAG 25 2 2.3e-006 6.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 129 E= 2.6e-027 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.193798 0.542636 0.000000 0.263566 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAACTCM DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GAACTCM KGAGTTC 126 8 1.5e-031 4.3e-027 # GAACTCA TGAGTTC 90 5 6.1e-023 1.7e-018 # GAACTCC GGAGTTC 36 3 1.1e-008 3.2e-004 letter-probability matrix: alength= 4 w= 7 nsites= 126 E= 4.3e-027 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 MOTIF ATGGTGWA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATGGTGWA TWCACCAT 98 6 1.7e-024 4.8e-020 # ATGGTGTA TACACCAT 74 4 5.8e-019 1.6e-014 # ATGGTGAA TTCACCAT 24 2 4.3e-006 1.2e-001 letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 4.8e-020 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.244898 0.000000 0.000000 0.755102 1.000000 0.000000 0.000000 0.000000 MOTIF GGYACATA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GGYACATA TATGTRCC 83 2 5.2e-024 1.4e-019 # GGCACATA TATGTGCC 64 1 3.2e-019 8.8e-015 # GGTACATA TATGTACC 19 1 1.8e-005 4.8e-001 letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 1.4e-019 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.771084 0.000000 0.228916 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GARACCA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GARACCA TGGTYTC 105 15 1.0e-019 2.7e-015 # GAAACCA TGGTTTC 62 8 2.6e-012 7.0e-008 # GAGACCA TGGTCTC 43 7 6.0e-008 1.7e-003 letter-probability matrix: alength= 4 w= 7 nsites= 105 E= 2.7e-015 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.590476 0.000000 0.409524 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGTAGAGA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AGTAGAGA TCTCTACT 41 0 2.2e-013 6.1e-009 # AGTAGAGA TCTCTACT 41 0 2.2e-013 6.1e-009 letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 6.1e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAATGT DREME-11 # Word RC Word Pos Neg P-value E-value # BEST AAAATGT ACATTTT 91 20 2.6e-013 7.2e-009 # AAAATGT ACATTTT 91 20 2.6e-013 7.2e-009 letter-probability matrix: alength= 4 w= 7 nsites= 91 E= 7.2e-009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GGAGGCY DREME-12 # Word RC Word Pos Neg P-value E-value # BEST GGAGGCY RGCCTCC 70 10 3.2e-013 8.8e-009 # GGAGGCT AGCCTCC 35 4 1.1e-007 3.1e-003 # GGAGGCC GGCCTCC 36 6 9.7e-007 2.6e-002 letter-probability matrix: alength= 4 w= 7 nsites= 74 E= 8.8e-009 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.486486 0.000000 0.513514 MOTIF AAAAKACA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AAAAKACA TGTMTTTT 54 7 8.3e-011 2.3e-006 # AAAATACA TGTATTTT 37 4 3.2e-008 8.8e-004 # AAAAGACA TGTCTTTT 17 3 1.2e-003 3.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 2.3e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.314815 0.685185 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAATTAGC DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AAATTAGC GCTAATTT 38 2 4.3e-010 1.2e-005 # AAATTAGC GCTAATTT 38 2 4.3e-010 1.2e-005 letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 1.2e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCCTGRCC DREME-15 # Word RC Word Pos Neg P-value E-value # BEST GCCTGRCC GGYCAGGC 34 2 6.3e-009 1.7e-004 # GCCTGGCC GGCCAGGC 24 2 4.3e-006 1.2e-001 # GCCTGACC GGTCAGGC 10 0 9.4e-004 2.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.7e-004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.294118 0.000000 0.705882 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGMWGGA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST GGMWGGA TCCWKCC 82 25 3.3e-009 9.0e-005 # GGCAGGA TCCTGCC 23 6 1.0e-003 2.8e+001 # GGATGGA TCCATCC 26 8 1.3e-003 3.5e+001 # GGAAGGA TCCTTCC 14 3 6.1e-003 1.6e+002 # GGCTGGA TCCAGCC 22 8 7.4e-003 2.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 93 E= 9.0e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.505376 0.494624 0.000000 0.000000 0.440860 0.000000 0.000000 0.559140 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGCAAACT DREME-17 # Word RC Word Pos Neg P-value E-value # BEST AGCAAACT AGTTTGCT 35 3 2.2e-008 5.8e-004 # AGCAAACT AGTTTGCT 35 3 2.2e-008 5.8e-004 letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 5.8e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AAAAGRA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST AAAAGRA TYCTTTT 79 27 6.3e-008 1.7e-003 # AAAAGGA TCCTTTT 53 17 5.4e-006 1.5e-001 # AAAAGAA TTCTTTT 30 12 3.4e-003 9.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 86 E= 1.7e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.383721 0.000000 0.616279 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF SAGAATGA DREME-19 # Word RC Word Pos Neg P-value E-value # BEST SAGAATGA TCATTCTS 40 7 3.4e-007 9.0e-003 # GAGAATGA TCATTCTC 24 3 2.1e-005 5.5e-001 # CAGAATGA TCATTCTG 17 4 3.4e-003 9.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 9.0e-003 0.000000 0.414634 0.585366 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAYCTCA DREME-20 # Word RC Word Pos Neg P-value E-value # BEST GAYCTCA TGAGRTC 48 11 3.4e-007 9.2e-003 # GACCTCA TGAGGTC 27 6 1.3e-004 3.6e+000 # GATCTCA TGAGATC 21 5 1.1e-003 3.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 9.2e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.580000 0.000000 0.420000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CRCGCC DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CRCGCC GGCGYG 51 13 5.0e-007 1.3e-002 # CACGCC GGCGTG 35 6 1.7e-006 4.5e-002 # CGCGCC GGCGCG 22 8 7.4e-003 2.0e+002 letter-probability matrix: alength= 4 w= 6 nsites= 59 E= 1.3e-002 0.000000 1.000000 0.000000 0.000000 0.610169 0.000000 0.389831 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGTCTATC DREME-22 # Word RC Word Pos Neg P-value E-value # BEST AGTCTATC GATAGACT 19 0 1.7e-006 4.3e-002 # AGTCTATC GATAGACT 19 0 1.7e-006 4.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.3e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 78.75 seconds