# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:22 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF580.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:22 PDT 2018)
#        host: surya
#        when: Mon Jun 11 07:48:07 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.229 C 0.272 G 0.274 T 0.225


MOTIF HCCGGAAR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    HCCGGAAR   YTTCCGGD        167          8   1.8e-045   6.3e-041
#         ACCGGAAG   CTTCCGGT         94          1   5.0e-029   1.7e-024
#         CCCGGAAG   CTTCCGGG         37          2   8.5e-010   2.9e-005
#         ACCGGAAA   TTTCCGGT         26          3   6.1e-006   2.1e-001
#         CCCGGAAA   TTTCCGGG         12          1   1.6e-003   5.6e+001
#         TCCGGAAG   CTTCCGGA         12          1   1.6e-003   5.6e+001
#         TCCGGAAA   TTTCCGGA          7          0   7.7e-003   2.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 195 E= 6.3e-041
0.661538 0.256410 0.000000 0.082051
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.230769 0.000000 0.769231 0.000000


MOTIF CTACC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       CTACC      GGTAG        185         75   5.3e-015   1.8e-010
#            CTACC      GGTAG        185         75   5.3e-015   1.8e-010

letter-probability matrix: alength= 4 w= 5 nsites= 215 E= 1.8e-010
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGGAAGTD DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGAAGTD   HACTTCCG         32          0   1.5e-010   5.0e-006
#         CGGAAGTG   CACTTCCG         14          0   5.7e-005   1.9e+000
#         CGGAAGTA   TACTTCCG          9          0   1.9e-003   6.3e+001
#         CGGAAGTT   AACTTCCG          9          0   1.9e-003   6.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 5.0e-006
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.264706 0.000000 0.470588 0.264706


MOTIF CMGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CMGGAA     TTCCKG        121         52   7.9e-009   2.6e-004
#           CCGGAA     TTCCGG         65         22   9.5e-007   3.1e-002
#           CAGGAA     TTCCTG         69         30   2.8e-005   9.1e-001

letter-probability matrix: alength= 4 w= 6 nsites= 140 E= 2.6e-004
0.000000 1.000000 0.000000 0.000000
0.514286 0.485714 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 19.70 seconds