# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF563.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF563.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF563.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF563.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:30:15 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF563.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:30:16 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:55:13 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.191 C 0.310 G 0.307 T 0.193


MOTIF GCCACDD DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GCCACDD    HHGTGGC        424        122   9.7e-072   2.8e-067
#          GCCACGG    CCGTGGC        145         15   1.0e-031   3.0e-027
#          GCCACGT    ACGTGGC         96          6   7.3e-024   2.1e-019
#          GCCACAG    CTGTGGC        125         38   6.5e-014   1.8e-009
#          GCCACAT    ATGTGGC         54         11   1.3e-008   3.8e-004
#          GCCACTG    CAGTGGC         81         27   2.5e-008   7.1e-004
#          GCCACGA    TCGTGGC         34         10   1.5e-004   4.3e+000
#          GCCACTA    TAGTGGC         21          4   4.0e-004   1.1e+001
#          GCCACTT    AAGTGGC         34         12   6.7e-004   1.9e+001
#          GCCACAA    TTGTGGC         35         15   2.8e-003   7.8e+001

letter-probability matrix: alength= 4 w= 7 nsites= 760 E= 2.8e-067
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.334211 0.000000 0.457895 0.207895
0.123684 0.000000 0.588158 0.288158


MOTIF CGTGGHY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CGTGGHY    RDCCACG        189         41   4.2e-029   1.1e-024
#          CGTGGCC    GGCCACG         42          5   6.9e-009   1.8e-004
#          CGTGGTC    GACCACG         52         11   4.0e-008   1.1e-003
#          CGTGGAT    ATCCACG         31          3   2.8e-007   7.4e-003
#          CGTGGCT    AGCCACG         31          6   1.6e-005   4.2e-001
#          CGTGGAC    GTCCACG         39         13   1.5e-004   4.1e+000
#          CGTGGTT    AACCACG         22          6   1.7e-003   4.5e+001

letter-probability matrix: alength= 4 w= 7 nsites= 263 E= 1.1e-024
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.342205 0.323194 0.000000 0.334601
0.000000 0.593156 0.000000 0.406844


MOTIF GTGGMW DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GTGGMW     WKCCAC        256        129   2.2e-015   5.6e-011
#           GTGGCT     AGCCAC        103         48   1.0e-006   2.7e-002
#           GTGGCA     TGCCAC         99         50   1.2e-005   3.0e-001
#           GTGGAA     TTCCAC         57         23   5.5e-005   1.4e+000
#           GTGGAT     ATCCAC         57         23   5.5e-005   1.4e+000

letter-probability matrix: alength= 4 w= 6 nsites= 430 E= 5.6e-011
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.418605 0.581395 0.000000 0.000000
0.472093 0.000000 0.000000 0.527907


MOTIF CCACG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       CCACG      CGTGG        191         98   2.0e-010   5.1e-006
#            CCACG      CGTGG        191         98   2.0e-010   5.1e-006

letter-probability matrix: alength= 4 w= 5 nsites= 279 E= 5.1e-006
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGRAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       AGRAA      TTYCT        146         81   1.1e-006   2.6e-002
#            AGGAA      TTCCT         89         49   1.9e-004   4.8e+000
#            AGAAA      TTTCT         67         37   1.4e-003   3.4e+001

letter-probability matrix: alength= 4 w= 5 nsites= 187 E= 2.6e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.459893 0.000000 0.540107 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 72.88 seconds