# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:29:58 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:29:58 PST 2017) # host: surya # when: Mon Dec 18 16:41:45 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.356 C 0.152 G 0.153 T 0.339 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 487 88 7.1e-128 1.7e-123 # TAAATAAA TTTATTTA 487 88 7.1e-128 1.7e-123 letter-probability matrix: alength= 4 w= 8 nsites= 2467 E= 1.7e-123 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWC GWCTC 391 61 6.3e-093 1.5e-088 # GAGAC GTCTC 328 30 4.0e-088 9.7e-084 # GAGTC GACTC 232 35 3.4e-046 8.3e-042 letter-probability matrix: alength= 4 w= 5 nsites= 592 E= 1.5e-088 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.687500 0.000000 0.000000 0.312500 0.000000 1.000000 0.000000 0.000000 MOTIF CAGAGY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CAGAGY RCTCTG 207 17 5.0e-051 1.1e-046 # CAGAGC GCTCTG 134 14 5.1e-029 1.2e-024 # CAGAGT ACTCTG 73 3 1.1e-019 2.6e-015 letter-probability matrix: alength= 4 w= 6 nsites= 214 E= 1.1e-046 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.654206 0.000000 0.345794 MOTIF CATCTCAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CATCTCAA TTGAGATG 72 2 1.7e-020 3.9e-016 # CATCTCAA TTGAGATG 72 2 1.7e-020 3.9e-016 letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 3.9e-016 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTGK DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCTGK MCAGG 227 101 1.5e-016 3.3e-012 # CCTGG CCAGG 168 60 6.2e-016 1.4e-011 # CCTGT ACAGG 77 46 2.1e-003 4.7e+001 letter-probability matrix: alength= 4 w= 5 nsites= 272 E= 3.3e-012 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.709559 0.290441 MOTIF CAWGAG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAWGAG CTCWTG 73 14 9.1e-012 2.0e-007 # CAAGAG CTCTTG 50 9 1.3e-008 2.7e-004 # CATGAG CTCATG 23 5 4.0e-004 8.6e+000 letter-probability matrix: alength= 4 w= 6 nsites= 74 E= 2.0e-007 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.689189 0.000000 0.000000 0.310811 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CGCCGCCG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CGCCGCCG CGGCGGCG 30 1 1.1e-008 2.2e-004 # CGCCGCCG CGGCGGCG 30 1 1.1e-008 2.2e-004 letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 2.2e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CAC GTG 422 329 1.9e-008 4.0e-004 # CAC GTG 422 329 1.9e-008 4.0e-004 letter-probability matrix: alength= 4 w= 3 nsites= 845 E= 4.0e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CRAAACTC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CRAAACTC GAGTTTYG 21 0 4.0e-007 6.6e-003 # CGAAACTC GAGTTTCG 11 0 4.7e-004 7.7e+000 # CAAAACTC GAGTTTTG 10 0 9.4e-004 1.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 6.6e-003 0.000000 1.000000 0.000000 0.000000 0.476190 0.000000 0.523810 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 29.86 seconds