# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 AAATAAATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 AAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 3.6e-459 4.9e-462 -1062.21 0.0 26 462 431 489 0.05628 2.1e-464 230 1 GAGYRAGACTCYGTCTCAAAAA MEME-2 GAGYRAGACTCYGTCTCAAAAA 6.6e-159 8.8e-162 -370.84 0.0 89 479 358 465 0.18580 3.7e-164 239 1 WAAATAAAT MEME-3 WAAATAAAT 3.6e-319 4.8e-322 -739.86 0.0 64 492 449 507 0.13008 2.0e-324 245 2 TAAATAAA DREME-1 TAAATAAA 8.8e-383 1.2e-385 -886.33 0.0 49 493 448 492 0.09939 4.8e-388 246 2 GAGWC DREME-2 GAGAC 1.1e-006 1.5e-009 -20.33 0.0 96 496 175 554 0.19355 6.0e-012 247 2 CAGAGY DREME-3 CAGAGY 9.1e-048 1.2e-050 -114.93 0.0 109 495 234 411 0.22020 4.9e-053 247 2 CATCTCAA DREME-4 CATCTCAA 4.7e-034 6.3e-037 -83.35 0.0 81 493 71 89 0.16430 2.6e-039 246 2 CGCCGCCG DREME-7 CGCCGCCG 1.8e-001 2.4e-004 -8.34 0.0 161 493 55 96 0.32657 9.7e-007 246 2 CRAAACTC DREME-9 CRAAACTC 1.6e-033 2.2e-036 -82.12 0.0 97 493 166 316 0.19675 8.8e-039 246 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 3.9e-089 5.3e-092 -210.17 0.0 68 490 275 533 0.13878 2.2e-094 244 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 7.6e-038 1.0e-040 -92.08 0.0 66 492 202 549 0.13415 4.2e-043 245 3 M0216_1.02 (NHLH2)_(Mus_musculus)_(DBD_1.00) NGCAGCTGYN 3.6e0000 4.8e-003 -5.34 0.0 401 491 512 582 0.81670 2.0e-005 245 3 M0396_1.02 (OSR2)_(Mus_musculus)_(DBD_1.00) WACRGTAGCN 6.0e-003 8.1e-006 -11.73 0.0 351 491 482 593 0.71487 3.3e-008 245 3 M0398_1.02 (ZSCAN10)_(Mus_musculus)_(DBD_0.82) NGKRAGTGCNN 4.1e-037 5.5e-040 -90.40 0.0 162 490 344 561 0.33061 2.2e-042 244 3 M0422_1.02 (ZIC5)_(Mus_musculus)_(DBD_0.99) SYRGGGGGTM 2.5e-003 3.3e-006 -12.62 0.0 333 491 457 584 0.67821 1.4e-008 245 3 M0424_1.02 (SNAI3)_(Mus_musculus)_(DBD_0.75) NNTGACAKNN 1.2e-005 1.6e-008 -17.96 0.0 109 491 199 588 0.22200 6.5e-011 245 3 M0431_1.02 (OSR1)_(Mus_musculus)_(DBD_1.00) MCRGTAGCN 7.3e-005 9.8e-008 -16.14 0.0 314 492 450 595 0.63821 4.0e-010 245 3 M0432_1.02 (ZFP161)_(Mus_musculus)_(DBD_1.00) NNCGYGCHH 1.7e-002 2.3e-005 -10.68 0.0 400 492 390 431 0.81301 9.4e-008 245 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 1.3e-197 1.8e-200 -459.94 0.0 57 491 371 562 0.11609 7.2e-203 245 3 M0437_1.02 (ZNF32)_(Mus_musculus)_(DBD_0.99) TATRTATRT 2.2e-152 2.9e-155 -355.82 0.0 54 492 308 513 0.10976 1.2e-157 245 3 M0442_1.02 (ZBTB3)_(Mus_musculus)_(DBD_1.00) NNTGCAGYG 4.4e-044 5.9e-047 -106.45 0.0 198 492 418 595 0.40244 2.4e-049 245 3 M0608_1.02 MLL NNNRSCGNDN 4.7e0000 6.3e-003 -5.07 0.0 215 491 267 504 0.43788 2.6e-005 245 3 M0610_1.02 TET1 NNYRCGYWN 1.4e-003 1.9e-006 -13.17 0.0 346 492 372 454 0.70325 7.8e-009 245 3 M0633_1.02 DMRT2 KAATKTATWN 1.7e-196 2.3e-199 -457.38 0.0 51 491 347 536 0.10387 9.4e-202 245 3 M0718_1.02 FOXK1 DNRTMAACAH 3.3e-062 4.4e-065 -148.19 0.0 55 491 225 570 0.11202 1.8e-067 245 3 M0719_1.02 FOXG1 RTAAACAW 5.5e-056 7.4e-059 -133.84 0.0 47 493 194 546 0.09533 3.0e-061 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 1.7e-122 2.2e-125 -287.02 0.0 53 489 293 567 0.10838 9.1e-128 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 4.4e-037 5.9e-040 -90.33 0.0 47 493 169 563 0.09533 2.4e-042 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 1.1e-262 1.5e-265 -609.78 0.0 49 491 404 564 0.09980 6.1e-268 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 1.1e-221 1.5e-224 -515.38 0.0 57 491 394 569 0.11609 6.1e-227 245 3 M0894_1.02 LBX1 TTAATTAG 6.6e-001 8.8e-004 -7.04 0.0 383 493 435 507 0.77688 3.6e-006 246 3 M0896_1.02 VENTX TTAATTAG 1.9e-051 2.5e-054 -123.42 0.0 51 493 192 530 0.10345 1.0e-056 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 1.1e-013 1.4e-016 -36.48 0.0 83 491 175 536 0.16904 5.9e-019 245 3 M0900_1.02 SHOX HTAATTRV 1.4e0000 1.9e-003 -6.25 0.0 417 493 482 529 0.84584 7.8e-006 246 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 2.6e-066 3.5e-069 -157.62 0.0 49 491 208 526 0.09980 1.4e-071 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 8.2e-001 1.1e-003 -6.81 0.0 462 492 502 512 0.93902 4.5e-006 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 1.7e0000 2.3e-003 -6.08 0.0 393 493 435 499 0.79716 9.3e-006 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 2.5e-001 3.3e-004 -8.01 0.0 416 494 500 549 0.84211 1.3e-006 246 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 2.4e0000 3.2e-003 -5.75 0.0 456 492 506 521 0.92683 1.3e-005 245 3 M1030_1.02 (NKX2-3)_(Mus_musculus)_(DBD_1.00) NVYACTTVD 1.7e0000 2.3e-003 -6.06 0.0 292 492 399 587 0.59350 9.6e-006 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 5.7e-022 7.6e-025 -55.53 0.0 67 491 170 535 0.13646 3.1e-027 245 3 M1359_1.02 (MYPOP)_(Mus_musculus)_(DBD_0.97) NWTTGCGCCR 5.8e-002 7.7e-005 -9.47 0.0 211 491 254 465 0.42974 3.2e-007 245 3 M1528_1.02 (RFX6)_(Mus_musculus)_(DBD_0.66) NCNTRGYWAC 2.5e-016 3.4e-019 -42.54 0.0 127 491 260 591 0.25866 1.4e-021 245 3 M1529_1.02 (RFX7)_(Mus_musculus)_(DBD_1.00) VCNTRGYAAC 1.1e-002 1.5e-005 -11.13 0.0 317 491 439 587 0.64562 6.0e-008 245 3 M1582_1.02 (HMG20B)_(Mus_musculus)_(DBD_0.94) NWAWATAATWN 1.8e-119 2.5e-122 -280.01 0.0 48 490 266 523 0.09796 1.0e-124 244 3 M1583_1.02 (BBX)_(Mus_musculus)_(DBD_0.99) TTCATTGA 3.9e-011 5.2e-014 -30.59 0.0 201 493 281 473 0.40771 2.1e-016 246 3 M1668_1.02 PRKRIR NYCVNVSKRNNN 7.4e-013 9.9e-016 -34.55 0.0 313 489 476 593 0.64008 4.0e-018 244 3 M1882_1.02 IRF1 AAANNGAAAGTGAAASYRRRN 2.6e-008 3.5e-011 -24.09 0.0 102 480 177 498 0.21250 1.4e-013 239 3 M1884_1.02 MEF2A DKCTAAAAATAGMHH 6.3e-012 8.4e-015 -32.41 0.0 70 486 153 537 0.14403 3.5e-017 242 3 M1906_1.02 SP1 RGGGGMGGGGC 5.0e-007 6.7e-010 -21.13 0.0 278 490 408 576 0.56735 2.7e-012 244 3 M1915_1.02 (ZNF76)_(Xenopus_laevis)_(DBD_0.84) KCRWKGMATBMTGGGARDTV 1.8e0000 2.5e-003 -6.01 0.0 129 481 189 534 0.26819 1.0e-005 240 3 M1963_1.02 (ZFY)_(Mus_musculus)_(DBD_0.97) SSSGSCBVGGCCTS 2.0e-005 2.7e-008 -17.44 0.0 273 487 396 574 0.56057 1.1e-010 243 3 M1968_1.02 EBF1 TCCCWGGGGRV 1.7e0000 2.3e-003 -6.06 0.0 286 490 379 563 0.58367 9.5e-006 244 3 M2273_1.02 E2F6 RGGCGGGARRV 5.0e-008 6.7e-011 -23.42 0.0 262 490 394 577 0.53469 2.8e-013 244 3 M2275_1.02 ELF1 RRAVCMGGAAGTG 3.9e0000 5.2e-003 -5.27 0.0 284 488 366 547 0.58197 2.1e-005 243 3 M2278_1.02 FOS DVTGASTCATB 6.6e-001 8.9e-004 -7.02 0.0 288 490 346 504 0.58776 3.6e-006 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 4.0e-152 5.4e-155 -355.22 0.0 56 486 327 556 0.11523 2.2e-157 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 2.3e-120 3.1e-123 -282.08 0.0 62 488 300 535 0.12705 1.3e-125 243 3 M2303_1.02 NR2C2 TGACCTYTGACCYCB 3.7e-003 5.0e-006 -12.20 0.0 208 486 307 564 0.42798 2.1e-008 242 3 M2305_1.02 NRF1 YGCGCABGCGC 1.3e-001 1.7e-004 -8.66 0.0 146 490 178 437 0.29796 7.1e-007 244 3 M2307_1.02 PRDM1 DRAAAGTGAAAGTRA 9.3e-001 1.2e-003 -6.69 0.0 94 486 149 548 0.19342 5.2e-006 242 3 M2314_1.02 SP2 SSVVRGRGGCGGGRC 1.1e-008 1.4e-011 -24.97 0.0 272 486 408 573 0.55967 5.9e-014 242 3 M2385_1.02 FOXP2 RWGTAAACAVR 2.3e-113 3.1e-116 -265.97 0.0 46 490 262 550 0.09388 1.3e-118 244 3 M2387_1.02 SREBF1 RTGGGGTGAB 4.6e-004 6.1e-007 -14.30 0.0 241 491 345 562 0.49084 2.5e-009 245 3 M2388_1.02 SREBF2 RTGGGGTGAY 3.2e-004 4.3e-007 -14.66 0.0 243 491 342 551 0.49491 1.8e-009 245 3 M2392_1.02 RFX2 GTYDCCATGGCAACVRVNN 4.9e-001 6.6e-004 -7.32 0.0 126 482 180 509 0.26141 2.8e-006 240 3 M4344_1.02 (ARID2)_(Saccharomyces_cerevisiae)_(DBD_0.26) SGTTGCYA 3.6e-001 4.8e-004 -7.64 0.0 179 493 254 552 0.36308 2.0e-006 246 3 M4452_1.02 BATF TYYYRWWATGASTCA 2.5e-022 3.4e-025 -56.34 0.0 72 486 176 520 0.14815 1.4e-027 242 3 M4459_1.02 EGR1 SBGCGKGGGCGGVRGSGSGG 1.1e-007 1.4e-010 -22.66 0.0 339 481 445 531 0.70478 6.0e-013 240 3 M4467_1.02 MEF2C DDKCYAAAAATAGMH 4.9e-040 6.6e-043 -97.13 0.0 70 486 214 550 0.14403 2.7e-045 242 3 M4471_1.02 PAX5 BCAGYSRAGCGTGAC 2.8e-011 3.8e-014 -30.91 0.0 188 486 319 574 0.38683 1.6e-016 242 3 M4476_1.02 RFX5 TCABYWGTTGCYRGG 2.5e-006 3.4e-009 -19.51 0.0 310 486 445 580 0.63786 1.4e-011 242 3 M4479_1.02 TCF12 VSAGCAGSTGB 9.6e0000 1.3e-002 -4.35 0.0 350 490 453 576 0.71429 5.3e-005 244 3 M4509_1.02 POU5F1 ATYTGCATRACAAWGRV 5.1e-001 6.9e-004 -7.28 0.0 76 484 109 454 0.15702 2.9e-006 241 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 1.4e-010 1.8e-013 -29.33 0.0 288 486 401 529 0.59259 7.6e-016 242 3 M4537_1.02 E2F4 GGCGGGAARWTBVRR 5.0e-006 6.7e-009 -18.82 0.0 326 486 440 551 0.67078 2.8e-011 242 3 M4551_1.02 ZNF274 YTCAYACTGGAGAGAAA 1.4e-028 1.9e-031 -70.73 0.0 152 484 219 346 0.31405 7.9e-034 241 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 3.0e-003 4.0e-006 -12.43 0.0 281 487 354 508 0.57700 1.6e-008 243 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 6.5e-166 8.8e-169 -386.96 0.0 58 486 347 565 0.11934 3.6e-171 242 3 M4572_1.02 MAFF TGCTGACTCAGCAWW 2.1e-017 2.9e-020 -44.99 0.0 286 486 386 484 0.58848 1.2e-022 242 3 M4604_1.02 ZNF263 RRGGAGGASGVVGRGGRGGRG 6.5e-010 8.8e-013 -27.76 0.0 268 480 405 563 0.55833 3.7e-015 239 3 M4612_1.02 CTCFL CCRSCAGGGGGCGCY 5.9e-011 7.9e-014 -30.17 0.0 220 486 300 470 0.45267 3.3e-016 242 3 M4619_1.02 FOSL1 BGGTGASTCAT 4.8e-003 6.5e-006 -11.94 0.0 326 490 389 500 0.66531 2.7e-008 244 3 M4623_1.02 JUNB NDRTGASTCATNYHY 8.7e0000 1.2e-002 -4.45 0.0 286 486 341 506 0.58848 4.8e-005 242 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 5.0e-004 6.6e-007 -14.22 0.0 284 484 330 459 0.58678 2.8e-009 241 3 M4636_1.02 THAP1 YTGCCCDBANYMAAGATGGCG 1.1e0000 1.4e-003 -6.54 0.0 220 480 158 265 0.45833 6.0e-006 239 3 M4681_1.02 BACH2 TGCTGAGTCA 2.2e-011 3.0e-014 -31.15 0.0 287 491 378 497 0.58452 1.2e-016 245 3 M4692_1.02 SIX5 ACTACAAYTC 7.7e-006 1.0e-008 -18.38 0.0 85 491 141 477 0.17312 4.2e-011 245 3 M4698_1.02 HNF4A BTGRMCTTTGVHCYB 1.4e-008 1.9e-011 -24.69 0.0 204 486 324 562 0.41975 7.8e-014 242 3 M4708_1.02 TBP TATGCAAATA 1.3e0000 1.7e-003 -6.37 0.0 445 491 526 550 0.90631 7.0e-006 245 3 M4840_1.02 (FEZF1)_(Drosophila_melanogaster)_(DBD_0.91) AAAWGMGCAWC 9.0e0000 1.2e-002 -4.42 0.0 92 490 130 502 0.18776 5.0e-005 244 3 M5284_1.02 ALX3 BNTAATTRGY 1.3e-001 1.7e-004 -8.66 0.0 417 491 480 521 0.84929 7.1e-007 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 9.1e-279 1.2e-281 -646.83 0.0 48 488 402 533 0.09836 5.0e-284 243 3 M5291_1.02 ARX YTAATTNRATTAN 5.5e-320 7.3e-323 -741.74 0.0 50 488 429 521 0.10246 3.0e-325 243 3 M5294_1.02 BARHL2 NHTAAAYGNY 6.0e-048 8.1e-051 -115.34 0.0 51 491 193 557 0.10387 3.3e-053 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 2.2e-030 2.9e-033 -74.91 0.0 60 484 154 428 0.12397 1.2e-035 241 3 M5322_1.02 CPEB1 YTTTTATT 1.4e-050 1.8e-053 -121.42 0.0 63 493 218 552 0.12779 7.5e-056 246 3 M5335_1.02 CUX2 ATCGATAHNDTTATYGAT 9.2e-354 1.2e-356 -819.51 0.0 51 483 440 495 0.10559 5.1e-359 241 3 M5339_1.02 DLX1 NNTAATTRNN 2.1e-002 2.8e-005 -10.47 0.0 399 491 493 552 0.81263 1.2e-007 245 3 M5342_1.02 DLX4 NTAATTRN 9.3e0000 1.3e-002 -4.38 0.0 461 493 535 550 0.93509 5.1e-005 246 3 M5344_1.02 DLX6 NTAATTRB 2.2e0000 3.0e-003 -5.82 0.0 461 493 525 538 0.93509 1.2e-005 246 3 M5348_1.02 DRGX NTAATYHAATTAN 4.6e-214 6.2e-217 -497.84 0.0 46 488 348 528 0.09426 2.6e-219 243 3 M5377_1.02 ELF4 AACCCGGAAGTR 4.0e-001 5.3e-004 -7.53 0.0 345 489 325 402 0.70552 2.2e-006 244 3 M5388_1.02 EMX2 NYTAATTAVB 4.4e0000 5.9e-003 -5.14 0.0 461 491 499 510 0.93890 2.4e-005 245 3 M5414_1.02 ESX1 DNTAATTRRN 2.5e-001 3.4e-004 -7.98 0.0 417 491 495 539 0.84929 1.4e-006 245 3 M5425_1.02 ETV6 CCGGAASCGGAAGYR 3.2e-005 4.3e-008 -16.95 0.0 274 486 270 373 0.56379 1.8e-010 242 3 M5435_1.02 FOXB1 TCGCYGTGTCATTC 1.4e-003 1.9e-006 -13.19 0.0 125 487 161 421 0.25667 7.7e-009 243 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 4.3e-026 5.7e-029 -65.03 0.0 53 487 153 513 0.10883 2.4e-031 243 3 M5446_1.02 FOXD4L2 RTAAACA 1.3e-167 1.7e-170 -390.92 0.0 46 494 321 573 0.09312 6.9e-173 246 3 M5460_1.02 FOXL1 RTAAACA 6.1e-224 8.2e-227 -520.58 0.0 54 494 384 558 0.10931 3.4e-229 246 3 M5481_1.02 GBX2 NYTAATTRSB 7.1e0000 9.5e-003 -4.66 0.0 397 491 462 528 0.80855 3.9e-005 245 3 M5493_1.02 GMEB2 KTRCGTAA 5.5e-002 7.4e-005 -9.51 0.0 373 493 314 364 0.75659 3.0e-007 246 3 M5501_1.02 GSC2 NYTAATCCBH 6.7e0000 9.1e-003 -4.70 0.0 325 491 405 547 0.66191 3.7e-005 245 3 M5502_1.02 GSX1 NBTAATKRSN 4.3e0000 5.7e-003 -5.16 0.0 461 491 524 536 0.93890 2.3e-005 245 3 M5503_1.02 GSX2 DYTAATKRVN 2.3e-001 3.2e-004 -8.06 0.0 461 491 541 551 0.93890 1.3e-006 245 3 M5504_1.02 HES5 YGGCACGTGYCR 7.3e0000 9.8e-003 -4.62 0.0 409 489 281 307 0.83640 4.1e-005 244 3 M5509_1.02 HEY1 GRCACGTGBC 1.3e-001 1.7e-004 -8.69 0.0 397 491 420 471 0.80855 6.9e-007 245 3 M5542_1.02 HOXB3 NYTAATKRNN 1.7e0000 2.3e-003 -6.09 0.0 417 491 488 535 0.84929 9.3e-006 245 3 M5544_1.02 HOXC10 DTTTWATKDB 1.8e-062 2.4e-065 -148.79 0.0 71 491 251 554 0.14460 9.8e-068 245 3 M5553_1.02 HOXC13 CYAATAAAAH 4.8e-006 6.5e-009 -18.85 0.0 71 491 138 546 0.14460 2.6e-011 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 1.9e-014 2.6e-017 -38.19 0.0 71 491 143 460 0.14460 1.1e-019 245 3 M5563_1.02 HOXD8 VHWAATTADV 5.3e-004 7.1e-007 -14.16 0.0 395 491 496 553 0.80448 2.9e-009 245 3 M5584_1.02 ISX YTAATCTAATTAR 3.1e-253 4.1e-256 -588.05 0.0 48 488 375 508 0.09836 1.7e-258 243 3 M5602_1.02 LHX9 YTAATTRN 1.0e0000 1.4e-003 -6.60 0.0 417 493 475 521 0.84584 5.5e-006 246 3 M5604_1.02 LMX1A YTAATTAA 1.1e-047 1.4e-050 -114.77 0.0 55 493 194 530 0.11156 5.8e-053 246 3 M5605_1.02 LMX1B TTAATTRN 4.0e-052 5.3e-055 -124.97 0.0 49 493 192 541 0.09939 2.2e-057 246 3 M5616_1.02 MEF2B RCTAWAAATAGM 4.3e-003 5.8e-006 -12.05 0.0 401 489 434 477 0.82004 2.4e-008 244 3 M5621_1.02 MEIS3 SCTGTCAH 2.1e-006 2.8e-009 -19.68 0.0 135 493 236 586 0.27383 1.2e-011 246 3 M5628_1.02 MGA AGGTGTGA 5.3e-002 7.1e-005 -9.55 0.0 357 493 470 577 0.72414 2.9e-007 246 3 M5631_1.02 MIXL1 NBTAATTRVN 5.1e-001 6.8e-004 -7.29 0.0 417 491 493 538 0.84929 2.8e-006 245 3 M5635_1.02 MNX1 TTTAATTRNH 6.6e-045 8.9e-048 -108.34 0.0 47 491 178 545 0.09572 3.6e-050 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 2.0e-089 2.6e-092 -210.87 0.0 55 483 247 514 0.11387 1.1e-094 241 3 M5660_1.02 NFIA TTGGCANNDTGCCAR 4.2e-002 5.6e-005 -9.79 0.0 226 486 183 299 0.46502 2.3e-007 242 3 M5662_1.02 NFIB TTGGCAHNDTGCCAR 4.3e-001 5.7e-004 -7.47 0.0 226 486 184 309 0.46502 2.4e-006 242 3 M5697_1.02 ONECUT3 DTTATYGATTTTTY 2.0e-304 2.6e-307 -705.92 0.0 57 487 434 521 0.11704 1.1e-309 243 3 M5702_1.02 PAX1 DKCABTCAWGCGTGACG 1.3e-001 1.7e-004 -8.66 0.0 348 484 233 276 0.71901 7.2e-007 241 3 M5704_1.02 PAX3 TAATYRATTA 3.5e0000 4.6e-003 -5.37 0.0 47 491 47 261 0.09572 1.9e-005 245 3 M5705_1.02 PAX4 YTAATTAG 9.8e0000 1.3e-002 -4.33 0.0 415 493 457 506 0.84178 5.4e-005 246 3 M5711_1.02 PAX9 KKCASTCAWGCGTGACS 1.4e-008 1.8e-011 -24.72 0.0 180 484 148 243 0.37190 7.7e-014 241 3 M5714_1.02 PHOX2A TAATYYAATTA 1.9e-174 2.5e-177 -406.64 0.0 48 490 318 525 0.09796 1.0e-179 244 3 M5715_1.02 PHOX2B TAATYYAATTA 2.9e-169 4.0e-172 -394.67 0.0 46 490 309 526 0.09388 1.6e-174 244 3 M5735_1.02 POU3F3 WAATTWGCATAWW 3.0e-001 4.1e-004 -7.81 0.0 68 488 103 471 0.13934 1.7e-006 243 3 M5740_1.02 POU4F1 ATGMATAATTAATG 3.6e-319 4.8e-322 -739.87 0.0 49 487 427 523 0.10062 2.0e-324 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 3.5e-311 4.7e-314 -721.45 0.0 51 485 427 523 0.10515 2.0e-316 242 3 M5753_1.02 PROX1 YAAGACGYCTTA 1.0e-026 1.4e-029 -66.44 0.0 95 489 142 279 0.19427 5.7e-032 244 3 M5771_1.02 RAX DYTAATTRRY 5.1e-001 6.9e-004 -7.29 0.0 397 491 482 546 0.80855 2.8e-006 245 3 M5772_1.02 RAX2 BTAATTRR 1.5e-001 2.0e-004 -8.51 0.0 411 493 485 535 0.83367 8.2e-007 246 3 M5777_1.02 RFX4 NGTWRCCATGGYWACS 1.4e-007 1.9e-010 -22.38 0.0 319 485 351 432 0.65773 7.9e-013 242 3 M5807_1.02 SHOX2 YTAATTRR 1.9e-001 2.6e-004 -8.25 0.0 417 493 485 529 0.84584 1.1e-006 246 3 M5856_1.02 SP8 RGKGGGCGTGKY 6.1e0000 8.2e-003 -4.80 0.0 369 489 470 570 0.75460 3.4e-005 244 3 M5883_1.02 TBX20 TCACACSTTCACACCT 5.7e0000 7.7e-003 -4.87 0.0 219 485 211 380 0.45155 3.2e-005 242 3 M5896_1.02 TBX4 AGGTGTGA 1.4e-001 1.9e-004 -8.57 0.0 363 493 476 579 0.73631 7.7e-007 246 3 M5941_1.02 UNCX NTAATYBAATTAN 7.4e-138 9.9e-141 -322.37 0.0 50 488 292 531 0.10246 4.1e-143 243 3 M5949_1.02 VSX1 YTAATTAN 2.8e0000 3.7e-003 -5.60 0.0 417 493 466 512 0.84584 1.5e-005 246 3 M5962_1.02 ZBTB7C NTYGGTGGTCGY 1.3e0000 1.7e-003 -6.36 0.0 419 489 528 576 0.85685 7.1e-006 244 3 M5972_1.02 ZNF410 GANTATTATGGGATGKM 4.5e-004 6.0e-007 -14.33 0.0 76 484 48 129 0.15702 2.5e-009 241 3 M5974_1.02 ZNF524 GGGTTCRAGGGT 5.7e-006 7.6e-009 -18.69 0.0 263 489 324 471 0.53783 3.1e-011 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 1.3e-216 1.7e-219 -503.74 0.0 57 491 385 558 0.11609 6.9e-222 245 3 M6115_1.02 TP73 CATGYCWGRRCHTGY 1.2e-005 1.7e-008 -17.91 0.0 274 486 397 571 0.56379 6.9e-011 242 3 M6123_1.02 (ZNF281)_(Mus_musculus)_(DBD_1.00) GRGKTGGGGGAGGGG 3.7e-004 4.9e-007 -14.52 0.0 340 486 441 544 0.69959 2.0e-009 242 3 M6139_1.02 AHR KCACGCRAH 2.7e-007 3.6e-010 -21.74 0.0 366 492 483 558 0.74390 1.5e-012 245 3 M6141_1.02 ALX1 TAATBYAATTAB 1.2e-079 1.6e-082 -188.37 0.0 47 489 222 528 0.09611 6.4e-085 244 3 M6144_1.02 TFAP2B BCCCBCRGGC 4.4e-007 5.9e-010 -21.25 0.0 291 491 424 580 0.59267 2.4e-012 245 3 M6146_1.02 TFAP2D ACGNGCCBCRGGCK 5.6e-013 7.6e-016 -34.82 0.0 277 487 388 515 0.56879 3.1e-018 243 3 M6147_1.02 ARID3A TWWAWTTTGATWYYVWTTAATH 4.9e-311 6.6e-314 -721.12 0.0 51 479 428 521 0.10647 2.8e-316 239 3 M6149_1.02 ARID5B DBYKDGTATTSKR 9.5e0000 1.3e-002 -4.36 0.0 460 488 558 571 0.94262 5.3e-005 243 3 M6150_1.02 ARNT2 GYSYSCCACGNC 3.5e-003 4.7e-006 -12.28 0.0 355 489 482 585 0.72597 1.9e-008 244 3 M6157_1.02 BARX2 TYRWTAATKR 1.5e-006 2.0e-009 -20.02 0.0 59 491 121 539 0.12016 8.2e-012 245 3 M6187_1.02 DDIT3 GGGGATTGCABBB 1.1e-016 1.4e-019 -43.39 0.0 228 488 383 575 0.46721 5.9e-022 243 3 M6189_1.02 DLX3 GMTAATTRSW 3.5e0000 4.6e-003 -5.37 0.0 403 491 469 529 0.82077 1.9e-005 245 3 M6199_1.02 EGR2 DGVGTGGGCGG 5.9e0000 7.9e-003 -4.84 0.0 342 490 414 533 0.69796 3.3e-005 244 3 M6201_1.02 EGR4 GGSGGYRGGGM 2.5e-004 3.4e-007 -14.89 0.0 346 490 444 543 0.70612 1.4e-009 244 3 M6211_1.02 EOMES CGGGGATACGAAAT 1.0e-002 1.4e-005 -11.21 0.0 183 487 103 179 0.37577 5.6e-008 243 3 M6221_1.02 ETS2 VMVGGAAGTKS 8.6e-012 1.2e-014 -32.10 0.0 298 490 456 593 0.60816 4.7e-017 244 3 M6228_1.02 FOSB CTGACTCAYV 3.3e0000 4.4e-003 -5.42 0.0 287 491 374 558 0.58452 1.8e-005 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 4.4e-259 5.9e-262 -601.51 0.0 58 488 421 558 0.11885 2.4e-264 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 3.7e-138 4.9e-141 -323.07 0.0 56 486 306 533 0.11523 2.0e-143 242 3 M6236_1.02 FOXC2 YCTRDSWAAACAAAC 9.3e-005 1.3e-007 -15.89 0.0 428 486 509 531 0.88066 5.2e-010 242 3 M6237_1.02 FOXD3 AAACAAACA 8.4e-205 1.1e-207 -476.52 0.0 52 492 363 556 0.10569 4.6e-210 245 3 M6238_1.02 FOXF1 WAAATAAACAW 1.5e-273 2.0e-276 -634.83 0.0 62 490 432 541 0.12653 8.1e-279 244 3 M6239_1.02 FOXF2 HWADGTAAACA 5.5e-209 7.3e-212 -486.16 0.0 64 490 393 553 0.13061 3.0e-214 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 1.3e-325 1.7e-328 -754.72 0.0 49 491 444 554 0.09980 6.9e-331 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 5.8e-158 7.7e-161 -368.67 0.0 56 488 326 538 0.11475 3.2e-163 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 4.5e-181 6.1e-184 -421.87 0.0 56 488 358 572 0.11475 2.5e-186 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 3.2e-206 4.3e-209 -479.77 0.0 51 485 365 559 0.10515 1.8e-211 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 4.4e-204 6.0e-207 -474.85 0.0 48 488 357 567 0.09836 2.5e-209 243 3 M6247_1.02 FOXO4 MRTAAACAA 1.6e-087 2.2e-090 -206.45 0.0 52 492 251 568 0.10569 8.9e-093 245 3 M6249_1.02 FOXP3 AAWCAMATT 1.3e0000 1.7e-003 -6.36 0.0 62 492 106 552 0.12602 7.1e-006 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 1.3e-173 1.8e-176 -404.67 0.0 59 489 343 527 0.12065 7.4e-179 244 3 M6257_1.02 GATA5 WVANWGATAABTYRRHK 5.0e-006 6.7e-009 -18.82 0.0 62 484 124 533 0.12810 2.8e-011 241 3 M6262_1.02 GFI1B WGCMGTGATTT 2.8e-002 3.7e-005 -10.20 0.0 310 490 405 550 0.63265 1.5e-007 244 3 M6263_1.02 GFI1 RCWSTGATTT 1.4e0000 1.9e-003 -6.28 0.0 311 491 410 569 0.63340 7.7e-006 245 3 M6269_1.02 HBP1 AYYCATTGA 1.5e-019 2.0e-022 -49.95 0.0 46 492 134 552 0.09350 8.3e-025 245 3 M6271_1.02 HES1 KGKCKCGTGBCKB 2.4e0000 3.2e-003 -5.73 0.0 344 488 449 573 0.70492 1.3e-005 243 3 M6273_1.02 HEY2 GBBGGCWCGTGGCHTBV 9.2e-001 1.2e-003 -6.69 0.0 356 484 427 521 0.73554 5.2e-006 241 3 M6276_1.02 HINFP DMSHHMGCGGACGTTV 1.4e-010 1.8e-013 -29.32 0.0 231 485 251 367 0.47629 7.6e-016 242 3 M6279_1.02 HMGA1 AAAATWN 1.7e-003 2.2e-006 -13.02 0.0 434 494 535 564 0.87854 9.0e-009 246 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 1.2e-017 1.6e-020 -45.55 0.0 48 486 130 524 0.09877 6.8e-023 242 3 M6282_1.02 HNF1B GTTAAWYATTAACY 2.6e-026 3.5e-029 -65.53 0.0 47 487 146 529 0.09651 1.4e-031 243 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 2.1e-277 2.8e-280 -643.68 0.0 59 487 426 532 0.12115 1.2e-282 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 7.4e-082 1.0e-084 -193.42 0.0 53 489 240 543 0.10838 4.1e-087 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 1.3e-004 1.8e-007 -15.54 0.0 56 490 109 530 0.11429 7.3e-010 244 3 M6292_1.02 HOXA5 CATTAATYAR 2.1e-015 2.8e-018 -40.43 0.0 51 491 130 531 0.10387 1.1e-020 245 3 M6293_1.02 HOXA7 KCCAATCKATYGAKB 7.7e-003 1.0e-005 -11.48 0.0 270 486 364 544 0.55556 4.3e-008 242 3 M6296_1.02 HOXB6 KKCATMAATCAWT 8.8e-021 1.2e-023 -52.79 0.0 68 488 127 346 0.13934 4.9e-026 243 3 M6297_1.02 HOXB7 MATYAATCAA 7.6e-220 1.0e-222 -511.15 0.0 49 491 360 532 0.09980 4.2e-225 245 3 M6298_1.02 HOXB8 BMATTAATCAA 2.7e-180 3.6e-183 -420.08 0.0 58 490 345 523 0.11837 1.5e-185 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 2.8e-324 3.8e-327 -751.61 0.0 56 486 440 511 0.11523 1.6e-329 242 3 M6301_1.02 HOXD10 AATTAAARCA 2.1e-039 2.9e-042 -95.66 0.0 93 491 250 556 0.18941 1.2e-044 245 3 M6302_1.02 HOXD13 TCYCTAATAAA 1.1e0000 1.5e-003 -6.48 0.0 434 490 532 566 0.88571 6.3e-006 244 3 M6304_1.02 HOXD9 HMATNAAWYT 1.4e-019 1.9e-022 -50.02 0.0 69 491 166 524 0.14053 7.8e-025 245 3 M6312_1.02 IRF7 GAAASYGAAA 2.6e-007 3.4e-010 -21.79 0.0 83 491 166 580 0.16904 1.4e-012 245 3 M6314_1.02 IRF9 GAAAGCGAAAYT 3.3e-001 4.4e-004 -7.73 0.0 107 489 124 383 0.21881 1.8e-006 244 3 M6321_1.02 KLF15 RSMKGGGAGDKGGGGSS 1.3e-002 1.8e-005 -10.95 0.0 350 484 467 570 0.72314 7.3e-008 241 3 M6322_1.02 KLF1 CAGGGTGKGGC 3.8e0000 5.2e-003 -5.27 0.0 356 490 459 573 0.72653 2.1e-005 244 3 M6325_1.02 KLF6 GGGGGCKG 1.7e-001 2.3e-004 -8.37 0.0 339 493 449 577 0.68763 9.5e-007 246 3 M6328_1.02 LHX2 YRSDTKYAATWAG 4.2e0000 5.6e-003 -5.18 0.0 410 488 466 516 0.84016 2.3e-005 243 3 M6329_1.02 LHX3 AAAATTAATTARY 2.8e-185 3.8e-188 -431.56 0.0 60 488 351 517 0.12295 1.6e-190 243 3 M6330_1.02 MAFA BTGCTGACBMYGCARYHTYCV 3.4e-009 4.6e-012 -26.10 0.0 288 480 439 585 0.60000 1.9e-014 239 3 M6336_1.02 MAZ RGGGDRGGGAGGGRGGG 7.2e-006 9.7e-009 -18.46 0.0 346 484 480 577 0.71488 4.0e-011 241 3 M6339_1.02 MECP2 YYCCGGS 3.2e-003 4.3e-006 -12.36 0.0 252 494 362 579 0.51012 1.7e-008 246 3 M6342_1.02 MEF2D BCTAWAAATAGC 1.3e-002 1.7e-005 -10.96 0.0 61 489 111 536 0.12474 7.1e-008 244 3 M6348_1.02 MTF1 MGKGCCGTGTGCAAADS 1.8e-028 2.4e-031 -70.51 0.0 146 484 281 498 0.30165 9.9e-034 241 3 M6360_1.02 NFE2L2 VRTGACTCAGCA 3.5e-002 4.7e-005 -9.96 0.0 285 489 401 585 0.58282 1.9e-007 244 3 M6374_1.02 NKX2-1 STCAAGKGCH 2.7e-012 3.7e-015 -33.24 0.0 143 491 271 594 0.29124 1.5e-017 245 3 M6377_1.02 NKX2-8 TTCAAGKRC 6.5e0000 8.7e-003 -4.74 0.0 244 492 331 570 0.49593 3.6e-005 245 3 M6378_1.02 NKX3-1 WWTAAGTATWTWW 3.7e-332 5.0e-335 -769.76 0.0 50 488 440 530 0.10246 2.1e-337 243 3 M6379_1.02 NKX3-2 ARYTAAGTGGV 1.4e0000 1.9e-003 -6.27 0.0 156 490 235 582 0.31837 7.7e-006 244 3 M6381_1.02 NR0B1 YSTCCCMCKC 1.9e-003 2.5e-006 -12.89 0.0 219 491 328 583 0.44603 1.0e-008 245 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 4.7e-329 6.3e-332 -762.62 0.0 52 480 439 518 0.10833 2.6e-334 239 3 M6400_1.02 OTX1 BTAAKCCT 1.5e-001 2.1e-004 -8.49 0.0 319 493 418 563 0.64706 8.4e-007 246 3 M6401_1.02 OTX2 HYYTAATCCBWKHDM 1.0e-002 1.4e-005 -11.19 0.0 322 486 410 534 0.66255 5.7e-008 242 3 M6406_1.02 PAX2 RHTCAGTSAYGMGTGAYW 1.0e0000 1.4e-003 -6.57 0.0 353 483 447 550 0.73085 5.8e-006 241 3 M6410_1.02 PAX6 TSAWGCGTRAA 1.7e0000 2.3e-003 -6.08 0.0 280 490 364 550 0.57143 9.4e-006 244 3 M6411_1.02 PAX8 BTVAYTSRMGYRKR 2.1e-001 2.8e-004 -8.17 0.0 299 487 416 588 0.61396 1.2e-006 243 3 M6412_1.02 PBX1 VHMATCAATCAAWTH 1.6e-012 2.1e-015 -33.79 0.0 58 486 138 545 0.11934 8.7e-018 242 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 9.2e-132 1.2e-134 -308.33 0.0 56 486 309 565 0.11523 5.1e-137 242 3 M6417_1.02 POU1F1 RWATATTCATKAR 2.3e-108 3.1e-111 -254.47 0.0 44 488 253 551 0.09016 1.3e-113 243 3 M6418_1.02 PITX2 DBTAATCCMA 3.9e-006 5.3e-009 -19.06 0.0 339 491 467 574 0.69043 2.2e-011 245 3 M6426_1.02 POU3F2 CATRAATWWT 1.0e-244 1.4e-247 -568.41 0.0 53 491 394 548 0.10794 5.6e-250 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 9.3e0000 1.2e-002 -4.39 0.0 64 488 86 432 0.13115 5.2e-005 243 3 M6429_1.02 POU6F1 CATAAWTTATGCR 7.2e-002 9.7e-005 -9.24 0.0 396 488 352 389 0.81148 4.0e-007 243 3 M6432_1.02 PPARD TGACCTTTNNCCTR 5.5e0000 7.3e-003 -4.92 0.0 211 487 280 539 0.43326 3.0e-005 243 3 M6438_1.02 PROP1 RASHAATTAAHWTVR 1.3e-071 1.8e-074 -169.80 0.0 66 486 253 543 0.13580 7.4e-077 242 3 M6440_1.02 PRRX2 YTAATTR 9.0e-001 1.2e-003 -6.72 0.0 416 494 478 526 0.84211 4.9e-006 246 3 M6442_1.02 PURA CCMBGCCCNCCMMYWCC 4.5e-010 6.1e-013 -28.13 0.0 332 484 488 589 0.68595 2.5e-015 241 3 M6465_1.02 SMAD3 STGTCTGBCY 1.1e-005 1.5e-008 -18.00 0.0 123 491 218 587 0.25051 6.2e-011 245 3 M6471_1.02 SOX13 YATTGTTY 4.9e-008 6.6e-011 -23.45 0.0 55 493 123 562 0.11156 2.7e-013 246 3 M6475_1.02 SOX2 WTTTGCATRACAAWGG 4.5e0000 6.0e-003 -5.12 0.0 425 485 506 544 0.87629 2.5e-005 242 3 M6476_1.02 SOX4 GAGAACAAAGSG 2.7e-003 3.7e-006 -12.51 0.0 167 489 240 521 0.34151 1.5e-008 244 3 M6482_1.02 SP3 VGVVGGGGGCGGGGCBRGSS 2.1e-003 2.8e-006 -12.77 0.0 349 481 466 563 0.72557 1.2e-008 240 3 M6483_1.02 SP4 GSGGCCRGGGGSGGGGSGGSSSSR 1.9e-001 2.5e-004 -8.30 0.0 337 477 358 444 0.70650 1.0e-006 238 3 M6503_1.02 TBX2 GKSRCDYYTCACACCTVTGWWKBCA 2.5e0000 3.4e-003 -5.68 0.0 332 476 377 481 0.69748 1.4e-005 237 3 M6505_1.02 TBX5 AGGTGTGA 8.3e-002 1.1e-004 -9.10 0.0 357 493 478 589 0.72414 4.5e-007 246 3 M6509_1.02 TEAD4 AAAAAYAKCYCT 1.8e-003 2.4e-006 -12.94 0.0 63 489 115 525 0.12883 9.8e-009 244 3 M6510_1.02 TEF TGTTTATRTAAMTK 1.2e-108 1.7e-111 -255.08 0.0 55 487 276 543 0.11294 6.8e-114 243 3 M6534_1.02 VSX2 WDAGCTAATTA 8.8e-002 1.2e-004 -9.04 0.0 406 490 432 475 0.82857 4.8e-007 244 3 M6535_1.02 WT1 GMGGGGGCGKGGG 1.6e-002 2.1e-005 -10.75 0.0 348 488 457 564 0.71311 8.8e-008 243 3 M6542_1.02 ZBTB6 VGRTGATRGAGCC 4.5e-004 6.0e-007 -14.32 0.0 208 488 299 541 0.42623 2.5e-009 243 3 M6546_1.02 ZFHX3 ATTAWTAATTA 5.8e-318 7.8e-321 -737.08 0.0 52 490 432 522 0.10612 3.2e-323 244 3 M6547_1.02 ZFX SVGSSSSSCAGGCCBVGSC 9.1e-003 1.2e-005 -11.31 0.0 350 482 470 571 0.72614 5.1e-008 240 3 M6552_1.02 ZNF148 KGVGKGGGGGAGGGG 7.6e-004 1.0e-006 -13.79 0.0 346 486 458 559 0.71193 4.2e-009 242 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).