Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
M0085_1.02 10 TTGCCTGAGG
M0104_1.02 11 ATATTAATTAA
M0105_1.02 9 TTTTAATTG
M0108_1.02 11 GATAATATTGA
M0177_1.02 10 ACCATATGTT
M0178_1.02 10 AACAGCTGTT
M0189_1.02 8 GCACGTGA
M0195_1.02 10 ACCATATGGT
M0196_1.02 10 GGCACGTGTA
M0198_1.02 10 AGCCCGTGCG
M0199_1.02 13 TAACGACACGTGC
M0211_1.02 8 GCACGTGT
M0212_1.02 10 GGCACGTGCC
M0214_1.02 9 AACATATGT
M0216_1.02 10 CGCAGCTGTG
M0217_1.02 10 ACCATATGGT
M0300_1.02 10 AATGACGTCA
M0305_1.02 9 GCCACGTGT
M0307_1.02 8 ATACGTTT
M0395_1.02 8 GTACTAAT
M0396_1.02 10 AACGGTAGCA
M0398_1.02 11 AGGAAGTGCAA
M0404_1.02 10 AAGGGGGGCA
M0405_1.02 10 TGGGCGTGGC
M0408_1.02 10 ATGTGCACAT
M0413_1.02 10 GTTGCGGGAT
M0415_1.02 8 ATAACGGT
M0422_1.02 10 CCGGGGGGTC
M0424_1.02 10 TTTGACAGCT
M0428_1.02 8 AGGAGCAC
M0431_1.02 9 ACGGTAGCA
M0432_1.02 9 CGCGCGCAC
M0433_1.02 10 ATCTAGAACA
M0436_1.02 10 TTGTTTATTG
M0437_1.02 9 TATATATAT
M0442_1.02 9 AATGCAGTG
M0443_1.02 10 TGGGCGTGGC
M0594_1.02 9 ATTTGAATT
M0603_1.02 7 TTAGCGG
M0607_1.02 9 TCGTAAATA
M0608_1.02 10 GGGGGCGTAA
M0609_1.02 10 TCCCGCTGCC
M0610_1.02 9 ATCGCGTTA
M0629_1.02 11 AATGTATCAAT
M0630_1.02 10 AATGTATCAA
M0632_1.02 10 AATGTATCAA
M0633_1.02 10 TAATGTATTA
M0635_1.02 13 AACATGTATAAAA
M0714_1.02 10 AACCGGAAGT
M0718_1.02 10 ATGTAAACAA
M0719_1.02 8 GTAAACAA
M0728_1.02 12 AATAAACAAACA
M0736_1.02 8 GTAAACAA
M0737_1.02 10 TATGTAAACA
M0747_1.02 10 AATGTAAACA
M0756_1.02 9 GTAAACAAA
M0887_1.02 9 CCTAATGAG
M0890_1.02 8 GTAATCAA
M0891_1.02 10 TTAATTGGTT
M0892_1.02 10 CCTAATTACC
M0893_1.02 10 ATTAATTAAT
M0894_1.02 8 TTAATTAG
M0896_1.02 8 TTAATTAG
M0897_1.02 10 TTTTATGGGC
M0898_1.02 8 TTACGTAA
M0900_1.02 8 TTAATTGG
M0901_1.02 8 CTTGTCAA
M0905_1.02 9 TTAATTACC
M0906_1.02 10 AATTAATTAG
M0931_1.02 9 TAATTAATT
M0937_1.02 7 TGATACC
M0942_1.02 8 TTGTAATT
M0943_1.02 8 GCTAATTA
M0949_1.02 7 TTAATGA
M0952_1.02 8 TGATACCC
M0958_1.02 7 CTAATTA
M0961_1.02 9 CTAATTGGT
M0969_1.02 9 CTAATCAGC
M0975_1.02 9 TAATTAATT
M0994_1.02 9 ATGATACCC
M0996_1.02 7 GAAATCA
M0999_1.02 9 ATTAATTAC
M1007_1.02 9 TTTATGACC
M1012_1.02 9 TTAATGACT
M1016_1.02 7 GTGATAC
M1018_1.02 7 TAATTAA
M1025_1.02 8 GCTAATTA
M1027_1.02 9 TTAATTACC
M1030_1.02 9 ACCACTTAA
M1034_1.02 7 GCAATTA
M1039_1.02 9 GCTAATTGG
M1049_1.02 10 ATGATACCCC
M1070_1.02 9 TTAATGACC
M1071_1.02 8 TTAATGAC
M1073_1.02 9 TTAATGACC
M1110_1.02 10 GGGCAATAGA
M1125_1.02 10 GCTAATTGGT
M1157_1.02 10 TTTTATGACC
M1163_1.02 9 ATTAATTAC
M1266_1.02 10 GACCGAAACC
M1281_1.02 9 CTTACGCAA
M1358_1.02 9 TAACCCTAG
M1359_1.02 10 TTTTGCGCCA
M1418_1.02 8 TGGTACCA
M1432_1.02 10 ATTGACCTCT
M1458_1.02 10 ATTGACCTCG
M1507_1.02 10 AATTTTGGCT
M1528_1.02 10 CCATGGCAAC
M1529_1.02 10 CCATAGCAAC
M1545_1.02 9 CGTACGTCA
M1581_1.02 10 TTTGCTGACT
M1582_1.02 11 ATATATAATAA
M1583_1.02 8 TTCATTGA
M1589_1.02 10 GCAGAACAAT
M1592_1.02 8 AAAACAAT
M1594_1.02 10 CATTGTTTTT
M1601_1.02 9 ATTGTTTTC
M1605_1.02 10 ATTCATCTTT
M1628_1.02 11 AGGTGTGAAGA
M1668_1.02 12 TCCAAACGAGAT
M1838_1.02 15 CATTGCCTCAGGGCA
M1841_1.02 15 GAACATTCTGTTCTT
M1863_1.02 8 GTAAACAT
M1868_1.02 14 ACAGATAAGAATCT
M1871_1.02 10 TGGGTGGGGC
M1882_1.02 21 AAAGTGAAAGTGAAAGTAAAA
M1884_1.02 15 AGCTAAAAATAGCAT
M1889_1.02 10 AAGCACATGG
M1890_1.02 18 AGAGTGCTGATTGGTCCA
M1906_1.02 11 GGGGGCGGGGC
M1915_1.02 20 GCAAGGCATTATGGGAAATC
M1917_1.02 11 GGTCACGTGGC
M1919_1.02 12 CAAGATGGCGGC
M1925_1.02 11 TATTGTGCAAT
M1926_1.02 9 CAGGTGAGG
M1927_1.02 8 GCCACGTG
M1928_1.02 11 GGGAATTTCCC
M1929_1.02 15 CATGTCTGGGCATGT
M1934_1.02 20 AGGTCAGGGTGACCTGGGCC
M1950_1.02 6 GTGGAT
M1955_1.02 11 TTTCCAGGAAA
M1963_1.02 14 GGGGCCGAGGCCTG
M1968_1.02 11 TCCCTGGGGAC
M1970_1.02 6 TGCCAA
M2065_1.02 15 AGGTCAGGGTGACCT
M2264_1.02 8 GCCATCTG
M2267_1.02 11 TTTTATGGCTT
M2268_1.02 11 TATTGCACAAT
M2270_1.02 11 TAATTTAATCA
M2273_1.02 11 GGGCGGGAAGG
M2275_1.02 13 GAACCAGGAAGTG
M2277_1.02 11 ACAGGAAGTGG
M2278_1.02 11 TGTGACTCATT
M2281_1.02 11 TCCAATCCACA
M2283_1.02 15 CAAAAGTAAACAAAG
M2286_1.02 15 TGGACTTTGGACTCT
M2287_1.02 13 GGCCATAAATCAC
M2289_1.02 13 AAGATGATGTCAT
M2292_1.02 11 GGTGACTCATC
M2296_1.02 15 CTGAGTCAGCAATTT
M2299_1.02 13 AGGGACAGCTGCA
M2301_1.02 15 AAATGGACCAATCAG
M2303_1.02 15 TGACCTCTGACCCCT
M2305_1.02 11 TGCGCAGGCGC
M2306_1.02 13 TTCATTTGCATAT
M2307_1.02 15 AGAAAGTGAAAGTGA
M2310_1.02 15 CAAACCACAAACCCC
M2313_1.02 10 CCATTGTTTT
M2314_1.02 15 GGGAGGGGGCGGGGC
M2319_1.02 14 TTCCTTTGATCTTT
M2321_1.02 20 AGACATGCCCAGACATGCCC
M2323_1.02 15 CAGATCTCGCGAGAG
M2385_1.02 11 AAGTAAACAAA
M2387_1.02 10 GTGGGGTGAT
M2388_1.02 10 ATGGGGTGAT
M2390_1.02 8 CAGGAAGG
M2391_1.02 10 GGGGCGGGGC
M2392_1.02 19 GTTGCCATGGCAACCGCGG
M4344_1.02 8 GGTTGCTA
M4427_1.02 21 GTGGCCACCAGGGGGCGCTGT
M4428_1.02 14 AGAACATTCTGTTC
M4438_1.02 15 AGGTCATGGTGACCT
M4444_1.02 14 AGGGGATTTCCCAG
M4451_1.02 11 GGTCACGTGAC
M4452_1.02 15 TCTCGATATGACTCA
M4453_1.02 15 AAGAGGAAGTGAAAC
M4454_1.02 15 AAATCTCGCGAGAAC
M4459_1.02 20 GTGCGGGGGCGGGGGGGGGG
M4461_1.02 21 GCCTTCTGGGAATTGTAGTTC
M4462_1.02 11 CACCGGAAGTG
M4463_1.02 18 AATGTGGAAATGAGTCAG
M4467_1.02 15 ATGCCAAAAATAGCA
M4469_1.02 14 TCCATGGTGCTGAA
M4471_1.02 15 GCAGCCAAGCGTGAC
M4473_1.02 15 GCCGGCCAATCAGAG
M4476_1.02 15 TCACCTGTTGCTAGG
M4477_1.02 19 CTATGGCCATATAAGGCAA
M4478_1.02 20 CAGGTGATTTCCGGGAAATG
M4479_1.02 11 GCAGCAGCTGT
M4481_1.02 15 GGTCACGTGGCCCGG
M4484_1.02 15 CTGGGAATTGTAGTC
M4509_1.02 17 ATTTGCATAACAAAGGA
M4511_1.02 8 TGACCTCT
M4522_1.02 10 CCGGAAGTGG
M4525_1.02 15 AGCCTCAGGGCATGG
M4526_1.02 15 GGGGGGTGACTCATC
M4527_1.02 21 GGACTACAACTCCCAGCAGGC
M4532_1.02 10 CCACGTGCTC
M4536_1.02 15 GGGGAGGGCGCGCGG
M4537_1.02 15 GGCGGGAAATTTGAA
M4543_1.02 11 GGAACCACGTG
M4545_1.02 15 AGAAAGTGAAAGTGA
M4551_1.02 17 TTCATACTGGAGAGAAA
M4553_1.02 10 GGTCACGTGC
M4565_1.02 14 CAGGATGAGTCACC
M4567_1.02 15 GCAAAGTAAACATAG
M4569_1.02 18 GTCCCGGGTTCGAATCCC
M4572_1.02 15 TGCTGACTCAGCAAA
M4600_1.02 11 GCAGATAAGGA
M4604_1.02 21 GGGGAGGAGGGAGGGGAGGAG
M4612_1.02 15 CCGCCAGGGGGCGCC
M4619_1.02 11 GGGTGACTCAT
M4623_1.02 15 CGGTGACTCATCCTT
M4629_1.02 17 CATGACTCAGCAATTTT
M4635_1.02 15 GAAAATGAAACTGAA
M4636_1.02 21 CTGCCCTCATCCAAGATGGCG
M4640_1.02 15 GGGCAGGGGTCTCGG
M4665_1.02 15 CAGATAAGAATCTGT
M4680_1.02 8 GTCACGTG
M4681_1.02 10 TGCTGAGTCA
M4692_1.02 10 ACTACAACTC
M4698_1.02 15 CTGGACTTTGGACTC
M4702_1.02 8 TGACCTTT
M4708_1.02 10 TATGCAAATA
M4840_1.02 11 AAATGAGCAAC
M4850_1.02 21 TGTTGTGTCCGTGCCATCTGG
M4930_1.02 11 AAATCGTGACT
M4971_1.02 10 GTAACAGCTG
M5116_1.02 9 ACCACCTGT
M5209_1.02 11 GTGGGCGTGGC
M5234_1.02 10 GGTCACGTAC
M5284_1.02 10 GCTAATTAGC
M5287_1.02 13 CTAATTAAATTAA
M5291_1.02 13 TTAATTTAATTAA
M5292_1.02 13 GGATGATGCAATA
M5293_1.02 14 CGATGACGTCATCG
M5294_1.02 10 GTTAAACGGT
M5300_1.02 17 TAATCGGTATTTAATTG
M5302_1.02 14 TGATGACGTCATCA
M5303_1.02 17 TGCTTTCTAGGAATTCA
M5304_1.02 10 ACCATATGGT
M5307_1.02 12 AAACATATGTTT
M5308_1.02 10 ACCATATGTT
M5310_1.02 8 TTAATTGG
M5320_1.02 15 CCCGCATACAACGAA
M5321_1.02 10 AACACGTGTT
M5322_1.02 8 TTTTTATT
M5323_1.02 14 TGATGACGTCATCG
M5325_1.02 14 TGATGACGTGGCAT
M5335_1.02 18 ATCGATAATTTTATCGAT
M5339_1.02 10 GATAATTAGG
M5342_1.02 8 GTAATTGG
M5343_1.02 8 ATAATTAC
M5344_1.02 8 GTAATTGG
M5345_1.02 10 GTTAATCCGC
M5346_1.02 10 GCTAATCCGT
M5348_1.02 13 CTAATCTAATTAA
M5349_1.02 13 CTAATTTAATCAA
M5363_1.02 12 TTTCCCGCCAAA
M5377_1.02 12 AACCCGGAAGTG
M5388_1.02 10 GCTAATTAGC
M5390_1.02 10 GCTAATTGGG
M5394_1.02 10 GTTAATTGGA
M5398_1.02 10 ACCGGAAGTG
M5414_1.02 10 GTTAATTGGT
M5420_1.02 10 ACCGGAAGTA
M5421_1.02 11 AACCGGAAATA
M5422_1.02 10 ACCGGAAGTG
M5425_1.02 15 CCGGAAGCGGAAGTG
M5427_1.02 10 GCTAATTACC
M5428_1.02 10 GCTAATTACC
M5430_1.02 10 AACACCTGTT
M5435_1.02 14 TCGCTGTGTCATTC
M5445_1.02 14 AGTAAATATTTTTT
M5446_1.02 7 GTAAACA
M5460_1.02 7 GTAAACA
M5471_1.02 14 GTAAACATGTTTAC
M5480_1.02 10 GCTAATTAGT
M5481_1.02 10 GCTAATTGGT
M5487_1.02 10 TATGCGGGTA
M5490_1.02 16 GCTTCGTGGGGGGTCT
M5491_1.02 14 CTTCGCGGGGGGTC
M5493_1.02 8 GTACGTAA
M5497_1.02 17 AACCGGTTTAACCGGTT
M5500_1.02 10 GCTAATCCCC
M5501_1.02 10 CCTAATCCGC
M5502_1.02 10 TTTAATTAGG
M5503_1.02 10 TTTAATTAGT
M5504_1.02 12 TGGCACGTGCCG
M5506_1.02 12 TGGCACGTGCCA
M5509_1.02 10 GGCACGTGTC
M5512_1.02 9 GGTGGGCAT
M5517_1.02 10 ACTAGTTAAC
M5518_1.02 11 TTTTAATTGCT
M5519_1.02 11 TTTTAATTGGT
M5520_1.02 11 TGTTAATTGCT
M5530_1.02 12 TATAATCGTTTT
M5541_1.02 10 GTTAATTACT
M5542_1.02 10 GCTAATTAGT
M5543_1.02 10 TTTAATTAGT
M5544_1.02 10 TTTTTATGGG
M5547_1.02 11 GGTCGTAAAAT
M5551_1.02 9 TTTTATTAC
M5553_1.02 10 CCAATAAAAA
M5555_1.02 10 GTCGTAAAAA
M5557_1.02 9 GTAATAAAA
M5563_1.02 10 GCTAATTAGC
M5567_1.02 13 GAACGTTCTAGAA
M5568_1.02 15 TTCGAAACGTTCGAA
M5571_1.02 10 GACAGGTGTA
M5581_1.02 12 CATGTCATGTAA
M5582_1.02 12 CATGTCATGTAA
M5583_1.02 8 TTAAGTGC
M5584_1.02 13 TTAATCTAATTAA
M5587_1.02 9 ATGACTCAT
M5591_1.02 18 CAAAAAGGGGCGTGGCAT
M5592_1.02 14 AAGGGGGCGTGGCC
M5593_1.02 11 GGGGGCGTGGC
M5594_1.02 13 CTCGACCTAATTA
M5602_1.02 8 TTAATTGG
M5604_1.02 8 TTAATTAA
M5605_1.02 8 TTAATTAA
M5616_1.02 12 GCTATAAATAGC
M5621_1.02 8 CCTGTCAA
M5623_1.02 10 GCTAATTAAC
M5624_1.02 10 AGTAATTAAC
M5627_1.02 10 CACAGGTGTT
M5628_1.02 8 AGGTGTGA
M5631_1.02 10 GTTAATTAGA
M5632_1.02 10 ATCACGTGAT
M5634_1.02 10 ACCACGTGCC
M5635_1.02 10 TTTAATTACT
M5636_1.02 10 AACAGCTGTT
M5637_1.02 18 TAATTGGTTTTTAATTGC
M5643_1.02 12 ACCGTTAAACGG
M5652_1.02 10 GCCATATGGT
M5653_1.02 10 GACATATGTT
M5660_1.02 15 TTGGCACGGTGCCAA
M5662_1.02 15 TTGGCACAGTGCCAG
M5664_1.02 15 TTGGCACCGTGCCAA
M5672_1.02 10 GCTAATTAGC
M5689_1.02 11 AATTTGCTGAC
M5690_1.02 10 AACATATGTT
M5691_1.02 10 ACCATATGTT
M5693_1.02 10 ACCATATGTT
M5697_1.02 14 ATTATTGATTTTTT
M5702_1.02 17 TGCAGTCATGCGTGACG
M5704_1.02 10 TAATCGATTA
M5705_1.02 8 CTAATTAG
M5709_1.02 10 TAATCGATTA
M5711_1.02 17 TGCAGTCATGCGTGACG
M5714_1.02 11 TAATTTAATTA
M5715_1.02 11 TAATTTAATTA
M5717_1.02 9 CTTAATCCC
M5720_1.02 9 CTTAATCCC
M5722_1.02 12 TGACACCTGTCA
M5729_1.02 9 ATTTGCATA
M5735_1.02 13 AAATTAGCATAAT
M5738_1.02 9 ATTTGCATA
M5740_1.02 14 ATGAATAATTAATG
M5743_1.02 16 ATGCATAATTAATGAG
M5744_1.02 9 ATTTGCATA
M5746_1.02 10 ATAATGAGCT
M5750_1.02 13 GGGGGCCTTGAAA
M5753_1.02 12 CAAGACGCCTTA
M5771_1.02 10 GTTAATTGGC
M5772_1.02 8 TTAATTGG
M5777_1.02 16 CGTTGCCATGGCAACG
M5782_1.02 9 GGATAATCC
M5804_1.02 15 GAGCAACAGGTGGTT
M5805_1.02 13 ATGCAACAGGTGG
M5807_1.02 8 TTAATTGG
M5815_1.02 12 ACAATAACATTG
M5825_1.02 15 AACACTACCATTGTT
M5835_1.02 16 AACAATGTTCATTGTT
M5838_1.02 16 AACAATGTGCAGTGTT
M5856_1.02 12 AGTGGGCGTGGC
M5857_1.02 11 ACCCGGATGTA
M5865_1.02 14 AAAAAGAGGAAGTA
M5873_1.02 10 AGGTGTGAAA
M5875_1.02 20 AGGTGTGAAAAAAGGTGTGA
M5880_1.02 19 AGGTGTGAAATTCACACCT
M5882_1.02 20 TTTCACACCTAGGTGTGAAA
M5883_1.02 16 TCACACCTTCACACCT
M5889_1.02 16 GGTGTGAATTCACACC
M5896_1.02 8 AGGTGTGA
M5903_1.02 12 AAAGATCAAAGG
M5932_1.02 10 GTCACGTGAT
M5934_1.02 12 TGACAGCTGTCA
M5935_1.02 12 TGACAGCTGTCA
M5941_1.02 13 CTAATTTAATTAG
M5944_1.02 8 CTAATTAC
M5945_1.02 8 CTAATTAC
M5949_1.02 8 CTAATTAT
M5955_1.02 11 TAATGGCGGAC
M5958_1.02 13 TATGTCGCGATAG
M5959_1.02 17 TTTCGCCTGGCACGTCA
M5962_1.02 12 TTCGGTGGTCGC
M5965_1.02 15 GCACAGCGGGGGGTC
M5967_1.02 19 ATGTTAAATGTAGATTAAG
M5970_1.02 17 GTCGTGTTGTGGGAAAG
M5971_1.02 14 TCGAGGCTAGACCA
M5972_1.02 17 GAGTATTATGGGATGGA
M5973_1.02 18 AGGTGTTCTGTTAACACT
M5974_1.02 12 GGGTTCGAGGGT
M5976_1.02 17 TTCGTGGCATTTTTCTA
M5977_1.02 10 GTGGGGGGGG
M5979_1.02 12 TGTGGGAAAAGC
M5980_1.02 10 AGGTAGGTAC
M5981_1.02 15 TTTTCAGTGTGTGCA
M5998_1.02 12 GGTGACGTCATT
M6037_1.02 12 TTTGTCATGTAG
M6111_1.02 13 AGAAAGGGTTAAT
M6114_1.02 10 AAAGCAAACA
M6115_1.02 15 CATGTCTGGGCATGT
M6119_1.02 15 AAAAAGAGGAAGTGG
M6123_1.02 15 GGGGTGGGGGAGGGG
M6131_1.02 21 CCGGTTCAAACCGGTTCTGGC
M6139_1.02 9 GCACGCAAC
M6140_1.02 18 ATTGGTTTTATTGGTTAA
M6141_1.02 12 TAATTCAATTAT
M6144_1.02 10 GCCCCCGGGC
M6146_1.02 14 ACGCGCCTCGGGCG
M6147_1.02 22 TTTAATTTGATTTCGATTAATT
M6149_1.02 13 TGTTAGTATTGTG
M6150_1.02 12 GCCTCCCACGCC
M6151_1.02 8 TCACGTGC
M6152_1.02 10 GTGACGTCAC
M6154_1.02 12 TAAGGAAGAAGG
M6155_1.02 12 GTGGTGACGTGG
M6157_1.02 10 TCATTAATTG
M6159_1.02 16 TTCCTAGAAAGCTTTT
M6161_1.02 20 ACCGGGTCACGTGCAGAAGG
M6162_1.02 14 GGGTCACGTGTCCA
M6163_1.02 12 TTTGTTGTTTTC
M6164_1.02 25 ACATAGTGACACCTAGGTGTGAAAT
M6166_1.02 15 ATTATGTTAAATCAC
M6167_1.02 8 ACATAAAT
M6171_1.02 11 AATTGTGCAAT
M6172_1.02 12 AAGATTGCGCAA
M6173_1.02 13 CAGATTGCAAAAT
M6174_1.02 11 AGCCAATCAGC
M6176_1.02 12 TGACCTTTGACC
M6180_1.02 9 GTGACGTCA
M6181_1.02 11 CACTGACGTCA
M6182_1.02 8 CTAATCCC
M6184_1.02 14 AGGGGGATCGATGG
M6185_1.02 7 CGTTGGC
M6186_1.02 11 TGTTACATAAC
M6187_1.02 13 GGGGATTGCATTT
M6188_1.02 8 ATAATTAT
M6189_1.02 10 GATAATTACA
M6191_1.02 10 GGCGCGAAAC
M6192_1.02 10 CGCGCGAAAC
M6194_1.02 10 CGCGCCAAAC
M6196_1.02 13 TAAGGCGCGAAAA
M6197_1.02 9 CGTGACGTC
M6199_1.02 11 GGCGTGGGCGG
M6200_1.02 11 AGAGTGGGTGT
M6201_1.02 11 GGCGGCAGGGC
M6204_1.02 15 TAGCAGGAAGTGAGT
M6205_1.02 14 GGCAAACAGGAAAT
M6206_1.02 11 ATAAGGAAGTA
M6207_1.02 9 ACCGGAAGT
M6208_1.02 12 CCCAGGAAGTGC
M6210_1.02 13 TGCCCACGTGGTG
M6211_1.02 14 CGGGGATACGAAAT
M6212_1.02 13 CCCACGTACGCAC
M6213_1.02 11 ACCGGAAATCC
M6215_1.02 9 TGACCTTGA
M6216_1.02 9 TGACCTTGA
M6221_1.02 11 GCGGGAAGTGG
M6222_1.02 8 CAGGAAGT
M6223_1.02 13 GACAGGAAGTAAC
M6224_1.02 17 GCCACAGGAAGTAACAC
M6225_1.02 16 AAGATAAGATAAGATA
M6226_1.02 10 CAGGAAATAA
M6228_1.02 10 CTGACTCATC
M6234_1.02 13 GCAAAGCAAACAA
M6235_1.02 15 CTTAAGTAAACAATG
M6236_1.02 15 TCTGGCAAAACAAAC
M6237_1.02 9 AAACAAACA
M6238_1.02 11 AAAATAAACAT
M6239_1.02 11 AAAAGTAAACA
M6240_1.02 12 AACCAATCAGAG
M6241_1.02 10 TAAATAAACA
M6242_1.02 13 TAAACAAAAACAA
M6244_1.02 13 AAAAACAAACAAC
M6245_1.02 16 AAAAAGTAAACAAACC
M6246_1.02 13 AGGTAAACAAACA
M6247_1.02 9 AATAAACAA
M6249_1.02 9 AAACAAATT
M6250_1.02 12 AAATAAACAATT
M6251_1.02 12 TTGTGTTTTTTT
M6256_1.02 9 ACAGATAAC
M6257_1.02 17 TAAGAGATAACTTAGAT
M6258_1.02 7 AAGATAA
M6259_1.02 14 CACATGCGGGTATT
M6262_1.02 11 TGCAGTGATTT
M6263_1.02 10 GCTGTGATTT
M6264_1.02 11 CTGGGTGGTCT
M6265_1.02 11 GTGGGTGGTCT
M6266_1.02 11 TTGGGTGGTCC
M6267_1.02 10 GTGGGGGGTA
M6268_1.02 12 AATGCCAGACGC
M6269_1.02 9 ATTCATTGA
M6270_1.02 20 AGGGACGCAGCTGCTCCCCA
M6271_1.02 13 GGGCTCGTGGCGG
M6272_1.02 16 AGGCCACGTGCCGGAT
M6273_1.02 17 GGGGGCACGTGGCATTA
M6274_1.02 9 GGGTTGCCC
M6275_1.02 12 GCGTACGTGCGG
M6276_1.02 16 GCGCTAGCGGACGTTA
M6277_1.02 13 CTGTTACATAATC
M6278_1.02 12 TAGGGCTGCAAA
M6279_1.02 7 AAAATAC
M6280_1.02 15 AATAATCGCGAATAT
M6281_1.02 15 GGTTAATTATTAACC
M6282_1.02 14 GTTAATCATTAACC
M6285_1.02 14 TTTATTGATTTTTT
M6287_1.02 14 AGAATGTTCTAGAA
M6289_1.02 12 TCATAAATTATC
M6290_1.02 11 CCAATAAAACC
M6291_1.02 10 CATCCATCAA
M6292_1.02 10 CATTAATCAA
M6293_1.02 15 TCCAATCTATTGATT
M6295_1.02 10 CCATCCATCA
M6296_1.02 13 TGCATCAATCATT
M6297_1.02 10 CATTAATCAA
M6298_1.02 11 GCATTAATCAA
M6299_1.02 15 AAAGTAATAAATCAT
M6300_1.02 14 GGGCATCAATCAAA
M6301_1.02 10 AATTAAAGCA
M6302_1.02 11 TCCCTAATAAA
M6303_1.02 8 TTAATTGA
M6304_1.02 10 TAATTAAATT
M6306_1.02 12 TGTCAGGGGGCA
M6308_1.02 14 GGAAAGTGAAAGCA
M6309_1.02 17 GGAAAGCGAAACTGAAA
M6311_1.02 20 TAAAGGAAAGCCAAAAGTGA
M6312_1.02 10 GAAAGTGAAA
M6313_1.02 15 GAGAAAGTGAAACTG
M6314_1.02 12 GAAAGCGAAACT
M6315_1.02 7 GTTAATG
M6316_1.02 9 CCAGGTGCA
M6321_1.02 17 GGCGGGGAGGTGGGGGC
M6322_1.02 11 CAGGGTGTGGC
M6323_1.02 15 TGCCTGGGTGTGGCT
M6324_1.02 10 TGGGTGGGGC
M6325_1.02 8 GGGGGCGG
M6326_1.02 9 CAGGGGGTG
M6327_1.02 7 CTTTGAT
M6328_1.02 13 CACTTTTAATTAG
M6329_1.02 13 AAAATTAATTAAT
M6330_1.02 21 GTGCTGACCCCGCAGCCTTCG
M6331_1.02 9 TGCTGACGG
M6332_1.02 8 TTGCTGAC
M6333_1.02 7 CATGACT
M6336_1.02 17 GGGGGGGGGAGGGAGGG
M6337_1.02 11 GGGGCCGGAGG
M6338_1.02 17 TACAACAACCTGTTCTT
M6339_1.02 7 CTCCGGG
M6342_1.02 12 GCTAAAAATAGC
M6343_1.02 13 CATAAAACTGTCA
M6344_1.02 13 TGACAGCTGTCAA
M6345_1.02 10 ATCACATGAC
M6346_1.02 19 CCACGGCGGTGTCACATGC
M6347_1.02 7 TAATTGT
M6348_1.02 17 AGTGCCGTGTGCAAAAC
M6349_1.02 10 TCAACCTGCA
M6350_1.02 7 CAGTTGG
M6352_1.02 8 CCACGTGG
M6353_1.02 7 GCAGCTG
M6354_1.02 9 GACAGCTGC
M6355_1.02 13 TGACAGCTGCTGC
M6356_1.02 9 GGTGGGGAA
M6357_1.02 8 TTTAATGG
M6358_1.02 12 CGGCAGATGGCC
M6359_1.02 7 AATGACT
M6360_1.02 12 CATGACTCAGCA
M6361_1.02 13 ATGGAAATTTCCA
M6363_1.02 9 AATTTTCCA
M6364_1.02 9 AGTTTTCCA
M6365_1.02 10 AAATTTTCCT
M6366_1.02 15 CATGGATTTTTCCAC
M6368_1.02 14 ATGCATTACATAAC
M6370_1.02 11 GGAATCTCCCT
M6373_1.02 14 CAGCCAATCAGCGC
M6374_1.02 10 CTCAAGTGCT
M6375_1.02 12 AAACCACTTAAA
M6376_1.02 7 TCAAGTG
M6377_1.02 9 TTCAAGGAC
M6378_1.02 13 AATAAGTATATAA
M6379_1.02 11 AGTTAAGTGGA
M6380_1.02 9 TTAATTGGT
M6381_1.02 10 TCTCCCACGC
M6382_1.02 14 TTTGACCTACTTTT
M6383_1.02 19 CGTTGACCTTTGACCTTTA
M6384_1.02 14 AGGTCATTGACCCT
M6385_1.02 19 CTGAACTTTTTTGACCTCA
M6387_1.02 18 CTGAACTTTCCTGACCCC
M6389_1.02 13 CTGACCTCTGGCC
M6391_1.02 14 TGACTTTTGACTTT
M6392_1.02 18 TCAATTGAACTTTGTCCT
M6393_1.02 9 GTGACCTTT
M6394_1.02 9 GTGACCTTT
M6395_1.02 10 CTGACCTTTG
M6396_1.02 10 TGGCCTTGAA
M6397_1.02 13 TGACCTTGAACTT
M6399_1.02 21 GTCTTGTTATTGATTTTTTTT
M6400_1.02 8 CTAATCCT
M6401_1.02 15 CTTTAATCCCTTAAC
M6402_1.02 9 TGTAACTGT
M6406_1.02 18 GTTCAGTCATGCGTGACA
M6410_1.02 11 TCAAGCGTGAA
M6411_1.02 14 GTCACTGAAGCGGG
M6412_1.02 15 CCCATCAATCAAATT
M6413_1.02 15 CCATCAATCAATTTA
M6415_1.02 9 CTAATTACC
M6416_1.02 11 TCTGTGGTTTG
M6417_1.02 13 ATATATTCATGAG
M6418_1.02 10 TTTAATCCCA
M6419_1.02 13 CATCAATCAAGCT
M6420_1.02 17 GGGGGCATCAGGAGGGG
M6422_1.02 10 CGGGGGGCCC
M6423_1.02 9 ATTTGCATA
M6425_1.02 14 TTTGCATTACAATG
M6426_1.02 10 CATAAATAAT
M6427_1.02 13 CAGCTCATTAATA
M6429_1.02 13 CATAATTTATGCA
M6430_1.02 7 TGACCTT
M6432_1.02 14 TGACCTTTGTCCTA
M6433_1.02 18 GTGACCTTTGACCTACTT
M6436_1.02 13 TACAGACTGTTCT
M6438_1.02 15 GAGTAATTAATATAA
M6439_1.02 7 TAATCTG
M6440_1.02 7 TTAATTG
M6441_1.02 21 GGACAGCTGTTCTGTTTCCTG
M6442_1.02 17 CCCTGCCCCCCCCTTCC
M6443_1.02 7 TGACCTC
M6445_1.02 11 GCCCTGACCTC
M6446_1.02 20 GTGACCTCTGGGTGACCCCC
M6448_1.02 12 GGGGGATTTCCC
M6449_1.02 12 TGGGGATTTCCC
M6451_1.02 12 GTTGCTAGGGAA
M6453_1.02 14 TTACCATGGCAACC
M6454_1.02 12 TGACCTAGTTTT
M6455_1.02 13 CTGACCTACTTTT
M6456_1.02 22 GGGGGGGGGGGTGGTTTGGGGT
M6457_1.02 10 TAACCACAAA
M6459_1.02 14 AACCACAAAACCCA
M6461_1.02 10 TGTGACCTCA
M6462_1.02 13 GTGACCTTTGACC
M6463_1.02 12 AGCCTGTCTGCC
M6464_1.02 11 GTGTCCGTCTG
M6465_1.02 10 GTGTCTGGCC
M6466_1.02 9 TGTCTGGCC
M6468_1.02 8 CCAGGTGG
M6469_1.02 7 TCAGGTG
M6470_1.02 7 TCTTTGT
M6471_1.02 8 CATTGTTC
M6472_1.02 7 CATTGTT
M6473_1.02 18 CAACAATCTTCATTGTCC
M6474_1.02 19 GGAAAAGAACAATGGGTTC
M6475_1.02 16 ATTTGCATAACAATGG
M6476_1.02 12 GAGAACAAAGCG
M6477_1.02 8 TAACAATA
M6478_1.02 11 AGAACAATGGG
M6482_1.02 20 GGGGGGGGGCGGGGCCGGGG
M6483_1.02 24 GGGGCCAGGGGGGGGGCGGGGCCG
M6485_1.02 12 AAAAAGAGGAAG
M6486_1.02 16 CGGCTGTTACCCTGGG
M6490_1.02 9 AAAACAAAA
M6491_1.02 12 TTTCCAGGAATT
M6492_1.02 13 TTTTCTAGGAATT
M6496_1.02 13 TTTCCCAGAAAAG
M6497_1.02 13 TTCCCAGGAATTT
M6498_1.02 9 TGACCTTGA
M6499_1.02 9 CGTGGGAAA
M6500_1.02 12 GACCATCTGTTC
M6503_1.02 25 GTCGCTTTTCACACCTCTGATGGCA
M6504_1.02 24 AGGTAGAGAATTAGGTGATAAAAA
M6505_1.02 8 AGGTGTGA
M6506_1.02 12 GCGCTTTGTTCT
M6507_1.02 14 CACATTCCTGCGCC
M6508_1.02 15 GATATTTCTGCTCTA
M6509_1.02 12 AAAAATAGCTCT
M6510_1.02 14 TGTTTATGTAAATG
M6513_1.02 11 GCCAGCTGCGG
M6514_1.02 16 GCCTGAACTGGCCAGA
M6515_1.02 14 AAATGGCGGGAAAC
M6516_1.02 11 GACCATCTGGT
M6517_1.02 10 GGTCATGTGG
M6518_1.02 9 GGTCACGTG
M6519_1.02 16 CAGGTGACACCTGACA
M6521_1.02 10 CTGACCTGAA
M6523_1.02 17 TGACCTGACCTGACCTC
M6525_1.02 11 CGCCAAGGAGC
M6527_1.02 10 ACCCAGGTGG
M6529_1.02 7 TTTCTGG
M6532_1.02 7 TGACCTC
M6534_1.02 11 TTAGCTAATTA
M6535_1.02 13 GCGGGGGCGGGGG
M6536_1.02 12 GACGTGTCATTA
M6537_1.02 11 GGGGATTGGCC
M6539_1.02 22 CGGAGAGGGGGAGGGGGGGGGC
M6540_1.02 15 CAATAGCGGTGGTGG
M6542_1.02 13 AGATGATAGAGCC
M6544_1.02 12 GGGGATTTCCCA
M6545_1.02 14 GGTAGGGAAACCCC
M6546_1.02 11 ATTAATAATTA
M6547_1.02 19 GAGGGCCCCAGGCCTCGGC
M6548_1.02 9 GGGGTGGTC
M6549_1.02 9 GGGGTGGTC
M6550_1.02 9 TGGGTGGTC
M6552_1.02 15 GGGGTGGGGGAGGGG
M6553_1.02 12 GAGGGGGGCGGA
M6554_1.02 14 TCCAGATGTTTCGG
M6555_1.02 9 CGATAATGA
M6556_1.02 24 GGGCAACAAATCCCTGCGCCCCGT
M6557_1.02 12 GGAAAAAATCGG
M6558_1.02 15 GCACCCTTGGGTGCC
M6559_1.02 16 CCCACGGTTACTGCCG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.271 C 0.229 G 0.229 T 0.271


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
M2273_1.02 E2F6 chr19 + 34964219 34964229 1.27e-07 0.0362 GGGCGGGAAGG
M2273_1.02 E2F6 chr19 + 36379312 36379322 1.27e-07 0.0362 GGGCGGGAAGG
M2273_1.02 E2F6 chr7 + 102286757 102286767 3.62e-07 0.0486 GGGCGGGAGGG
M2273_1.02 E2F6 chr5 - 171420184 171420194 3.62e-07 0.0486 GGGCGGGAGGG
M2273_1.02 E2F6 chr18 - 56651295 56651305 5.12e-07 0.0486 GGGCGGGAAAG
M2273_1.02 E2F6 chr2 - 112055644 112055654 5.12e-07 0.0486 GGGCGGGAAAG
M2273_1.02 E2F6 chr19 + 40218305 40218315 7.7e-07 0.0558 GGGCGGGAGGC
M2273_1.02 E2F6 chr10 - 32978476 32978486 9.21e-07 0.0558 GGGCGGGAAAC
M2273_1.02 E2F6 chr8 + 22693140 22693150 1.05e-06 0.0558 GGGCGGGAGAG
M2273_1.02 E2F6 chr10 - 129971762 129971772 1.05e-06 0.0558 GGGCGGGAGAG
M2273_1.02 E2F6 chr7 + 150367057 150367067 1.18e-06 0.0558 gggcgggagga
M2273_1.02 E2F6 chr5 - 171420467 171420477 1.18e-06 0.0558 GGGCGGGAGGA
M2273_1.02 E2F6 chr19 + 6280304 6280314 2.93e-06 0.116 GGGCGGGAGCG
M2273_1.02 E2F6 chr5 - 180072223 180072233 2.93e-06 0.116 GGGCGGGAGCG
M2273_1.02 E2F6 chr10 + 133520506 133520516 3.51e-06 0.116 AGGCGGGAGGC
M2273_1.02 E2F6 chr10 - 31092025 31092035 4.29e-06 0.116 AGGCGGGAGGA
M2273_1.02 E2F6 chr22 - 35526047 35526057 4.29e-06 0.116 AGGCGGGAGGA
M2273_1.02 E2F6 chr19 - 36379630 36379640 4.29e-06 0.116 AGGCGGGAGGA
M2273_1.02 E2F6 chr19 - 38066117 38066127 4.29e-06 0.116 AGGCGGGAGGA
M2273_1.02 E2F6 chr1 - 155065640 155065650 4.29e-06 0.116 AGGCGGGAGGA
M2273_1.02 E2F6 chr1 + 236315498 236315508 4.29e-06 0.116 aggcgggagga
M2273_1.02 E2F6 chr5 - 134851167 134851177 4.5e-06 0.117 AGGCGGGAAAA
M2273_1.02 E2F6 chr1 - 27603935 27603945 5.16e-06 0.118 GGGAGGGAGGG
M2273_1.02 E2F6 chr7 + 39833421 39833431 5.16e-06 0.118 GGGAGGGAGGG
M2273_1.02 E2F6 chr7 - 99580921 99580931 5.16e-06 0.118 GGGAGGGAGGG
M2273_1.02 E2F6 chr8 + 22693086 22693096 6.1e-06 0.129 gggagggaaga
M2273_1.02 E2F6 chr1 + 165445363 165445373 6.1e-06 0.129 AGGCGGGAGAC
M2273_1.02 E2F6 chr16 + 67555153 67555163 6.91e-06 0.13 aggcgggagaa
M2273_1.02 E2F6 chr10 + 98867963 98867973 6.91e-06 0.13 aggcgggagaa
M2273_1.02 E2F6 chr19 + 45681531 45681541 7.22e-06 0.13 GGGAGGGAGGC
M2273_1.02 E2F6 chr5 - 171420180 171420190 7.22e-06 0.13 GGGAGGGAGGC
M2273_1.02 E2F6 chr3 + 183162799 183162809 7.65e-06 0.13 GGGAGGGAAAC
M2273_1.02 E2F6 chr5 - 34182529 34182539 7.65e-06 0.13 TGGCGGGAGGC
M2273_1.02 E2F6 chr6 + 99613301 99613311 7.94e-06 0.13 GCGCGGGAGGG
M2273_1.02 E2F6 chr12 + 54549530 54549540 8.24e-06 0.13 GGGAGGGAGAG
M2273_1.02 E2F6 chr1 - 27603931 27603941 8.24e-06 0.13 GGGAGGGAGAG
M2273_1.02 E2F6 chr7 - 99580917 99580927 8.69e-06 0.134 GGGAGGGAGGA
M2273_1.02 E2F6 chr19 + 9914692 9914702 8.99e-06 0.135 GAGCGGGAAGC
M2273_1.02 E2F6 chrUn_KI270744v1 + 125080 125090 1.08e-05 0.156 aggagggaagg
M2273_1.02 E2F6 chr10 + 71396820 71396830 1.1e-05 0.156 AGGCGGGAGGT
M2273_1.02 E2F6 chr11 + 64028856 64028866 1.16e-05 0.161 GGGAGGGAGAC
M2273_1.02 E2F6 chr7 + 39833505 39833515 1.22e-05 0.163 GCGCGGGAGAG
M2273_1.02 E2F6 chr13 - 27953927 27953937 1.26e-05 0.163 GAGCGGGAGGC
M2273_1.02 E2F6 chrX - 123765181 123765191 1.26e-05 0.163 GCGCGGGAGGA
M2273_1.02 E2F6 chr12 + 124864100 124864110 1.4e-05 0.176 GGGCGGGAGCT
M2273_1.02 E2F6 chr21 - 40759796 40759806 1.42e-05 0.176 AGGAGGGAAGC
M2273_1.02 E2F6 chr1 - 27603953 27603963 1.48e-05 0.176 AGGAGGGAGGG
M2273_1.02 E2F6 chr7 - 99580925 99580935 1.48e-05 0.176 AGGAGGGAGGG
M2273_1.02 E2F6 chr6 + 92473007 92473017 1.6e-05 0.181 aagcgggaagg
M2273_1.02 E2F6 chr5 - 150450035 150450045 1.63e-05 0.181 GGGCGGGAGTC
M2273_1.02 E2F6 chr1 - 27604067 27604077 1.68e-05 0.181 GGGAGGGAGCG
M2273_1.02 E2F6 chr1 - 17227728 17227738 1.77e-05 0.181 GGGAGGGAACA
M2273_1.02 E2F6 chr19 - 31333224 31333234 1.77e-05 0.181 GGGAGGGAACA
M2273_1.02 E2F6 chr22 + 30803076 30803086 1.78e-05 0.181 cggcgggaagg
M2273_1.02 E2F6 chr10 + 35406307 35406317 1.82e-05 0.181 tggagggaagg
M2273_1.02 E2F6 chr20 - 18495514 18495524 1.82e-05 0.181 TGGAGGGAAGG
M2273_1.02 E2F6 chr12 + 43249457 43249467 1.93e-05 0.181 gggagggaggt
M2273_1.02 E2F6 chr1 + 211698743 211698753 1.93e-05 0.181 GGGAGGGAGGT
M2273_1.02 E2F6 chr9 - 136847604 136847614 1.98e-05 0.181 AGGAGGGAGAG
M2273_1.02 E2F6 chr1 - 211698672 211698682 1.98e-05 0.181 AGGAGGGAGAG
M2273_1.02 E2F6 chr22 - 36703392 36703402 2.03e-05 0.181 GGGAGGGAAAT
M2273_1.02 E2F6 chr19 + 35462097 35462107 2.05e-05 0.181 aggagggagga
M2273_1.02 E2F6 chr19 + 37087186 37087196 2.05e-05 0.181 aggagggagga
M2273_1.02 E2F6 chr19 - 32767054 32767064 2.05e-05 0.181 AGGAGGGAGGA
M2273_1.02 E2F6 chr9 - 998631 998641 2.13e-05 0.181 AGGAGGGAAAA
M2273_1.02 E2F6 chr9 - 998729 998739 2.13e-05 0.181 AGGAGGGAAAA
M2273_1.02 E2F6 chr16 + 12067188 12067198 2.16e-05 0.181 aaGCGGGAGGG
M2273_1.02 E2F6 chr9 - 136847583 136847593 2.16e-05 0.181 GGGTGGGAAGG
M2273_1.02 E2F6 chr13 + 41311271 41311281 2.27e-05 0.182 GCGCGGGAACC
M2273_1.02 E2F6 chr19 + 40218265 40218275 2.28e-05 0.182 tggcgggagcc
M2273_1.02 E2F6 chr19 + 29760328 29760338 2.3e-05 0.182 CGGCGGGAAGC
M2273_1.02 E2F6 chr19 + 35882339 35882349 2.34e-05 0.182 gggagggagca
M2273_1.02 E2F6 chr15 - 72118541 72118551 2.34e-05 0.182 GGGAGGGAGCA
M2273_1.02 E2F6 chr19 + 10103478 10103488 2.47e-05 0.187 acgcgggaggc
M2273_1.02 E2F6 chr10 + 71397202 71397212 2.57e-05 0.187 CGGCGGGAAGA
M2273_1.02 E2F6 chr1 + 38987569 38987579 2.63e-05 0.187 aggcgggagtg
M2273_1.02 E2F6 chr12 + 109187503 109187513 2.63e-05 0.187 aggcgggagtg
M2273_1.02 E2F6 chr1 + 231163208 231163218 2.63e-05 0.187 AGGCGGGAGTG
M2273_1.02 E2F6 chr19 - 45681458 45681468 2.63e-05 0.187 AGGCGGGAGTG
M2273_1.02 E2F6 chr7 - 152099517 152099527 2.63e-05 0.187 AGGCGGGAGTG
M2273_1.02 E2F6 chr7 - 99580933 99580943 2.67e-05 0.187 GAGAGGGAAGG
M2273_1.02 E2F6 chr20 + 41059183 41059193 2.86e-05 0.198 aggagggagaa
M2273_1.02 E2F6 chr12 + 43249453 43249463 2.92e-05 0.198 gggtgggaggg
M2273_1.02 E2F6 chr19 - 36379495 36379505 2.92e-05 0.198 GGGTGGGAGGG
M2273_1.02 E2F6 chr5 + 73216272 73216282 3.1e-05 0.207 GCGCGGGAGCC
M2273_1.02 E2F6 chr10 + 133520091 133520101 3.14e-05 0.208 tggagggaggC
M2273_1.02 E2F6 chr16 - 69407916 69407926 3.32e-05 0.212 TGGAGGGAGAG
M2273_1.02 E2F6 chr6 + 134673018 134673028 3.42e-05 0.212 acgcgggagac
M2273_1.02 E2F6 chr8 - 57206145 57206155 3.42e-05 0.212 ACGCGGGAGAC
M2273_1.02 E2F6 chr10 - 129971894 129971904 3.42e-05 0.212 CGGCGGGAGGA
M2273_1.02 E2F6 chr18 - 48717460 48717470 3.56e-05 0.212 GAGAGGGAGGG
M2273_1.02 E2F6 chr8 + 22693062 22693072 3.68e-05 0.212 GAGAGGGAAAG
M2273_1.02 E2F6 chr5 + 34182541 34182551 3.82e-05 0.212 GGGTGGGAAAC
M2273_1.02 E2F6 chr15 - 72118509 72118519 3.88e-05 0.212 GGGTGGGAGAG
M2273_1.02 E2F6 chr16 + 16069275 16069285 3.93e-05 0.212 gggtgggagga
M2273_1.02 E2F6 chr19 - 37865685 37865695 3.93e-05 0.212 GGGTGGGAGGA
M2273_1.02 E2F6 chr1 + 27603865 27603875 3.97e-05 0.212 GGGTGGGAAAA
M2273_1.02 E2F6 chr10 - 133111600 133111610 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr10 - 133111642 133111652 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr10 - 133111726 133111736 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr10 - 133111768 133111778 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr10 - 133111810 133111820 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr10 - 133111852 133111862 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr10 - 133111894 133111904 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr10 - 133111936 133111946 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr10 - 133111978 133111988 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr10 - 133112020 133112030 3.99e-05 0.212 AGGAGGGAGGT
M2273_1.02 E2F6 chr1 + 52879632 52879642 4.12e-05 0.212 AGGTGGGAAGG
M2273_1.02 E2F6 chr12 + 54549770 54549780 4.12e-05 0.212 AGGTGGGAAGG
M2273_1.02 E2F6 chr19 + 6280233 6280243 4.27e-05 0.212 GGGCGGGACGG
M2273_1.02 E2F6 chr6 - 163552949 163552959 4.29e-05 0.212 TGGCGGGAGTG
M2273_1.02 E2F6 chr9 + 34048630 34048640 4.37e-05 0.212 AGGAGGGAGCC
M2273_1.02 E2F6 chr9 + 34048801 34048811 4.64e-05 0.212 GAGAGGGAGAG
M2273_1.02 E2F6 chr10 + 71396833 71396843 4.64e-05 0.212 GGGAGGGAGCT
M2273_1.02 E2F6 chr1 + 156623268 156623278 4.64e-05 0.212 GAGAGGGAGAG
M2273_1.02 E2F6 chr6 - 21464984 21464994 4.64e-05 0.212 GAGAGGGAGAG
M2273_1.02 E2F6 chr6 - 21464990 21465000 4.64e-05 0.212 GAGAGGGAGAG
M2273_1.02 E2F6 chr9 - 33474535 33474545 4.72e-05 0.212 GAGAGGGAGGA
M2273_1.02 E2F6 chr10 - 129971864 129971874 4.72e-05 0.212 GAGAGGGAGGA
M2273_1.02 E2F6 chr9 - 136847622 136847632 4.72e-05 0.212 GAGAGGGAGGA
M2273_1.02 E2F6 chr5 + 171420078 171420088 4.74e-05 0.212 aggagggagca
M2273_1.02 E2F6 chr11 - 118578245 118578255 4.82e-05 0.212 GAGAGGGAAAA
M2273_1.02 E2F6 chr7 + 131110268 131110278 4.85e-05 0.212 CGGCGGGAAGT
M2273_1.02 E2F6 chr1 - 65002802 65002812 4.95e-05 0.212 GAGCGGGAACT
M2273_1.02 E2F6 chr19 - 45653619 45653629 4.96e-05 0.212 GGGTGGGAGAA
M2273_1.02 E2F6 chr19 + 45653531 45653541 5e-05 0.212 ACGCGGGAGGT
M2273_1.02 E2F6 chr9 + 34048791 34048801 5.02e-05 0.212 AAGAGGGAAGG
M2273_1.02 E2F6 chr10 - 133112062 133112072 5.06e-05 0.212 AGGAGGGAGAT
M2273_1.02 E2F6 chr4 + 141686340 141686350 5.19e-05 0.212 AGGTGGGAGGG
M2273_1.02 E2F6 chr6 - 30163143 30163153 5.19e-05 0.212 GGGCGGGACGC
M2273_1.02 E2F6 chrX - 154303317 154303327 5.19e-05 0.212 AGGTGGGAGGG
M2273_1.02 E2F6 chr6 - 92472995 92473005 5.3e-05 0.212 AGGTGGGAAAG
M2273_1.02 E2F6 chr1 + 28691947 28691957 5.38e-05 0.212 aggtgggaaga
M2273_1.02 E2F6 chr4 + 78704341 78704351 5.38e-05 0.212 aggtgggaaga
M2273_1.02 E2F6 chr19 - 52601164 52601174 5.44e-05 0.212 GGGCGGGACAG
M2273_1.02 E2F6 chr1 + 19187881 19187891 5.62e-05 0.212 gagagggagac
M2273_1.02 E2F6 chr5 - 72816593 72816603 5.65e-05 0.212 CGGCGGGAACA
M2273_1.02 E2F6 chr19 - 29760358 29760368 5.7e-05 0.212 CGGAGGGAAGG
M2273_1.02 E2F6 chr15 - 89042448 89042458 5.7e-05 0.212 CGGAGGGAAGG
M2273_1.02 E2F6 chr6 + 46834613 46834623 5.85e-05 0.212 GGGTGGGAACC
M2273_1.02 E2F6 chr1 + 236097053 236097063 6.34e-05 0.212 tggtgggaagg
M2273_1.02 E2F6 chr16 + 12067086 12067096 6.38e-05 0.212 aggtgggaggc
M2273_1.02 E2F6 chr22 + 36703265 36703275 6.38e-05 0.212 gggcgggcagg
M2273_1.02 E2F6 chr3 + 183162794 183162804 6.38e-05 0.212 GGGCGGGGAGG
M2273_1.02 E2F6 chr8 - 12665792 12665802 6.38e-05 0.212 GGGCGGGGAGG
M2273_1.02 E2F6 chr10 - 22719937 22719947 6.38e-05 0.212 AGGTGGGAGGC
M2273_1.02 E2F6 chr16 - 69565875 69565885 6.38e-05 0.212 GGGCGGGGAGG
M2273_1.02 E2F6 chr6 - 101393807 101393817 6.38e-05 0.212 GGGCGGGGAGG
M2273_1.02 E2F6 chr18 - 56651434 56651444 6.42e-05 0.212 GGGCGGCAAGC
M2273_1.02 E2F6 chr15 + 67254945 67254955 6.46e-05 0.212 AGGTGGGAAAC
M2273_1.02 E2F6 chr14 - 102623285 102623295 6.46e-05 0.212 AAGAGGGAAGA
M2273_1.02 E2F6 chr3 + 172039678 172039688 6.5e-05 0.212 gggcggcAGGG
M2273_1.02 E2F6 chr22 - 50030273 50030283 6.54e-05 0.212 CGGCGGGAGCC
M2273_1.02 E2F6 chr3 + 9939047 9939057 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr16 + 12066793 12066803 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr19 + 31333006 31333016 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr17 + 38923893 38923903 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr17 + 42789907 42789917 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr22 + 43019318 43019328 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr17 + 50795271 50795281 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chrX + 54428145 54428155 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr7 + 98598937 98598947 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr12 + 122427263 122427273 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr1 + 154015810 154015820 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr5 + 160243145 160243155 6.71e-05 0.212 aggtgggagga
M2273_1.02 E2F6 chr19 - 1771918 1771928 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr1 - 22980095 22980105 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr22 - 36088821 36088831 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr19 - 46808938 46808948 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr17 - 58673666 58673676 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr1 - 59992360 59992370 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr17 - 67440637 67440647 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr15 - 74162427 74162437 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr12 - 112328243 112328253 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr12 - 116145600 116145610 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr12 - 124657672 124657682 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr6 - 138177194 138177204 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr6 - 138403032 138403042 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr5 - 176320473 176320483 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr1 - 231284110 231284120 6.71e-05 0.212 AGGTGGGAGGA
M2273_1.02 E2F6 chr11 + 48021348 48021358 6.76e-05 0.213 gggcggcaaga
M2273_1.02 E2F6 chr1 - 223712496 223712506 6.8e-05 0.213 CGGAGGGAAGC
M2273_1.02 E2F6 chr3 + 193970451 193970461 6.84e-05 0.213 gggggggaggg
M2273_1.02 E2F6 chr3 + 172039660 172039670 6.96e-05 0.215 cggcgggagca
M2273_1.02 E2F6 chr1 - 27604071 27604081 7e-05 0.215 CGGAGGGAGGG
M2273_1.02 E2F6 chrX + 72210062 72210072 7.08e-05 0.217 gGGGGGGAAGA
M2273_1.02 E2F6 chr19 - 33821283 33821293 7.27e-05 0.22 GGGCTGGAAGG
M2273_1.02 E2F6 chr5 - 179678827 179678837 7.27e-05 0.22 GGGCTGGAAGG
M2273_1.02 E2F6 chr19 - 52601102 52601112 7.37e-05 0.221 GGCCGGGAAGG
M2273_1.02 E2F6 chr19 + 8308115 8308125 7.38e-05 0.221 GGGTGGGAGCC
M2273_1.02 E2F6 chr6 - 101393756 101393766 7.55e-05 0.225 GGGCGGAAAAG
M2273_1.02 E2F6 chr19 - 6292224 6292234 7.58e-05 0.225 CAGCGGGAAGG
M2273_1.02 E2F6 chr12 + 121177642 121177652 7.67e-05 0.225 TAGAGGGAAGG
M2273_1.02 E2F6 chr1 + 61810905 61810915 7.88e-05 0.225 aagagggaaac
M2273_1.02 E2F6 chr17 - 49136571 49136581 7.88e-05 0.225 AAGAGGGAAAC
M2273_1.02 E2F6 chr13 - 27953934 27953944 7.92e-05 0.225 GGGCGGGGAGC
M2273_1.02 E2F6 chr1 - 148409768 148409778 8.04e-05 0.225 AAGAGGGAGAG
M2273_1.02 E2F6 chr10 + 71396796 71396806 8.09e-05 0.225 GGGCGGGCGGG
M2273_1.02 E2F6 chr10 + 71396800 71396810 8.09e-05 0.225 GGGCGGGCGGG
M2273_1.02 E2F6 chr5 + 73215996 73216006 8.09e-05 0.225 GGGCGGGGGGG
M2273_1.02 E2F6 chr8 - 22693326 22693336 8.09e-05 0.225 GGGCGGGGGGG
M2273_1.02 E2F6 chr1 - 27604027 27604037 8.09e-05 0.225 GGGCGGGCGGG
M2273_1.02 E2F6 chr12 - 132829203 132829213 8.09e-05 0.225 GGGCGGGCGGG
M2273_1.02 E2F6 chr19 - 35509394 35509404 8.16e-05 0.225 TGGTGGGAAAG
M2273_1.02 E2F6 chr5 - 96818670 96818680 8.24e-05 0.225 AAGAGGGAGGA
M2273_1.02 E2F6 chr12 - 132829199 132829209 8.24e-05 0.225 GGGCGGGGAAG
M2273_1.02 E2F6 chr1 - 27604023 27604033 8.37e-05 0.225 GGGCGGGCAGA
M2273_1.02 E2F6 chr5 - 171420302 171420312 8.37e-05 0.225 GGGCGGGCAGA
M2273_1.02 E2F6 chr12 - 56266352 56266362 8.39e-05 0.225 GGGCAGGAAGC
M2273_1.02 E2F6 chr19 + 37918845 37918855 8.46e-05 0.225 gggcggcagag
M2273_1.02 E2F6 chr6 + 101393533 101393543 8.46e-05 0.225 GGGTGGGAGAT
M2273_1.02 E2F6 chr11 + 111767648 111767658 8.46e-05 0.225 gggcggcagag
M2273_1.02 E2F6 chr20 - 49100252 49100262 8.46e-05 0.225 GGGCGGCAGAG
M2273_1.02 E2F6 chr7 - 102286396 102286406 8.51e-05 0.225 TCGCGGGAGCC
M2273_1.02 E2F6 chr16 + 57323918 57323928 8.6e-05 0.225 aggtgggagaa
M2273_1.02 E2F6 chr1 + 226252184 226252194 8.6e-05 0.225 aggtgggagaa
M2273_1.02 E2F6 chr6 - 24760511 24760521 8.6e-05 0.225 AGGTGGGAGAA
M2273_1.02 E2F6 chr1 - 223186910 223186920 8.6e-05 0.225 AGGTGGGAGAA
M2273_1.02 E2F6 chrX + 119236161 119236171 8.7e-05 0.225 gggcgggaccg
M2273_1.02 E2F6 chr8 - 12665674 12665684 8.7e-05 0.225 GTGCGGGAGAG
M2273_1.02 E2F6 chr8 + 17616213 17616223 8.83e-05 0.225 gagagggagcc
M2273_1.02 E2F6 chr12 + 69284354 69284364 8.83e-05 0.225 GAGAGGGAGCC
M2273_1.02 E2F6 chr17 - 67377276 67377286 8.83e-05 0.225 GTGCGGGAGGA
M2273_1.02 E2F6 chr12 - 118372861 118372871 8.87e-05 0.225 CCGCGGGAGGG
M2273_1.02 E2F6 chr5 + 139517319 139517329 9.32e-05 0.234 GGGCTGGAGGG
M2273_1.02 E2F6 chr17 - 50795124 50795134 9.32e-05 0.234 GGGCTGGAGGG
M2273_1.02 E2F6 chr5 - 95961895 95961905 9.32e-05 0.234 GGGCCGGAGGG
M2273_1.02 E2F6 chr6 + 101393899 101393909 9.42e-05 0.235 GGACGGGAGGG
M2273_1.02 E2F6 chr15 - 89042523 89042533 9.46e-05 0.235 AGGTGGGAAGT
M2273_1.02 E2F6 chr22 + 30803189 30803199 9.72e-05 0.24 GGGCGGAAGAG
M2273_1.02 E2F6 chr22 - 30803270 30803280 9.78e-05 0.24 GGGCTGGAAGA
M2273_1.02 E2F6 chr16 - 69566262 69566272 9.78e-05 0.24 CAGCGGGAGGG
M2273_1.02 E2F6 chr19 + 43619649 43619659 9.97e-05 0.242 GGGCGTGAAGA
M2273_1.02 E2F6 chr18 + 56651613 56651623 9.97e-05 0.242 GGGCGGGATGT

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_44 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif M2273_1.02 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_44 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF560.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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