| Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme (DNA)
| MOTIF | WIDTH | BEST POSSIBLE MATCH |
|---|---|---|
| M0085_1.02 | 10 | TTGCCTGAGG |
| M0104_1.02 | 11 | ATATTAATTAA |
| M0105_1.02 | 9 | TTTTAATTG |
| M0108_1.02 | 11 | GATAATATTGA |
| M0177_1.02 | 10 | ACCATATGTT |
| M0178_1.02 | 10 | AACAGCTGTT |
| M0189_1.02 | 8 | GCACGTGA |
| M0195_1.02 | 10 | ACCATATGGT |
| M0196_1.02 | 10 | GGCACGTGTA |
| M0198_1.02 | 10 | AGCCCGTGCA |
| M0199_1.02 | 13 | TAACGACACGTGC |
| M0211_1.02 | 8 | GCACGTGT |
| M0212_1.02 | 10 | GGCACGTGCC |
| M0214_1.02 | 9 | AACATATGT |
| M0216_1.02 | 10 | CGCAGCTGTA |
| M0217_1.02 | 10 | ACCATATGGT |
| M0300_1.02 | 10 | AATGACGTCA |
| M0305_1.02 | 9 | GCCACGTGT |
| M0307_1.02 | 8 | ATACGTTT |
| M0395_1.02 | 8 | GTACTAAT |
| M0396_1.02 | 10 | AACGGTAGCA |
| M0398_1.02 | 11 | AGGAAGTGCAA |
| M0404_1.02 | 10 | AAGGGGGGCA |
| M0405_1.02 | 10 | TGGGCGTGGC |
| M0408_1.02 | 10 | ATGTGCACAT |
| M0413_1.02 | 10 | GTTGCGGGAT |
| M0415_1.02 | 8 | ATAACGGT |
| M0422_1.02 | 10 | CCGGGGGGTC |
| M0424_1.02 | 10 | TTTGACAGCT |
| M0428_1.02 | 8 | AGGAGCAC |
| M0431_1.02 | 9 | ACGGTAGCA |
| M0432_1.02 | 9 | CGCGCGCAC |
| M0433_1.02 | 10 | ATCTAGAACA |
| M0436_1.02 | 10 | TTGTTTATTG |
| M0437_1.02 | 9 | TATATATAT |
| M0442_1.02 | 9 | AATGCAGTG |
| M0443_1.02 | 10 | TGGGCGTGGC |
| M0594_1.02 | 9 | ATTTGAATT |
| M0603_1.02 | 7 | TTAGCGG |
| M0607_1.02 | 9 | TCGTAAATA |
| M0608_1.02 | 10 | GAGGGCGTAA |
| M0609_1.02 | 10 | TCCCGCTGCC |
| M0610_1.02 | 9 | ATCGCGTTA |
| M0629_1.02 | 11 | AATGTATCAAT |
| M0630_1.02 | 10 | AATGTATCAA |
| M0632_1.02 | 10 | AATGTATCAA |
| M0633_1.02 | 10 | TAATGTATTA |
| M0635_1.02 | 13 | AACATGTATAAAA |
| M0714_1.02 | 10 | AACCGGAAGT |
| M0718_1.02 | 10 | ATGTAAACAA |
| M0719_1.02 | 8 | GTAAACAA |
| M0728_1.02 | 12 | AATAAACAAACA |
| M0736_1.02 | 8 | GTAAACAA |
| M0737_1.02 | 10 | TATGTAAACA |
| M0747_1.02 | 10 | AATGTAAACA |
| M0756_1.02 | 9 | GTAAACAAA |
| M0887_1.02 | 9 | CCTAATGAG |
| M0890_1.02 | 8 | GTAATCAA |
| M0891_1.02 | 10 | TTAATTGGTT |
| M0892_1.02 | 10 | CCTAATTACC |
| M0893_1.02 | 10 | ATTAATTAAT |
| M0894_1.02 | 8 | TTAATTAG |
| M0896_1.02 | 8 | TTAATTAG |
| M0897_1.02 | 10 | TTTTATTGGC |
| M0898_1.02 | 8 | TTACGTAA |
| M0900_1.02 | 8 | TTAATTAG |
| M0901_1.02 | 8 | CTTGTCAA |
| M0905_1.02 | 9 | TTAATTACC |
| M0906_1.02 | 10 | AATTAATTAG |
| M0931_1.02 | 9 | TAATTAATT |
| M0937_1.02 | 7 | TGATACC |
| M0942_1.02 | 8 | TTGTAATT |
| M0943_1.02 | 8 | GTTAATTA |
| M0949_1.02 | 7 | TTAATGA |
| M0952_1.02 | 8 | TGATACCC |
| M0958_1.02 | 7 | CTAATTA |
| M0961_1.02 | 9 | CTAATTGGT |
| M0969_1.02 | 9 | CTAATCAGC |
| M0975_1.02 | 9 | TAATTAATT |
| M0994_1.02 | 9 | ATGATACCT |
| M0996_1.02 | 7 | GAAATCA |
| M0999_1.02 | 9 | ATTAATTAC |
| M1007_1.02 | 9 | TTTATGACC |
| M1012_1.02 | 9 | TTAATGACT |
| M1016_1.02 | 7 | GTGATAC |
| M1018_1.02 | 7 | TAATTAA |
| M1025_1.02 | 8 | ACTAATTA |
| M1027_1.02 | 9 | TTAATTACC |
| M1030_1.02 | 9 | ACCACTTAA |
| M1034_1.02 | 7 | GCAATTA |
| M1039_1.02 | 9 | GCTAATTGG |
| M1049_1.02 | 10 | ATGATACCCC |
| M1070_1.02 | 9 | TTAATGACT |
| M1071_1.02 | 8 | TTAATGAC |
| M1073_1.02 | 9 | TTAATGACC |
| M1110_1.02 | 10 | TAGCAATAGA |
| M1125_1.02 | 10 | GCTAATTGGT |
| M1157_1.02 | 10 | TTTTATGACC |
| M1163_1.02 | 9 | ATTAATTAC |
| M1266_1.02 | 10 | GACCGAAACC |
| M1281_1.02 | 9 | CTTACGCAA |
| M1358_1.02 | 9 | TAACCCTAG |
| M1359_1.02 | 10 | TTTTGCGCCA |
| M1418_1.02 | 8 | TGGTACCA |
| M1432_1.02 | 10 | ATTGACCTCT |
| M1458_1.02 | 10 | ATTGACCTCG |
| M1507_1.02 | 10 | AATTTTGGCT |
| M1528_1.02 | 10 | CCATGGCAAC |
| M1529_1.02 | 10 | CCATAGCAAC |
| M1545_1.02 | 9 | CGTACGTCA |
| M1581_1.02 | 10 | TTTGCTGACT |
| M1582_1.02 | 11 | ATATATAATAA |
| M1583_1.02 | 8 | TTCATTGA |
| M1589_1.02 | 10 | ACAGAACAAT |
| M1592_1.02 | 8 | AAAACAAT |
| M1594_1.02 | 10 | TATTGTTTTT |
| M1601_1.02 | 9 | ATTGTTTTC |
| M1605_1.02 | 10 | ATTCATCTTT |
| M1628_1.02 | 11 | AGGTGTGAAAA |
| M1668_1.02 | 12 | TCCAAACGAGAT |
| M1838_1.02 | 15 | CATTGCCTCAGGGCA |
| M1841_1.02 | 15 | GAACATTCTGTTCTT |
| M1863_1.02 | 8 | GTAAACAT |
| M1868_1.02 | 14 | ACAGATAAGAATCT |
| M1871_1.02 | 10 | TGGGTGGGGC |
| M1882_1.02 | 21 | AAAGTGAAAGTGAAAGTAAAA |
| M1884_1.02 | 15 | AGCTAAAAATAGCAT |
| M1889_1.02 | 10 | AAGCACATGG |
| M1890_1.02 | 18 | AGAGTGCTGATTGGTCCA |
| M1906_1.02 | 11 | GGGGGCGGGGC |
| M1915_1.02 | 20 | GCAAGGCATTATGGGAAATC |
| M1917_1.02 | 11 | GGTCACGTGGC |
| M1919_1.02 | 12 | CAAGATGGCGGC |
| M1925_1.02 | 11 | TATTGTGCAAT |
| M1926_1.02 | 9 | CAGGTGAGG |
| M1927_1.02 | 8 | GCCACGTG |
| M1928_1.02 | 11 | GGGAATTTCCC |
| M1929_1.02 | 15 | CATGTCTGGGCATGT |
| M1934_1.02 | 20 | AGGTCAGGGTGACCTGGGCC |
| M1950_1.02 | 6 | GTGGAT |
| M1955_1.02 | 11 | TTTCCAGGAAA |
| M1963_1.02 | 14 | GGGGCCGAGGCCTG |
| M1968_1.02 | 11 | TCCCTGGGGAC |
| M1970_1.02 | 6 | TGCCAA |
| M2065_1.02 | 15 | AGGTCAGGGTGACCT |
| M2264_1.02 | 8 | GCCATCTG |
| M2267_1.02 | 11 | TTTTATGGCTT |
| M2268_1.02 | 11 | TATTGCACAAT |
| M2270_1.02 | 11 | TAATTTAATCA |
| M2273_1.02 | 11 | GGGCGGGAAGG |
| M2275_1.02 | 13 | GAACCAGGAAGTG |
| M2277_1.02 | 11 | ACAGGAAGTGG |
| M2278_1.02 | 11 | TGTGACTCATT |
| M2281_1.02 | 11 | TCCAATCCACA |
| M2283_1.02 | 15 | CAAAAGTAAACAAAG |
| M2286_1.02 | 15 | TGGACTTTGAACTCT |
| M2287_1.02 | 13 | GGCCATAAATCAC |
| M2289_1.02 | 13 | AAGATGATGTCAT |
| M2292_1.02 | 11 | GGTGACTCATC |
| M2296_1.02 | 15 | CTGAGTCAGCAATTT |
| M2299_1.02 | 13 | AGGGACAGCTGCA |
| M2301_1.02 | 15 | AAATGGACCAATCAG |
| M2303_1.02 | 15 | TGACCTCTGACCTCT |
| M2305_1.02 | 11 | TGCGCAGGCGC |
| M2306_1.02 | 13 | TTCATTTGCATAT |
| M2307_1.02 | 15 | AGAAAGTGAAAGTGA |
| M2310_1.02 | 15 | CAAACCACAAACCCC |
| M2313_1.02 | 10 | CCATTGTTTT |
| M2314_1.02 | 15 | GGGAGGGGGCGGGGC |
| M2319_1.02 | 14 | TTCCTTTGATCTTT |
| M2321_1.02 | 20 | AGACATGCCCAGACATGCCC |
| M2323_1.02 | 15 | CAGATCTCGCGAGAG |
| M2385_1.02 | 11 | AAGTAAACAAA |
| M2387_1.02 | 10 | GTGGGGTGAT |
| M2388_1.02 | 10 | ATGGGGTGAT |
| M2390_1.02 | 8 | CAGGAAGG |
| M2391_1.02 | 10 | GGGGTGGGGC |
| M2392_1.02 | 19 | GTTGCCATGGCAACAGCGG |
| M4344_1.02 | 8 | GGTTGCTA |
| M4427_1.02 | 21 | GTGGCCACCAGGGGGCGCTGT |
| M4428_1.02 | 14 | AGAACATTCTGTTC |
| M4438_1.02 | 15 | AGGTCATGGTGACCT |
| M4444_1.02 | 14 | AGGGGATTTCCAAG |
| M4451_1.02 | 11 | GGTCACGTGAC |
| M4452_1.02 | 15 | TCTCGATATGACTCA |
| M4453_1.02 | 15 | AAGAGGAAGTGAAAC |
| M4454_1.02 | 15 | AAATCTCGCGAGAAC |
| M4459_1.02 | 20 | GTGCGGGGGCGGGGGGGGGG |
| M4461_1.02 | 21 | GCCTTCTGGGAATTGTAGTTC |
| M4462_1.02 | 11 | CACCGGAAGTG |
| M4463_1.02 | 18 | AATGTGGAAATGAGTCAG |
| M4467_1.02 | 15 | ATGCCAAAAATAGAA |
| M4469_1.02 | 14 | TCCATGGTGCTGAA |
| M4471_1.02 | 15 | GCAGCCAAGCGTGAC |
| M4473_1.02 | 15 | GCCAGCCAATCAGAG |
| M4476_1.02 | 15 | TCATCTGTTGCTAGG |
| M4477_1.02 | 19 | CTATGGCCATATAAGGCAA |
| M4478_1.02 | 20 | CAGGTGATTTCCGGGAAATG |
| M4479_1.02 | 11 | GCAGCAGCTGT |
| M4481_1.02 | 15 | GGTCACGTGGCCCGG |
| M4484_1.02 | 15 | CTGGGAATTGTAGTC |
| M4509_1.02 | 17 | ATTTGCATAACAAAGGA |
| M4511_1.02 | 8 | TGACCTCT |
| M4522_1.02 | 10 | CCGGAAGTGG |
| M4525_1.02 | 15 | AGCCTCAGGGCATGG |
| M4526_1.02 | 15 | GGGGGGTGACTCATC |
| M4527_1.02 | 21 | GGACTACAACTCCCAGCAGGC |
| M4532_1.02 | 10 | CCACGTGCTC |
| M4536_1.02 | 15 | GGGGAGGGCGCGCGG |
| M4537_1.02 | 15 | GGCGGGAAATTTGAA |
| M4543_1.02 | 11 | GGAACCACGTG |
| M4545_1.02 | 15 | AGAAAGTGAAAGTGA |
| M4551_1.02 | 17 | TTCATACTGGAGAGAAA |
| M4553_1.02 | 10 | GGTCACGTGC |
| M4565_1.02 | 14 | CAGGATGAGTCACC |
| M4567_1.02 | 15 | GCAAAGTAAACATAG |
| M4569_1.02 | 18 | GTCCCGGGTTCGAATCCC |
| M4572_1.02 | 15 | TGCTGACTCAGCAAA |
| M4600_1.02 | 11 | GCAGATAAGGA |
| M4604_1.02 | 21 | GGGGAGGAGGGAGGGGAGGAG |
| M4612_1.02 | 15 | CCGCCAGGGGGCGCC |
| M4619_1.02 | 11 | GGGTGACTCAT |
| M4623_1.02 | 15 | CGGTGACTCATCCTT |
| M4629_1.02 | 17 | CATGACTCAGCAATTTT |
| M4635_1.02 | 15 | GAAAATGAAACTGAA |
| M4636_1.02 | 21 | CTGCCCTCATCAAAGATGGCG |
| M4640_1.02 | 15 | GGGCAGGGGTCTCGG |
| M4665_1.02 | 15 | CAGATAAGAATCTGT |
| M4680_1.02 | 8 | GTCACGTG |
| M4681_1.02 | 10 | TGCTGAGTCA |
| M4692_1.02 | 10 | ACTACAACTC |
| M4698_1.02 | 15 | CTGGACTTTGGACTC |
| M4702_1.02 | 8 | TGACCTTT |
| M4708_1.02 | 10 | TATGCAAATA |
| M4840_1.02 | 11 | AAATGAGCAAC |
| M4850_1.02 | 21 | TGTTGTGTCCGTGCCATCTGG |
| M4930_1.02 | 11 | AAATCGTGACT |
| M4971_1.02 | 10 | GTAACAGCTG |
| M5116_1.02 | 9 | ACCACCTGT |
| M5209_1.02 | 11 | GTGGGCGTGGC |
| M5234_1.02 | 10 | GGTCACGTAC |
| M5284_1.02 | 10 | GCTAATTAGC |
| M5287_1.02 | 13 | CTAATTAAATTAA |
| M5291_1.02 | 13 | TTAATTTAATTAA |
| M5292_1.02 | 13 | GGATGATGCAATA |
| M5293_1.02 | 14 | TGATGACGTCATCG |
| M5294_1.02 | 10 | GTTAAACGGT |
| M5300_1.02 | 17 | TAATCGGTATTTAATTG |
| M5302_1.02 | 14 | TGATGACGTCATCA |
| M5303_1.02 | 17 | TGCTTTCTAGGAATTCA |
| M5304_1.02 | 10 | ACCATATGGT |
| M5307_1.02 | 12 | AAACATATGTTT |
| M5308_1.02 | 10 | ACCATATGTT |
| M5310_1.02 | 8 | TTAATTGG |
| M5320_1.02 | 15 | CCCGCATACAACGAA |
| M5321_1.02 | 10 | AACACGTGTT |
| M5322_1.02 | 8 | TTTTTATT |
| M5323_1.02 | 14 | TGATGACGTCATCG |
| M5325_1.02 | 14 | TGATGACGTGGCAT |
| M5335_1.02 | 18 | ATCGATAATTTTATCGAT |
| M5339_1.02 | 10 | GATAATTAGG |
| M5342_1.02 | 8 | GTAATTGG |
| M5343_1.02 | 8 | ATAATTAC |
| M5344_1.02 | 8 | GTAATTGG |
| M5345_1.02 | 10 | GTTAATCCGC |
| M5346_1.02 | 10 | GCTAATCCGT |
| M5348_1.02 | 13 | CTAATCTAATTAA |
| M5349_1.02 | 13 | CTAATTTAATCAA |
| M5363_1.02 | 12 | TTTCCCGCCAAA |
| M5377_1.02 | 12 | AACCCGGAAGTG |
| M5388_1.02 | 10 | GCTAATTAGC |
| M5390_1.02 | 10 | GCTAATTGGG |
| M5394_1.02 | 10 | GTTAATTAGA |
| M5398_1.02 | 10 | ACCGGAAGTG |
| M5414_1.02 | 10 | GTTAATTGGT |
| M5420_1.02 | 10 | ACCGGAAGTA |
| M5421_1.02 | 11 | AACCGGAAATA |
| M5422_1.02 | 10 | ACCGGAAGTG |
| M5425_1.02 | 15 | CCGGAAGCGGAAGTG |
| M5427_1.02 | 10 | GCTAATTACC |
| M5428_1.02 | 10 | GCTAATTACC |
| M5430_1.02 | 10 | AACACCTGTT |
| M5435_1.02 | 14 | TCGCTGTGTCATTC |
| M5445_1.02 | 14 | AGTAAATATTTTTT |
| M5446_1.02 | 7 | GTAAACA |
| M5460_1.02 | 7 | GTAAACA |
| M5471_1.02 | 14 | GTAAACATGTTTAC |
| M5480_1.02 | 10 | GCTAATTAGT |
| M5481_1.02 | 10 | GCTAATTGGT |
| M5487_1.02 | 10 | TATGCGGGTA |
| M5490_1.02 | 16 | GCTTCGTGGGGGGTCT |
| M5491_1.02 | 14 | CTTCGCGGGGGGTC |
| M5493_1.02 | 8 | GTACGTAA |
| M5497_1.02 | 17 | AACCGGTTTAACCGGTT |
| M5500_1.02 | 10 | GCTAATCCCT |
| M5501_1.02 | 10 | CCTAATCCGC |
| M5502_1.02 | 10 | TTTAATTAGG |
| M5503_1.02 | 10 | TTTAATTAGT |
| M5504_1.02 | 12 | TGGCACGTGCCG |
| M5506_1.02 | 12 | TGGCACGTGCCA |
| M5509_1.02 | 10 | GGCACGTGTC |
| M5512_1.02 | 9 | GGTGGGCAT |
| M5517_1.02 | 10 | ACTAGTTAAC |
| M5518_1.02 | 11 | TTTTAATTGCT |
| M5519_1.02 | 11 | TTTTAATTGGT |
| M5520_1.02 | 11 | TGTTAATTGCT |
| M5530_1.02 | 12 | TATAATCGTTTT |
| M5541_1.02 | 10 | GTTAATTACT |
| M5542_1.02 | 10 | GCTAATTAGT |
| M5543_1.02 | 10 | TTTAATTATT |
| M5544_1.02 | 10 | TTTTTATGGG |
| M5547_1.02 | 11 | GGTCGTAAAAT |
| M5551_1.02 | 9 | TTTTATTAC |
| M5553_1.02 | 10 | CCAATAAAAA |
| M5555_1.02 | 10 | GTCGTAAAAA |
| M5557_1.02 | 9 | GTAATAAAA |
| M5563_1.02 | 10 | GCTAATTAAC |
| M5567_1.02 | 13 | GAACGTTCTAGAA |
| M5568_1.02 | 15 | TTCGAAACGTTCGAA |
| M5571_1.02 | 10 | GACAGGTGTA |
| M5581_1.02 | 12 | CATGTCATGTAA |
| M5582_1.02 | 12 | CATGTCATGTAA |
| M5583_1.02 | 8 | TTAAGTGC |
| M5584_1.02 | 13 | TTAATCTAATTAA |
| M5587_1.02 | 9 | ATGACTCAT |
| M5591_1.02 | 18 | CAAAAAGGGGCGTGGCAT |
| M5592_1.02 | 14 | AAGGGGGCGTGGCC |
| M5593_1.02 | 11 | GGGGGCGTGGC |
| M5594_1.02 | 13 | CTCGACCTAATTA |
| M5602_1.02 | 8 | TTAATTGG |
| M5604_1.02 | 8 | TTAATTAA |
| M5605_1.02 | 8 | TTAATTAA |
| M5616_1.02 | 12 | GCTATAAATAGC |
| M5621_1.02 | 8 | CCTGTCAA |
| M5623_1.02 | 10 | GCTAATTAAC |
| M5624_1.02 | 10 | AGTAATTAAC |
| M5627_1.02 | 10 | CACAGGTGTT |
| M5628_1.02 | 8 | AGGTGTGA |
| M5631_1.02 | 10 | GTTAATTAGA |
| M5632_1.02 | 10 | ATCACGTGAT |
| M5634_1.02 | 10 | ACCACGTGCC |
| M5635_1.02 | 10 | TTTAATTACT |
| M5636_1.02 | 10 | AACAGCTGTT |
| M5637_1.02 | 18 | TAATTGGTTTTTAATTGC |
| M5643_1.02 | 12 | ACCGTTAAACGG |
| M5652_1.02 | 10 | GCCATATGGT |
| M5653_1.02 | 10 | GACATATGTT |
| M5660_1.02 | 15 | TTGGCACAGTGCCAA |
| M5662_1.02 | 15 | TTGGCACAGTGCCAG |
| M5664_1.02 | 15 | TTGGCACTGTGCCAA |
| M5672_1.02 | 10 | GCTAATTAGC |
| M5689_1.02 | 11 | AATTTGCTGAC |
| M5690_1.02 | 10 | AACATATGTT |
| M5691_1.02 | 10 | ACCATATGTT |
| M5693_1.02 | 10 | ACCATATGTT |
| M5697_1.02 | 14 | ATTATTGATTTTTT |
| M5702_1.02 | 17 | TGCAGTCATGCGTGACG |
| M5704_1.02 | 10 | TAATCGATTA |
| M5705_1.02 | 8 | CTAATTAG |
| M5709_1.02 | 10 | TAATCGATTA |
| M5711_1.02 | 17 | TGCAGTCATGCGTGACG |
| M5714_1.02 | 11 | TAATTTAATTA |
| M5715_1.02 | 11 | TAATTTAATTA |
| M5717_1.02 | 9 | CTTAATCCC |
| M5720_1.02 | 9 | CTTAATCCC |
| M5722_1.02 | 12 | TGACACCTGTCA |
| M5729_1.02 | 9 | ATTTGCATA |
| M5735_1.02 | 13 | AAATTAGCATAAT |
| M5738_1.02 | 9 | ATTTGCATA |
| M5740_1.02 | 14 | ATGAATAATTAATG |
| M5743_1.02 | 16 | ATGCATAATTAATGAG |
| M5744_1.02 | 9 | ATTTGCATA |
| M5746_1.02 | 10 | ATAATGAGCT |
| M5750_1.02 | 13 | GGGGGCCTTGAAA |
| M5753_1.02 | 12 | CAAGACGTCTTA |
| M5771_1.02 | 10 | GTTAATTGGC |
| M5772_1.02 | 8 | TTAATTAG |
| M5777_1.02 | 16 | CGTTGCCATGGCAACG |
| M5782_1.02 | 9 | GGATAATCC |
| M5804_1.02 | 15 | GAGCAACAGGTGGTT |
| M5805_1.02 | 13 | ATGCAACAGGTGG |
| M5807_1.02 | 8 | TTAATTGG |
| M5815_1.02 | 12 | ACAATAACATTG |
| M5825_1.02 | 15 | AACACTACCATTGTT |
| M5835_1.02 | 16 | AACAATGTTCATTGTT |
| M5838_1.02 | 16 | AACAATGTGCAGTGTT |
| M5856_1.02 | 12 | AGTGGGCGTGGC |
| M5857_1.02 | 11 | ACCCGGATGTA |
| M5865_1.02 | 14 | AAAAAGAGGAAGTA |
| M5873_1.02 | 10 | AGGTGTGAAA |
| M5875_1.02 | 20 | AGGTGTGAAAAAAGGTGTGA |
| M5880_1.02 | 19 | AGGTGTGAAATTCACACCT |
| M5882_1.02 | 20 | TTTCACACCTAGGTGTGAAA |
| M5883_1.02 | 16 | TCACACCTTCACACCT |
| M5889_1.02 | 16 | GGTGTGAATTCACACC |
| M5896_1.02 | 8 | AGGTGTGA |
| M5903_1.02 | 12 | AAAGATCAAAGG |
| M5932_1.02 | 10 | ATCACGTGAT |
| M5934_1.02 | 12 | TGACAGCTGTCA |
| M5935_1.02 | 12 | TGACAGCTGTCA |
| M5941_1.02 | 13 | CTAATTTAATTAG |
| M5944_1.02 | 8 | CTAATTAC |
| M5945_1.02 | 8 | CTAATTAC |
| M5949_1.02 | 8 | CTAATTAT |
| M5955_1.02 | 11 | TAATGGCGGAC |
| M5958_1.02 | 13 | TATGTCGCGATAG |
| M5959_1.02 | 17 | TTTCGCCTGGCACGTCA |
| M5962_1.02 | 12 | TTCGGTGGTCGC |
| M5965_1.02 | 15 | GCACAGCGGGGGGTC |
| M5967_1.02 | 19 | ATGTTAAATGTAGATTAAG |
| M5970_1.02 | 17 | GTCGTGTTGTGGGAAAG |
| M5971_1.02 | 14 | TCGAGGCTAGACCA |
| M5972_1.02 | 17 | GAGTATTATGGGATGGA |
| M5973_1.02 | 18 | AGGTGTTCTGTTAACACT |
| M5974_1.02 | 12 | GGGTTCGAGGGT |
| M5976_1.02 | 17 | TTCGTGGCATTTTTCTA |
| M5977_1.02 | 10 | GTGGGGGGGG |
| M5979_1.02 | 12 | TGTGGGAAAAGC |
| M5980_1.02 | 10 | AGGTAGGTAC |
| M5981_1.02 | 15 | TTTTCAGTGTGTGCA |
| M5998_1.02 | 12 | GATGACGTCATT |
| M6037_1.02 | 12 | TTTGTCATGTAG |
| M6111_1.02 | 13 | AGAAAGGGTTAAT |
| M6114_1.02 | 10 | AAAGCAAACA |
| M6115_1.02 | 15 | CATGTCTGGGCATGT |
| M6119_1.02 | 15 | AAAAAGAGGAAGTGG |
| M6123_1.02 | 15 | GGGGTGGGGGAGGGG |
| M6131_1.02 | 21 | CCGGTTCAAACCGGTTCTGGC |
| M6139_1.02 | 9 | GCACGCAAC |
| M6140_1.02 | 18 | ATTGGTTTTATTGGTTAA |
| M6141_1.02 | 12 | TAATTCAATTAT |
| M6144_1.02 | 10 | GCCCCCGGGC |
| M6146_1.02 | 14 | ACGCGCCTCGGGCG |
| M6147_1.02 | 22 | TTTAATTTGATTTCGATTAATT |
| M6149_1.02 | 13 | TGTTAGTATTGTG |
| M6150_1.02 | 12 | GCCTCCCACGCC |
| M6151_1.02 | 8 | TCACGTGC |
| M6152_1.02 | 10 | GTGACGTCAC |
| M6154_1.02 | 12 | TAAGGAAGAAGG |
| M6155_1.02 | 12 | GTGGTGACGTGG |
| M6157_1.02 | 10 | TTATTAATTG |
| M6159_1.02 | 16 | TTCCTAGAAAGCTTTT |
| M6161_1.02 | 20 | ACAGGGTCACGTGCAGAAGG |
| M6162_1.02 | 14 | GGGTCACGTGTCCA |
| M6163_1.02 | 12 | TTTGTTGTTTTC |
| M6164_1.02 | 25 | ACATAGTGACACCTAGGTGTGAAAT |
| M6166_1.02 | 15 | ATTATGTTAAATCAC |
| M6167_1.02 | 8 | ACATAAAT |
| M6171_1.02 | 11 | AATTGTGCAAT |
| M6172_1.02 | 12 | AAGATTGCGCAA |
| M6173_1.02 | 13 | CAGATTGCAAAAT |
| M6174_1.02 | 11 | AGCCAATCAGC |
| M6176_1.02 | 12 | TGACCTTTGACC |
| M6180_1.02 | 9 | GTGACGTCA |
| M6181_1.02 | 11 | CACTGACGTCA |
| M6182_1.02 | 8 | CTAATCCC |
| M6184_1.02 | 14 | AGGGGGATCGATGG |
| M6185_1.02 | 7 | CGTTGGC |
| M6186_1.02 | 11 | TATTACATAAC |
| M6187_1.02 | 13 | GGGGATTGCATTT |
| M6188_1.02 | 8 | ATAATTAT |
| M6189_1.02 | 10 | GATAATTACA |
| M6191_1.02 | 10 | GGCGCGAAAC |
| M6192_1.02 | 10 | CGCGCGAAAC |
| M6194_1.02 | 10 | CGCGCCAAAC |
| M6196_1.02 | 13 | TAAGGCGCGAAAA |
| M6197_1.02 | 9 | CGTGACGTC |
| M6199_1.02 | 11 | GGCGTGGGCGG |
| M6200_1.02 | 11 | AGAGTGGGTGT |
| M6201_1.02 | 11 | GGCGGCAGGGC |
| M6204_1.02 | 15 | TAGCAGGAAGTGAGT |
| M6205_1.02 | 14 | GGCAAACAGGAAAT |
| M6206_1.02 | 11 | ATAAGGAAGTA |
| M6207_1.02 | 9 | ACCGGAAGT |
| M6208_1.02 | 12 | CCCAGGAAGTGC |
| M6210_1.02 | 13 | TGCCCACGTGGTG |
| M6211_1.02 | 14 | CGGGGATACGAAAT |
| M6212_1.02 | 13 | CCCACGTACTCAC |
| M6213_1.02 | 11 | ACCGGAAATCC |
| M6215_1.02 | 9 | TGACCTTGA |
| M6216_1.02 | 9 | TGACCTTGA |
| M6221_1.02 | 11 | GCGGGAAGTGG |
| M6222_1.02 | 8 | CAGGAAGT |
| M6223_1.02 | 13 | GACAGGAAGTAAC |
| M6224_1.02 | 17 | GCCACAGGAAGTAACAC |
| M6225_1.02 | 16 | AAGATAAGATAAGATA |
| M6226_1.02 | 10 | CAGGAAATAA |
| M6228_1.02 | 10 | CTGACTCATC |
| M6234_1.02 | 13 | ACAAAGCAAACAA |
| M6235_1.02 | 15 | CTTAAGTAAACAATG |
| M6236_1.02 | 15 | TCTGGCAAAACAAAC |
| M6237_1.02 | 9 | AAACAAACA |
| M6238_1.02 | 11 | AAAATAAACAT |
| M6239_1.02 | 11 | AAAAGTAAACA |
| M6240_1.02 | 12 | AACCAATCAGAG |
| M6241_1.02 | 10 | TAAATAAACA |
| M6242_1.02 | 13 | TAAACAAAAACAA |
| M6244_1.02 | 13 | AAAAACAAACAAC |
| M6245_1.02 | 16 | AAAAAGTAAACAAACT |
| M6246_1.02 | 13 | AGGTAAACAAACA |
| M6247_1.02 | 9 | AATAAACAA |
| M6249_1.02 | 9 | AAACAAATT |
| M6250_1.02 | 12 | AAATAAACAATT |
| M6251_1.02 | 12 | TTGTGTTTTTTT |
| M6256_1.02 | 9 | ACAGATAAC |
| M6257_1.02 | 17 | TAAGAGATAACTTAGAT |
| M6258_1.02 | 7 | AAGATAA |
| M6259_1.02 | 14 | CACATGCGGGTATT |
| M6262_1.02 | 11 | TGCAGTGATTT |
| M6263_1.02 | 10 | GCTGTGATTT |
| M6264_1.02 | 11 | CTGGGTGGTCT |
| M6265_1.02 | 11 | GTGGGTGGTCT |
| M6266_1.02 | 11 | TTGGGTGGTCC |
| M6267_1.02 | 10 | GTGGGGGGTA |
| M6268_1.02 | 12 | AATGCCAGACGC |
| M6269_1.02 | 9 | ATTCATTGA |
| M6270_1.02 | 20 | AGGGACGCAGCTGCTCCCCA |
| M6271_1.02 | 13 | GGGCTCGTGGCGG |
| M6272_1.02 | 16 | AGGCCACGTGCCGGAT |
| M6273_1.02 | 17 | GGGGGCACGTGGCATTA |
| M6274_1.02 | 9 | GGGTTGCCC |
| M6275_1.02 | 12 | GCGTACGTGCGG |
| M6276_1.02 | 16 | GCGCTAGCGGACGTTA |
| M6277_1.02 | 13 | CTGTTACATAATC |
| M6278_1.02 | 12 | TAGGGCTGCAAA |
| M6279_1.02 | 7 | AAAATAC |
| M6280_1.02 | 15 | AATAATCGCGAATAT |
| M6281_1.02 | 15 | TGTTAATTATTAACC |
| M6282_1.02 | 14 | GTTAATCATTAACC |
| M6285_1.02 | 14 | TTTATTGATTTTTT |
| M6287_1.02 | 14 | AGAATGTTCTAGAA |
| M6289_1.02 | 12 | TCATAAATTATA |
| M6290_1.02 | 11 | CCAATAAAACC |
| M6291_1.02 | 10 | CATCCATCAA |
| M6292_1.02 | 10 | CATTAATCAA |
| M6293_1.02 | 15 | TCCAATCTATTGATT |
| M6295_1.02 | 10 | CCATCCATCA |
| M6296_1.02 | 13 | TTCATCAATCATT |
| M6297_1.02 | 10 | CATTAATCAA |
| M6298_1.02 | 11 | GCATTAATCAA |
| M6299_1.02 | 15 | AAAGTAATAAATCAT |
| M6300_1.02 | 14 | GGGCATTAATCAAA |
| M6301_1.02 | 10 | AATTAAAGCA |
| M6302_1.02 | 11 | TCCCTAATAAA |
| M6303_1.02 | 8 | TTAATTGA |
| M6304_1.02 | 10 | TAATTAAATT |
| M6306_1.02 | 12 | TGTCAGGGGGCA |
| M6308_1.02 | 14 | GGAAAGTGAAAGCA |
| M6309_1.02 | 17 | GGAAAGCGAAACTGAAA |
| M6311_1.02 | 20 | TAAAGGAAAGCCAAAAGTGA |
| M6312_1.02 | 10 | GAAAGTGAAA |
| M6313_1.02 | 15 | GAGAAAGTGAAACTG |
| M6314_1.02 | 12 | GAAAGCGAAACT |
| M6315_1.02 | 7 | GTTAATG |
| M6316_1.02 | 9 | ACAGGTGCA |
| M6321_1.02 | 17 | GGCGGGGAGGTGGGGGC |
| M6322_1.02 | 11 | CAGGGTGTGGC |
| M6323_1.02 | 15 | TGCCTGGGTGTGGCT |
| M6324_1.02 | 10 | TGGGTGGGGC |
| M6325_1.02 | 8 | GGGGGCGG |
| M6326_1.02 | 9 | CAGGGGGTG |
| M6327_1.02 | 7 | CTTTGAT |
| M6328_1.02 | 13 | CACTTTTAATTAG |
| M6329_1.02 | 13 | AAAATTAATTAAT |
| M6330_1.02 | 21 | GTGCTGACCCCGCAGCCTTCG |
| M6331_1.02 | 9 | TGCTGACGG |
| M6332_1.02 | 8 | TTGCTGAC |
| M6333_1.02 | 7 | CATGACT |
| M6336_1.02 | 17 | GGGGGGGGGAGGGAGGG |
| M6337_1.02 | 11 | GGGGCCGGAGG |
| M6338_1.02 | 17 | TACAACAACCTGTTCTT |
| M6339_1.02 | 7 | CTCCGGG |
| M6342_1.02 | 12 | GCTAAAAATAGC |
| M6343_1.02 | 13 | CATAAAACTGTCA |
| M6344_1.02 | 13 | TGACAGCTGTCAA |
| M6345_1.02 | 10 | ATCACATGAC |
| M6346_1.02 | 19 | CCACGACGGTGTCACATGC |
| M6347_1.02 | 7 | TAATTGT |
| M6348_1.02 | 17 | AGTGCCGTGTGCAAAAC |
| M6349_1.02 | 10 | TCAACCTGCA |
| M6350_1.02 | 7 | CAGTTGG |
| M6352_1.02 | 8 | CCACGTGG |
| M6353_1.02 | 7 | GCAGCTG |
| M6354_1.02 | 9 | GACAGCTGC |
| M6355_1.02 | 13 | TGACAGCTGCTGC |
| M6356_1.02 | 9 | GGTGGGGAA |
| M6357_1.02 | 8 | TTTAATGG |
| M6358_1.02 | 12 | CGGCAGATGGCC |
| M6359_1.02 | 7 | AATGACT |
| M6360_1.02 | 12 | CATGACTCAGCA |
| M6361_1.02 | 13 | ATGGAAATTTCCA |
| M6363_1.02 | 9 | AATTTTCCA |
| M6364_1.02 | 9 | AGTTTTCCA |
| M6365_1.02 | 10 | AAATTTTCCT |
| M6366_1.02 | 15 | CATGGATTTTTCCAC |
| M6368_1.02 | 14 | ATGCATTACATAAC |
| M6370_1.02 | 11 | GGAATCTCCCT |
| M6373_1.02 | 14 | CAGCCAATCAGCGC |
| M6374_1.02 | 10 | CTCAAGTGCT |
| M6375_1.02 | 12 | AAACCACTTAAA |
| M6376_1.02 | 7 | TCAAGTG |
| M6377_1.02 | 9 | TTCAAGGAC |
| M6378_1.02 | 13 | AATAAGTATATAA |
| M6379_1.02 | 11 | AGTTAAGTGGA |
| M6380_1.02 | 9 | TTAATTGGT |
| M6381_1.02 | 10 | TCTCCCACGC |
| M6382_1.02 | 14 | TTTGACCTACTTTT |
| M6383_1.02 | 19 | CGTTGACCTTTGACCTTTA |
| M6384_1.02 | 14 | AGGTCATTGACCCT |
| M6385_1.02 | 19 | CTGAACTTTTTTGACCTCA |
| M6387_1.02 | 18 | CTGAACTTTCCTGACCTC |
| M6389_1.02 | 13 | CTGACCTCTGGCC |
| M6391_1.02 | 14 | TGACTTTTGACTTT |
| M6392_1.02 | 18 | TCAATTGAACTTTGTCCT |
| M6393_1.02 | 9 | GTGACCTTT |
| M6394_1.02 | 9 | GTGACCTTT |
| M6395_1.02 | 10 | CTGACCTTTG |
| M6396_1.02 | 10 | TGGCCTTGAA |
| M6397_1.02 | 13 | TGACCTTGAACTT |
| M6399_1.02 | 21 | GTCTTGTTATTGATTTTTTTT |
| M6400_1.02 | 8 | CTAATCCT |
| M6401_1.02 | 15 | CTTTAATCCCTTAAC |
| M6402_1.02 | 9 | TGTAACTGT |
| M6406_1.02 | 18 | GTTCAGTCATGCGTGACA |
| M6410_1.02 | 11 | TCAAGCGTGAA |
| M6411_1.02 | 14 | GTCACTGAAGCGTG |
| M6412_1.02 | 15 | CCCATCAATCAAATT |
| M6413_1.02 | 15 | CCATCAATCAATTTA |
| M6415_1.02 | 9 | CTAATTACC |
| M6416_1.02 | 11 | TTTGTGGTTTG |
| M6417_1.02 | 13 | ATATATTCATGAG |
| M6418_1.02 | 10 | TTTAATCCCA |
| M6419_1.02 | 13 | CATCAATCAAGCT |
| M6420_1.02 | 17 | GGGGGCATCAGGAGGGG |
| M6422_1.02 | 10 | CGGGGGGCCC |
| M6423_1.02 | 9 | ATTTGCATA |
| M6425_1.02 | 14 | TTTGCATTACAATG |
| M6426_1.02 | 10 | CATAAATAAT |
| M6427_1.02 | 13 | AAGCTCATTAATA |
| M6429_1.02 | 13 | CATAATTTATGCA |
| M6430_1.02 | 7 | TGACCTT |
| M6432_1.02 | 14 | TGACCTTTGTCCTA |
| M6433_1.02 | 18 | GTGACCTTTGACCTACTT |
| M6436_1.02 | 13 | TACAGACTGTTCT |
| M6438_1.02 | 15 | GAGTAATTAATATAA |
| M6439_1.02 | 7 | TAATCTG |
| M6440_1.02 | 7 | TTAATTG |
| M6441_1.02 | 21 | GGACAGCTGTTCTGTTTCCTG |
| M6442_1.02 | 17 | CCCTGCCCACCCCTTCC |
| M6443_1.02 | 7 | TGACCTC |
| M6445_1.02 | 11 | GCCCTGACCTC |
| M6446_1.02 | 20 | GTGACCTCTGGGTGACCCCC |
| M6448_1.02 | 12 | GGGGGATTTCCC |
| M6449_1.02 | 12 | TGGGGATTTCCC |
| M6451_1.02 | 12 | GTTGCTAGGGAA |
| M6453_1.02 | 14 | TTACCATGGCAACC |
| M6454_1.02 | 12 | TGACCTAGTTTT |
| M6455_1.02 | 13 | CTGACCTACTTTT |
| M6456_1.02 | 22 | GGGGGGGGGGGTGGTTTGGGGT |
| M6457_1.02 | 10 | TAACCACAAA |
| M6459_1.02 | 14 | AACCACAAAACCCA |
| M6461_1.02 | 10 | TGTGACCTCA |
| M6462_1.02 | 13 | GTGACCTTTGACC |
| M6463_1.02 | 12 | AGCCTGTCTGCC |
| M6464_1.02 | 11 | GTGTCTGTCTG |
| M6465_1.02 | 10 | GTGTCTGGCC |
| M6466_1.02 | 9 | TGTCTGGCC |
| M6468_1.02 | 8 | CCAGGTGG |
| M6469_1.02 | 7 | TCAGGTG |
| M6470_1.02 | 7 | TCTTTGT |
| M6471_1.02 | 8 | CATTGTTC |
| M6472_1.02 | 7 | CATTGTT |
| M6473_1.02 | 18 | CAACAATCTTCATTGTCC |
| M6474_1.02 | 19 | GGAAAAGAACAATGGGTTC |
| M6475_1.02 | 16 | ATTTGCATAACAATGG |
| M6476_1.02 | 12 | GAGAACAAAGCG |
| M6477_1.02 | 8 | TAACAATA |
| M6478_1.02 | 11 | AGAACAATGGG |
| M6482_1.02 | 20 | GGGGGGGGGCGGGGCCGGGG |
| M6483_1.02 | 24 | GGGGCCAGGGGGGGGGCGGGGCCG |
| M6485_1.02 | 12 | AAAAAGAGGAAG |
| M6486_1.02 | 16 | CGGCTGTTACCCTGGG |
| M6490_1.02 | 9 | AAAACAAAA |
| M6491_1.02 | 12 | TTTCCAGGAATT |
| M6492_1.02 | 13 | TTTTCTAGGAATT |
| M6496_1.02 | 13 | TTTCCCAGAAAAG |
| M6497_1.02 | 13 | TTCCCAGGAATTT |
| M6498_1.02 | 9 | TGACCTTGA |
| M6499_1.02 | 9 | CGTGGGAAA |
| M6500_1.02 | 12 | GACCATCTGTTC |
| M6503_1.02 | 25 | GTCGCTTTTCACACCTCTGATGGCA |
| M6504_1.02 | 24 | AGGTAGAGAATTAGGTGATAAAAA |
| M6505_1.02 | 8 | AGGTGTGA |
| M6506_1.02 | 12 | GCGCTTTGTTCT |
| M6507_1.02 | 14 | CACATTCCTGCGCC |
| M6508_1.02 | 15 | GATATTTCTGCTTTA |
| M6509_1.02 | 12 | AAAAATAGCTCT |
| M6510_1.02 | 14 | TGTTTATGTAAATG |
| M6513_1.02 | 11 | GCCAGCTGCGG |
| M6514_1.02 | 16 | GCCTGAACTGGCCAGA |
| M6515_1.02 | 14 | AAATGGCGGGAAAC |
| M6516_1.02 | 11 | GACCATCTGGT |
| M6517_1.02 | 10 | GGTCATGTGG |
| M6518_1.02 | 9 | GGTCACGTG |
| M6519_1.02 | 16 | CAGGTGACACCTGACA |
| M6521_1.02 | 10 | CTGACCTGAA |
| M6523_1.02 | 17 | TGACCTGACCTGACCTC |
| M6525_1.02 | 11 | CGCCAAGGAGC |
| M6527_1.02 | 10 | ACCCAGGTGG |
| M6529_1.02 | 7 | TTTCTGG |
| M6532_1.02 | 7 | TGACCTC |
| M6534_1.02 | 11 | TTAGCTAATTA |
| M6535_1.02 | 13 | GCGGGGGCGGGGG |
| M6536_1.02 | 12 | GACGTGTCATTA |
| M6537_1.02 | 11 | GGGGATTGGCC |
| M6539_1.02 | 22 | CGGAGAGGGGGAGGGGGGGGGC |
| M6540_1.02 | 15 | CAATAGCGATGGTGG |
| M6542_1.02 | 13 | AGATGATAGAGCC |
| M6544_1.02 | 12 | GGGGATTTCCCA |
| M6545_1.02 | 14 | GGTAGGGAAACCCC |
| M6546_1.02 | 11 | ATTAATAATTA |
| M6547_1.02 | 19 | GAGGGCCCCAGGCCTCGGC |
| M6548_1.02 | 9 | GGGGTGGTC |
| M6549_1.02 | 9 | GGGGTGGTC |
| M6550_1.02 | 9 | TGGGTGGTC |
| M6552_1.02 | 15 | GGGGTGGGGGAGGGG |
| M6553_1.02 | 12 | GAGGGGGGCGGA |
| M6554_1.02 | 14 | TCCAGATGTTTCGG |
| M6555_1.02 | 9 | CGATAATGA |
| M6556_1.02 | 24 | GGGCAACAAATACCTGCGCCCCGT |
| M6557_1.02 | 12 | GGAAAAAATCGG |
| M6558_1.02 | 15 | GCACCCTTGGGTGCC |
| M6559_1.02 | 16 | CCCACGGTTACTGCCG |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.314 C 0.186 G 0.186 T 0.314
| Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
|---|---|---|---|---|---|---|---|---|
| M6299_1.02 | HOXC6 | chr1 | - | 182913409 | 182913423 | 1.32e-06 | 0.3 | CAAGTAATCAATCAG |
| M6299_1.02 | HOXC6 | chr8 | + | 49890174 | 49890188 | 4.62e-06 | 0.3 | caaaaaataaatcac |
| M6299_1.02 | HOXC6 | chr8 | + | 30037736 | 30037750 | 5.12e-06 | 0.3 | aaagaaataaaacac |
| M6299_1.02 | HOXC6 | chr5 | - | 72812228 | 72812242 | 6.7e-06 | 0.3 | AAAGGAATGAATCAA |
| M6299_1.02 | HOXC6 | chr1 | - | 34302996 | 34303010 | 6.88e-06 | 0.3 | AAAGACATAAATCTT |
| M6299_1.02 | HOXC6 | chr18 | - | 48873734 | 48873748 | 6.96e-06 | 0.3 | AAATAAATAAATCAC |
| M6299_1.02 | HOXC6 | chr3 | - | 120533073 | 120533087 | 7.09e-06 | 0.3 | AAACTTATAAATCAA |
| M6299_1.02 | HOXC6 | chr1 | - | 27182094 | 27182108 | 9.07e-06 | 0.3 | AAATAAATAAATCAA |
| M6299_1.02 | HOXC6 | chr19 | + | 30180990 | 30181004 | 9.59e-06 | 0.3 | aaacaaataaatcct |
| M6299_1.02 | HOXC6 | chr12 | + | 50800029 | 50800043 | 9.59e-06 | 0.3 | acacaaataaatcat |
| M6299_1.02 | HOXC6 | chr21 | + | 41841196 | 41841210 | 1.03e-05 | 0.3 | aaagacataaatgat |
| M6299_1.02 | HOXC6 | chr19 | - | 33898314 | 33898328 | 1.19e-05 | 0.3 | AAAGACATGAATCAC |
| M6299_1.02 | HOXC6 | chr1 | - | 17040335 | 17040349 | 1.37e-05 | 0.3 | AAAGACATAATTCAC |
| M6299_1.02 | HOXC6 | chr9 | - | 133096176 | 133096190 | 1.37e-05 | 0.3 | AAAGACATAAATCTC |
| M6299_1.02 | HOXC6 | chr19 | + | 16221081 | 16221095 | 1.38e-05 | 0.3 | gaagttatcaatcat |
| M6299_1.02 | HOXC6 | chr7 | - | 35860966 | 35860980 | 1.5e-05 | 0.3 | TATGAAATAAATCAA |
| M6299_1.02 | HOXC6 | chr19 | + | 30207191 | 30207205 | 1.73e-05 | 0.3 | aaaataataaatcca |
| M6299_1.02 | HOXC6 | chr2 | + | 148007531 | 148007545 | 1.73e-05 | 0.3 | aaaataataaaacaa |
| M6299_1.02 | HOXC6 | chr6 | - | 10843748 | 10843762 | 1.87e-05 | 0.3 | AAAGACATAAATCCA |
| M6299_1.02 | HOXC6 | chr3 | - | 14750826 | 14750840 | 1.87e-05 | 0.3 | AAAGACATAAATCTA |
| M6299_1.02 | HOXC6 | chr13 | - | 20017498 | 20017512 | 1.87e-05 | 0.3 | AAAGACATAAATCTA |
| M6299_1.02 | HOXC6 | chrX | - | 36927912 | 36927926 | 1.87e-05 | 0.3 | AAAGACATAAATCTA |
| M6299_1.02 | HOXC6 | chr5 | - | 79273544 | 79273558 | 1.87e-05 | 0.3 | AAAGACATAAATCTA |
| M6299_1.02 | HOXC6 | chr3 | - | 120533159 | 120533173 | 1.87e-05 | 0.3 | AAAGACATAAATCTA |
| M6299_1.02 | HOXC6 | chr3 | - | 130948565 | 130948579 | 1.87e-05 | 0.3 | AAAGACATAAATCTA |
| M6299_1.02 | HOXC6 | chr1 | - | 179661206 | 179661220 | 1.87e-05 | 0.3 | AAAGACATAAATCTA |
| M6299_1.02 | HOXC6 | chr1 | - | 228245292 | 228245306 | 1.87e-05 | 0.3 | AAAGACATAAATCCA |
| M6299_1.02 | HOXC6 | chr2 | + | 20815404 | 20815418 | 1.87e-05 | 0.3 | aaagacataaatcta |
| M6299_1.02 | HOXC6 | chr15 | + | 34894119 | 34894133 | 1.87e-05 | 0.3 | aaagacataaatcta |
| M6299_1.02 | HOXC6 | chr10 | + | 59859785 | 59859799 | 1.87e-05 | 0.3 | aaagacataaatcta |
| M6299_1.02 | HOXC6 | chr8 | + | 75272026 | 75272040 | 1.87e-05 | 0.3 | aaagacataaatcta |
| M6299_1.02 | HOXC6 | chr4 | + | 120672759 | 120672773 | 1.87e-05 | 0.3 | aaagacataaatcta |
| M6299_1.02 | HOXC6 | chr2 | + | 121011188 | 121011202 | 1.87e-05 | 0.3 | aaagacataaatcta |
| M6299_1.02 | HOXC6 | chr3 | + | 138573325 | 138573339 | 1.87e-05 | 0.3 | aaagacataaatcca |
| M6299_1.02 | HOXC6 | chr6 | + | 170515093 | 170515107 | 1.87e-05 | 0.3 | aaagacataaatcta |
| M6299_1.02 | HOXC6 | chr2 | + | 237101774 | 237101788 | 1.87e-05 | 0.3 | aaagaaatcaatcca |
| M6299_1.02 | HOXC6 | chr14 | - | 32209800 | 32209814 | 1.94e-05 | 0.302 | AAAGGCAGAAATCAA |
| M6299_1.02 | HOXC6 | chr20 | - | 56876036 | 56876050 | 1.99e-05 | 0.302 | AAAAAAAAAAATCAT |
| M6299_1.02 | HOXC6 | chr1 | - | 244401157 | 244401171 | 2.13e-05 | 0.315 | GAAGAAATAATTCAT |
| M6299_1.02 | HOXC6 | chr18 | - | 2687690 | 2687704 | 2.2e-05 | 0.317 | AAAGACATAAATGAC |
| M6299_1.02 | HOXC6 | chr6 | + | 18049400 | 18049414 | 2.28e-05 | 0.32 | aaagtaagaaataat |
| M6299_1.02 | HOXC6 | chr12 | - | 50799879 | 50799893 | 2.49e-05 | 0.342 | AATGACATAAATCTT |
| M6299_1.02 | HOXC6 | chr19 | + | 30180761 | 30180775 | 2.8e-05 | 0.369 | caaataatatatcac |
| M6299_1.02 | HOXC6 | chr6 | - | 57165437 | 57165451 | 2.81e-05 | 0.369 | CAATCAATCAATCAT |
| M6299_1.02 | HOXC6 | chr11 | - | 108769351 | 108769365 | 3.01e-05 | 0.383 | AAAACCATAAATCAG |
| M6299_1.02 | HOXC6 | chr10 | + | 73333241 | 73333255 | 3.1e-05 | 0.383 | aaaacaaaaaatcat |
| M6299_1.02 | HOXC6 | chr5 | + | 131824779 | 131824793 | 3.28e-05 | 0.383 | aatataataaataat |
| M6299_1.02 | HOXC6 | chr12 | - | 95759224 | 95759238 | 3.38e-05 | 0.383 | AAAGTTATAAATCCA |
| M6299_1.02 | HOXC6 | chr5 | - | 41957134 | 41957148 | 3.43e-05 | 0.383 | AAAGACATCAACCAC |
| M6299_1.02 | HOXC6 | chr6 | - | 57165449 | 57165463 | 3.45e-05 | 0.383 | AAATCAATCAATCAA |
| M6299_1.02 | HOXC6 | chr22 | + | 28438276 | 28438290 | 3.57e-05 | 0.383 | AAAGTACTCCATCAT |
| M6299_1.02 | HOXC6 | chr17 | - | 37079357 | 37079371 | 3.58e-05 | 0.383 | AACAAAATAAATCAC |
| M6299_1.02 | HOXC6 | chr6 | - | 12104286 | 12104300 | 3.83e-05 | 0.383 | AAAGTAACAAAACAA |
| M6299_1.02 | HOXC6 | chr13 | - | 99782674 | 99782688 | 3.83e-05 | 0.383 | AGAGTAATAAATCCA |
| M6299_1.02 | HOXC6 | chr7 | - | 149467649 | 149467663 | 3.97e-05 | 0.383 | AAAGATATAAATCCT |
| M6299_1.02 | HOXC6 | chr12 | - | 3125207 | 3125221 | 4.04e-05 | 0.383 | AAAAAAAAAAATCAC |
| M6299_1.02 | HOXC6 | chr18 | - | 56739872 | 56739886 | 4.04e-05 | 0.383 | AAAAAAAAAAATCAC |
| M6299_1.02 | HOXC6 | chr19 | - | 11643034 | 11643048 | 4.18e-05 | 0.383 | CAACAAAAAAATCAC |
| M6299_1.02 | HOXC6 | chr20 | - | 45399143 | 45399157 | 4.37e-05 | 0.383 | AACCTAATATATCAT |
| M6299_1.02 | HOXC6 | chr18 | + | 76627643 | 76627657 | 4.4e-05 | 0.383 | aaagacataaatctg |
| M6299_1.02 | HOXC6 | chr13 | - | 20017396 | 20017410 | 4.61e-05 | 0.383 | AAAGAAAAAAATCTT |
| M6299_1.02 | HOXC6 | chr13 | - | 26596884 | 26596898 | 4.61e-05 | 0.383 | AAAGAAAGAACTCAT |
| M6299_1.02 | HOXC6 | chr10 | - | 44405004 | 44405018 | 4.61e-05 | 0.383 | AAAGAAAAAAACCAT |
| M6299_1.02 | HOXC6 | chr11 | - | 75052607 | 75052621 | 4.61e-05 | 0.383 | AAAGACATCAATCTA |
| M6299_1.02 | HOXC6 | chr5 | + | 89916321 | 89916335 | 4.61e-05 | 0.383 | aaagacatcaatcta |
| M6299_1.02 | HOXC6 | chr5 | + | 89916426 | 89916440 | 4.61e-05 | 0.383 | aaagaaaaaaatctt |
| M6299_1.02 | HOXC6 | chr13 | + | 113576766 | 113576780 | 4.61e-05 | 0.383 | catggaataaatctc |
| M6299_1.02 | HOXC6 | chr14 | + | 53137866 | 53137880 | 4.69e-05 | 0.383 | caagtcatcaataaa |
| M6299_1.02 | HOXC6 | chr3 | + | 193416837 | 193416851 | 4.71e-05 | 0.383 | aaaggcataaatctg |
| M6299_1.02 | HOXC6 | chr2 | + | 138579862 | 138579876 | 4.74e-05 | 0.383 | catatattaaatcat |
| M6299_1.02 | HOXC6 | chr4 | - | 144399993 | 144400007 | 4.85e-05 | 0.383 | AAAGGAATATATCTT |
| M6299_1.02 | HOXC6 | chr2 | - | 237907215 | 237907229 | 4.85e-05 | 0.383 | AAAGGAAAAAATCTT |
| M6299_1.02 | HOXC6 | chr1 | + | 220473651 | 220473665 | 4.85e-05 | 0.383 | aaaggcatcaatcca |
| M6299_1.02 | HOXC6 | chr2 | - | 190426008 | 190426022 | 5.07e-05 | 0.392 | AAACTCATCAGTCAA |
| M6299_1.02 | HOXC6 | chr15 | - | 89611603 | 89611617 | 5.1e-05 | 0.392 | CAACACATATATCAT |
| M6299_1.02 | HOXC6 | chr7 | + | 114033694 | 114033708 | 5.16e-05 | 0.392 | aaatgaatgaatcat |
| M6299_1.02 | HOXC6 | chr10 | + | 75312711 | 75312725 | 5.3e-05 | 0.392 | aatgtaaaaaatctt |
| M6299_1.02 | HOXC6 | chr20 | - | 38018777 | 38018791 | 5.37e-05 | 0.392 | AAAAAAAAAAATCAA |
| M6299_1.02 | HOXC6 | chr17 | + | 683372 | 683386 | 5.37e-05 | 0.392 | aaaaaaataaaacaa |
| M6299_1.02 | HOXC6 | chr10 | + | 90851060 | 90851074 | 5.53e-05 | 0.398 | caacaaaaaaatcaa |
| M6299_1.02 | HOXC6 | chr10 | - | 117299507 | 117299521 | 5.59e-05 | 0.398 | AAAAGAATAAAACAA |
| M6299_1.02 | HOXC6 | chr19 | - | 39412119 | 39412133 | 6.02e-05 | 0.419 | CATCTAATAAACCAA |
| M6299_1.02 | HOXC6 | chr11 | - | 34125001 | 34125015 | 6.09e-05 | 0.419 | AAAATAATCAATGAA |
| M6299_1.02 | HOXC6 | chr18 | + | 12564938 | 12564952 | 6.17e-05 | 0.419 | aaaggtataaattat |
| M6299_1.02 | HOXC6 | chr19 | + | 43911112 | 43911126 | 6.17e-05 | 0.419 | agacacataaatcaa |
| M6299_1.02 | HOXC6 | chr18 | + | 2815013 | 2815027 | 6.28e-05 | 0.421 | aatgaaaaaaatcag |
| M6299_1.02 | HOXC6 | chr1 | + | 240094345 | 240094359 | 6.78e-05 | 0.447 | AAATTAATAAATAAA |
| M6299_1.02 | HOXC6 | chr1 | - | 180744161 | 180744175 | 6.82e-05 | 0.447 | AGAGGAATAAATGAT |
| M6299_1.02 | HOXC6 | chr6 | - | 57165441 | 57165455 | 7.19e-05 | 0.461 | CAATCAATCAATCAA |
| M6299_1.02 | HOXC6 | chr6 | - | 57165445 | 57165459 | 7.19e-05 | 0.461 | CAATCAATCAATCAA |
| M6299_1.02 | HOXC6 | chr12 | + | 95513676 | 95513690 | 7.39e-05 | 0.464 | AATGTCATCAATGAA |
| M6299_1.02 | HOXC6 | chr21 | + | 36123187 | 36123201 | 7.46e-05 | 0.464 | aaaaaaataaataaa |
| M6299_1.02 | HOXC6 | chr16 | - | 30570721 | 30570735 | 7.72e-05 | 0.464 | AAATAAATAAATAAT |
| M6299_1.02 | HOXC6 | chr22 | - | 42013615 | 42013629 | 7.72e-05 | 0.464 | AAATAAATAAATAAT |
| M6299_1.02 | HOXC6 | chr21 | + | 36123219 | 36123233 | 7.72e-05 | 0.464 | aaataaataaataat |
| M6299_1.02 | HOXC6 | chr9 | + | 20427563 | 20427577 | 7.84e-05 | 0.464 | aaagtcatgaatcta |
| M6299_1.02 | HOXC6 | chr2 | + | 160754072 | 160754086 | 7.9e-05 | 0.464 | caagaAATTAAtcct |
| M6299_1.02 | HOXC6 | chr19 | + | 34067725 | 34067739 | 8e-05 | 0.464 | aaaggtataaaacac |
| M6299_1.02 | HOXC6 | chr6 | - | 100271369 | 100271383 | 8.46e-05 | 0.464 | GAAGACATGAATCAC |
| M6299_1.02 | HOXC6 | chr2 | + | 20815505 | 20815519 | 8.64e-05 | 0.464 | aaagaaaaaaatctc |
| M6299_1.02 | HOXC6 | chr6 | + | 170515048 | 170515062 | 8.83e-05 | 0.464 | aaagtagtcaaacaa |
| M6299_1.02 | HOXC6 | chr2 | + | 236547747 | 236547761 | 8.83e-05 | 0.464 | aaagtcatatttcaa |
| M6299_1.02 | HOXC6 | chr19 | - | 9507472 | 9507486 | 9.12e-05 | 0.464 | AAAGACATGAATCTT |
| M6299_1.02 | HOXC6 | chr15 | - | 69924573 | 69924587 | 9.12e-05 | 0.464 | AAAGACATTAATCTT |
| M6299_1.02 | HOXC6 | chr12 | - | 115939216 | 115939230 | 9.12e-05 | 0.464 | AAAGACATGAATCCT |
| M6299_1.02 | HOXC6 | chr1 | - | 233063660 | 233063674 | 9.12e-05 | 0.464 | AAAGACATGAATCCT |
| M6299_1.02 | HOXC6 | chr11 | + | 12489606 | 12489620 | 9.12e-05 | 0.464 | aaagacatgaatcct |
| M6299_1.02 | HOXC6 | chr13 | + | 24821212 | 24821226 | 9.12e-05 | 0.464 | aaagacattgatcat |
| M6299_1.02 | HOXC6 | chr8 | + | 30037896 | 30037910 | 9.12e-05 | 0.464 | aaagacatgaatcct |
| M6299_1.02 | HOXC6 | chr19 | + | 30207139 | 30207153 | 9.12e-05 | 0.464 | aaagacatgaatctt |
| M6299_1.02 | HOXC6 | chr5 | + | 67702212 | 67702226 | 9.12e-05 | 0.464 | aaagacatgaatcct |
| M6299_1.02 | HOXC6 | chr15 | + | 68969508 | 68969522 | 9.12e-05 | 0.464 | aaagacatgaatctt |
| M6299_1.02 | HOXC6 | chr1 | + | 114479408 | 114479422 | 9.14e-05 | 0.464 | aaaccaatccatcaa |
| M6299_1.02 | HOXC6 | chr3 | - | 38387042 | 38387056 | 9.18e-05 | 0.464 | AAAATCTTAAATCAG |
| M6299_1.02 | HOXC6 | chr15 | + | 81921255 | 81921269 | 9.28e-05 | 0.465 | aatgcaataaagcag |
| M6299_1.02 | HOXC6 | chr1 | + | 220256267 | 220256281 | 9.46e-05 | 0.465 | aaaataaaaaaccat |
| M6299_1.02 | HOXC6 | chr15 | - | 101946066 | 101946080 | 9.63e-05 | 0.465 | AATAAAATAAATTAT |
| M6299_1.02 | HOXC6 | chr13 | - | 113576721 | 113576735 | 9.82e-05 | 0.465 | AATGTAACACATCAC |
| M6299_1.02 | HOXC6 | chr9 | - | 97403883 | 97403897 | 9.9e-05 | 0.465 | AAAGAAATGAATCTA |
| M6299_1.02 | HOXC6 | chr3 | + | 10824886 | 10824900 | 9.9e-05 | 0.465 | aaagaaattaatcta |
| M6299_1.02 | HOXC6 | chr18 | + | 21032088 | 21032102 | 9.9e-05 | 0.465 | aaagatataaatcta |
| M6299_1.02 | HOXC6 | chr10 | + | 42917176 | 42917190 | 9.9e-05 | 0.465 | aaagatataaatcta |
| M6299_1.02 | HOXC6 | chr16 | + | 81777627 | 81777641 | 9.9e-05 | 0.465 | aaagaaatgaatcca |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_10 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif M6299_1.02 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
| output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_10 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
| background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
| allow clobber = true | compute q-values = true | parse genomic coord. = true |
| text only = false | scan both strands = true | max strand = false |
| threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
| alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.