Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
AAAGAYAT | 8 | AAAGACAT |
ATYTGTR | 7 | ATCTGTG |
CAAGHAG | 7 | CAAGAAG |
AAWTTTGG | 8 | AAATTTGG |
ATRTGTRG | 8 | ATATGTAG |
ATTATYTC | 8 | ATTATTTC |
TATTTGAA | 8 | TATTTGAA |
ATGAMAGR | 8 | ATGAAAGA |
AAAACTYC | 8 | AAAACTTC |
ATAAACHC | 8 | ATAAACTC |
GAADCTCA | 8 | GAAGCTCA |
AATRGCTG | 8 | AATGGCTG |
AACTGATG | 8 | AACTGATG |
AACTCYAA | 8 | AACTCCAA |
GGCCAARA | 8 | GGCCAAAA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.314 C 0.186 G 0.186 T 0.314
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
ATTATYTC | DREME-6 | chr5 | + | 452098 | 452105 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr16 | + | 2357578 | 2357585 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr18 | - | 2815101 | 2815108 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr4 | + | 2856545 | 2856552 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr6 | + | 3231061 | 3231068 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr6 | - | 4112391 | 4112398 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr20 | + | 4352599 | 4352606 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr20 | - | 4578744 | 4578751 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr3 | + | 5155466 | 5155473 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr19 | - | 8815942 | 8815949 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr3 | + | 14222097 | 14222104 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr16 | - | 14223802 | 14223809 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr3 | + | 14750866 | 14750873 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr19 | - | 15104137 | 15104144 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr10 | + | 15705224 | 15705231 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr11 | - | 17404289 | 17404296 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr6 | - | 18049391 | 18049398 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr6 | - | 18049407 | 18049414 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr20 | - | 18331850 | 18331857 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr9 | - | 18896163 | 18896170 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr16 | - | 20706152 | 20706159 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr18 | - | 21032056 | 21032063 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr22 | + | 24024585 | 24024592 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | + | 24740799 | 24740806 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr6 | - | 25205784 | 25205791 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr13 | + | 26596705 | 26596712 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr13 | + | 26596776 | 26596783 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr9 | - | 26937801 | 26937808 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr9 | - | 26937985 | 26937992 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr7 | - | 29906622 | 29906629 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr19 | + | 29936630 | 29936637 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr19 | - | 30180835 | 30180842 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr15 | + | 31012679 | 31012686 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr21 | - | 32167676 | 32167683 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr14 | + | 32209816 | 32209823 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr21 | + | 32716710 | 32716717 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr9 | + | 34712362 | 34712369 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr19 | - | 36647147 | 36647154 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr21 | + | 36681488 | 36681495 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr8 | + | 37457280 | 37457287 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | + | 38102998 | 38103005 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr20 | + | 38116985 | 38116992 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr17 | + | 38315728 | 38315735 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr3 | + | 38387208 | 38387215 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr22 | + | 38810171 | 38810178 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr20 | + | 41198757 | 41198764 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr20 | - | 41479271 | 41479278 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr5 | + | 41957174 | 41957181 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr4 | + | 42379278 | 42379285 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | - | 42545123 | 42545130 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr10 | - | 42545230 | 42545237 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr10 | - | 42917155 | 42917162 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr19 | - | 44255872 | 44255879 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr21 | + | 45401483 | 45401490 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr1 | + | 45821361 | 45821368 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr12 | - | 46046628 | 46046635 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr10 | + | 46170044 | 46170051 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr19 | + | 46380933 | 46380940 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chrX | + | 46989767 | 46989774 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr17 | + | 50009514 | 50009521 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr18 | + | 50534048 | 50534055 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | - | 55803204 | 55803211 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr6 | + | 57165289 | 57165296 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr14 | - | 58415792 | 58415799 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr20 | + | 58531450 | 58531457 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | - | 63600684 | 63600691 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr5 | + | 64987992 | 64987999 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr2 | - | 68757255 | 68757262 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr14 | + | 68801837 | 68801844 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | + | 69272878 | 69272885 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr15 | + | 69777581 | 69777588 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr15 | + | 69777746 | 69777753 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr6 | + | 71465477 | 71465484 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr15 | + | 72438131 | 72438138 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | - | 73306285 | 73306292 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr2 | - | 73334774 | 73334781 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr17 | - | 73621717 | 73621724 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr17 | - | 73621875 | 73621882 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chrX | + | 74339064 | 74339071 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr11 | + | 75052647 | 75052654 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | - | 75312567 | 75312574 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr9 | + | 75889669 | 75889676 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr15 | - | 76003525 | 76003532 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr9 | + | 79847293 | 79847300 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | + | 80296930 | 80296937 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr10 | - | 80297082 | 80297089 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr1 | - | 81489554 | 81489561 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr17 | - | 82609807 | 82609814 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr10 | - | 83357158 | 83357165 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr2 | - | 84771413 | 84771420 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr2 | - | 84771554 | 84771561 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr15 | + | 85132267 | 85132274 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr9 | + | 86573157 | 86573164 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr15 | + | 89611546 | 89611553 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr7 | + | 95458198 | 95458205 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr9 | + | 97403924 | 97403931 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr2 | - | 100163609 | 100163616 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr13 | - | 102659305 | 102659312 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr12 | + | 106217942 | 106217949 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr1 | - | 109937323 | 109937330 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr12 | + | 109977834 | 109977841 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr9 | + | 114044017 | 114044024 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr1 | - | 114479252 | 114479259 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr5 | + | 115345561 | 115345568 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr12 | + | 115555937 | 115555944 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr12 | + | 117013994 | 117014001 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr12 | - | 119745049 | 119745056 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr2 | - | 120192426 | 120192433 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr2 | - | 121011155 | 121011162 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr8 | + | 123308359 | 123308366 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr2 | + | 126817381 | 126817388 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr6 | + | 128616586 | 128616593 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chrX | - | 130658707 | 130658714 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr9 | + | 134076792 | 134076799 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr11 | - | 134132026 | 134132033 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr5 | - | 134982272 | 134982279 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr5 | - | 134982287 | 134982294 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr3 | + | 136281194 | 136281201 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr6 | + | 139341314 | 139341321 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr8 | + | 144031676 | 144031683 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr4 | + | 144399977 | 144399984 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr8 | - | 144741930 | 144741937 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr2 | - | 144749346 | 144749353 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr2 | - | 148007659 | 148007666 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr6 | - | 163768887 | 163768894 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr5 | - | 172760261 | 172760268 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr5 | - | 172760300 | 172760307 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr5 | + | 174785509 | 174785516 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr3 | - | 185830564 | 185830571 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr3 | - | 193416804 | 193416811 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr1 | - | 221331672 | 221331679 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr1 | - | 227987339 | 227987346 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr1 | + | 229685373 | 229685380 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr1 | - | 236779368 | 236779375 | 5.58e-05 | 0.244 | ATTATTTC |
ATTATYTC | DREME-6 | chr1 | + | 244401161 | 244401168 | 5.58e-05 | 0.244 | attatttc |
ATTATYTC | DREME-6 | chr7 | + | 316737 | 316744 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr7 | - | 316851 | 316858 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr17 | - | 683228 | 683235 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr18 | - | 2687409 | 2687416 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr5 | - | 4786365 | 4786372 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr18 | - | 26071175 | 26071182 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr17 | - | 29034818 | 29034825 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr22 | + | 32294302 | 32294309 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr19 | + | 33898207 | 33898214 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr19 | + | 33898383 | 33898390 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr19 | + | 33898536 | 33898543 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr20 | - | 34237902 | 34237909 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr20 | + | 36282940 | 36282947 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr20 | + | 41479191 | 41479198 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr20 | + | 46660703 | 46660710 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr12 | + | 50800226 | 50800233 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr5 | + | 56420531 | 56420538 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr15 | - | 57152771 | 57152778 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr17 | - | 58989823 | 58989830 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr10 | - | 60711662 | 60711669 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr17 | + | 62531167 | 62531174 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr10 | - | 63600629 | 63600636 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr15 | + | 67905887 | 67905894 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr15 | + | 68444548 | 68444555 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr5 | - | 73346868 | 73346875 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr15 | + | 85131965 | 85131972 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr1 | - | 90675586 | 90675593 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr7 | + | 95458283 | 95458290 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr6 | - | 110089506 | 110089513 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr9 | - | 112712941 | 112712948 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr7 | + | 128586938 | 128586945 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr5 | + | 132621913 | 132621920 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr2 | - | 150791743 | 150791750 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr5 | - | 158297332 | 158297339 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr5 | - | 158297516 | 158297523 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr6 | + | 159730019 | 159730026 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr6 | + | 163683303 | 163683310 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr6 | + | 163683333 | 163683340 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr3 | - | 196866311 | 196866318 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr2 | + | 202939205 | 202939212 | 8.89e-05 | 0.296 | attatctc |
ATTATYTC | DREME-6 | chr1 | - | 221331909 | 221331916 | 8.89e-05 | 0.296 | ATTATCTC |
ATTATYTC | DREME-6 | chr2 | + | 237907377 | 237907384 | 8.89e-05 | 0.296 | attatctc |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_15 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif ATTATYTC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_15 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF558.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.