# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF555.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF555.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF555.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF555.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:29:32 PST 2017) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF555.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:29:33 PST 2017) # host: kali # when: Mon Dec 18 16:44:12 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.399 C 0.105 G 0.107 T 0.389 MOTIF ATAAATAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATAAATAA TTATTTAT 586 140 1.2e-181 2.4e-177 # ATAAATAA TTATTTAT 586 140 1.2e-181 2.4e-177 letter-probability matrix: alength= 4 w= 8 nsites= 3102 E= 2.4e-177 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWC GWCTC 389 27 2.6e-121 5.3e-117 # GAGAC GTCTC 333 14 3.6e-107 7.4e-103 # GAGTC GACTC 235 13 1.8e-065 3.6e-061 letter-probability matrix: alength= 4 w= 5 nsites= 567 E= 5.3e-117 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 MOTIF ASAGWG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ASAGWG CWCTST 213 10 3.4e-060 6.4e-056 # ACAGAG CTCTGT 164 6 1.2e-046 2.2e-042 # AGAGTG CACTCT 69 0 2.1e-022 4.0e-018 # ACAGTG CACTGT 17 0 6.8e-006 1.3e-001 # AGAGAG CTCTCT 16 4 5.6e-003 1.1e+002 letter-probability matrix: alength= 4 w= 6 nsites= 242 E= 6.4e-056 1.000000 0.000000 0.000000 0.000000 0.000000 0.661157 0.338843 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.677686 0.000000 0.000000 0.322314 0.000000 0.000000 1.000000 0.000000 MOTIF CMTCTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CMTCTC GAGAKG 127 3 2.1e-037 3.9e-033 # CATCTC GAGATG 116 1 1.6e-036 3.0e-032 # CCTCTC GAGAGG 13 2 3.5e-003 6.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 130 E= 3.9e-033 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGKS DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTGKS SMCAG 178 53 8.6e-021 1.6e-016 # CTGGG CCCAG 71 12 2.6e-012 4.6e-008 # CTGGC GCCAG 43 12 1.1e-005 2.0e-001 # CTGTG CACAG 44 14 3.4e-005 6.2e-001 # CTGTC GACAG 45 16 9.1e-005 1.7e+000 letter-probability matrix: alength= 4 w= 5 nsites= 205 E= 1.6e-016 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.570732 0.429268 0.000000 0.424390 0.575610 0.000000 MOTIF CAAGAS DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAAGAS STCTTG 57 6 2.7e-012 4.5e-008 # CAAGAG CTCTTG 31 4 1.3e-006 2.2e-002 # CAAGAC GTCTTG 28 3 1.8e-006 3.0e-002 letter-probability matrix: alength= 4 w= 6 nsites= 61 E= 4.5e-008 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.475410 0.524590 0.000000 MOTIF GMMAC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GMMAC GTKKC 145 80 9.7e-007 1.6e-002 # GCAAC GTTGC 39 18 3.1e-003 5.1e+001 # GAAAC GTTTC 74 45 3.3e-003 5.5e+001 # GCCAC GTGGC 27 11 6.2e-003 1.0e+002 # GACAC GTGTC 22 8 7.4e-003 1.2e+002 letter-probability matrix: alength= 4 w= 5 nsites= 168 E= 1.6e-002 0.000000 0.000000 1.000000 0.000000 0.595238 0.404762 0.000000 0.000000 0.696429 0.303571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 32.30 seconds