# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF549.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF549.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF549.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF549.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Tue Dec 18 13:55:59 PST 2018) # negatives: 599 from /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF549.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Tue Dec 18 13:55:59 PST 2018) # host: kali.stanford.edu # when: Tue Dec 18 14:51:49 PST 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.274 C 0.225 G 0.223 T 0.279 MOTIF GCTGCCY DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GCTGCCY RGGCAGC 393 31 2.1e-119 6.1e-115 # GCTGCCC GGGCAGC 301 16 6.6e-090 1.9e-085 # GCTGCCT AGGCAGC 95 15 5.8e-017 1.7e-012 letter-probability matrix: alength= 4 w= 7 nsites= 402 E= 6.1e-115 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.758706 0.000000 0.241294 MOTIF ATTCATRA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATTCATRA TYATGAAT 277 6 1.1e-091 3.0e-087 # ATTCATGA TCATGAAT 252 6 7.1e-081 2.0e-076 # ATTCATAA TTATGAAT 25 0 2.3e-008 6.5e-004 letter-probability matrix: alength= 4 w= 8 nsites= 277 E= 3.0e-087 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.090253 0.000000 0.909747 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ARTTTAWT DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ARTTTAWT AWTAAAYT 172 8 3.0e-047 8.4e-043 # AGTTTATT AATAAACT 78 1 9.7e-024 2.7e-019 # AATTTAAT ATTAAATT 58 3 4.4e-015 1.2e-010 # AGTTTAAT ATTAAACT 43 0 5.2e-014 1.5e-009 # AATTTATT AATAAATT 29 4 4.2e-006 1.2e-001 letter-probability matrix: alength= 4 w= 8 nsites= 210 E= 8.4e-043 1.000000 0.000000 0.000000 0.000000 0.414286 0.000000 0.585714 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.490476 0.000000 0.000000 0.509524 0.000000 0.000000 0.000000 1.000000 MOTIF GGTTCWGA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GGTTCWGA TCWGAACC 89 1 2.3e-027 6.4e-023 # GGTTCAGA TCTGAACC 75 1 9.2e-023 2.5e-018 # GGTTCTGA TCAGAACC 35 0 1.7e-011 4.8e-007 letter-probability matrix: alength= 4 w= 8 nsites= 115 E= 6.4e-023 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.695652 0.000000 0.000000 0.304348 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGAGCAAW DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TGAGCAAW WTTGCTCA 101 12 1.4e-020 4.0e-016 # TGAGCAAA TTTGCTCA 77 8 1.7e-016 4.6e-012 # TGAGCAAT ATTGCTCA 25 4 4.3e-005 1.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 4.0e-016 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.754902 0.000000 0.000000 0.245098 MOTIF RCTCCA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST RCTCCA TGGAGY 156 54 2.9e-015 8.0e-011 # GCTCCA TGGAGC 87 29 6.9e-009 1.9e-004 # ACTCCA TGGAGT 72 27 1.4e-006 3.8e-002 letter-probability matrix: alength= 4 w= 6 nsites= 164 E= 8.0e-011 0.451220 0.000000 0.548780 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTKTTA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTKTTA TAAMAG 154 65 1.4e-011 3.9e-007 # CTGTTA TAACAG 72 26 7.1e-007 1.9e-002 # CTTTTA TAAAAG 90 41 3.6e-006 9.7e-002 letter-probability matrix: alength= 4 w= 6 nsites= 166 E= 3.9e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.427711 0.572289 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTTTARAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CTTTARAC GTYTAAAG 33 0 7.4e-011 2.0e-006 # CTTTAGAC GTCTAAAG 20 0 8.1e-007 2.2e-002 # CTTTAAAC GTTTAAAG 13 0 1.1e-004 3.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 2.0e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.393939 0.000000 0.606061 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCAGARK DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CCAGARK MYTCTGG 101 33 1.9e-010 5.0e-006 # CCAGAAT ATTCTGG 29 9 7.0e-004 1.9e+001 # CCAGAAG CTTCTGG 31 11 1.2e-003 3.3e+001 # CCAGAGT ACTCTGG 23 8 4.9e-003 1.3e+002 # CCAGAGG CCTCTGG 19 6 6.8e-003 1.8e+002 letter-probability matrix: alength= 4 w= 7 nsites= 103 E= 5.0e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.592233 0.000000 0.407767 0.000000 0.000000 0.000000 0.485437 0.514563 MOTIF CACATWAA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CACATWAA TTWATGTG 24 0 4.7e-008 1.3e-003 # CACATTAA TTAATGTG 17 0 6.8e-006 1.8e-001 # CACATAAA TTTATGTG 7 0 7.7e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.3e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.291667 0.000000 0.000000 0.708333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACAGCAG DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CACAGCAG CTGCTGTG 29 2 1.7e-007 4.5e-003 # CACAGCAG CTGCTGTG 29 2 1.7e-007 4.5e-003 letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 4.5e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CTCTSTGA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CTCTSTGA TCASAGAG 31 3 2.8e-007 7.3e-003 # CTCTCTGA TCAGAGAG 20 2 5.3e-005 1.4e+000 # CTCTGTGA TCACAGAG 11 1 3.1e-003 8.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 7.3e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.645161 0.354839 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGCYCA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CTGCYCA TGRGCAG 71 26 1.1e-006 2.9e-002 # CTGCCCA TGGGCAG 33 7 1.6e-005 4.2e-001 # CTGCTCA TGAGCAG 41 19 2.5e-003 6.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 74 E= 2.9e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.445946 0.000000 0.554054 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 57.32 seconds