Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
M0085_1.02 10 TTGCCTGAGG
M0104_1.02 11 ATATTAATTAA
M0105_1.02 9 TTTTAATTG
M0108_1.02 11 GATAATATTGA
M0177_1.02 10 ACCATATGTT
M0178_1.02 10 AACAGCTGTT
M0189_1.02 8 GCACGTGA
M0195_1.02 10 ACCATATGGT
M0196_1.02 10 GGCACGTGTC
M0198_1.02 10 AGCCCGTGCG
M0199_1.02 13 TAACGACACGTGC
M0211_1.02 8 GCACGTGT
M0212_1.02 10 GGCACGTGCC
M0214_1.02 9 AACATATGT
M0216_1.02 10 CGCAGCTGTG
M0217_1.02 10 ACCATATGGT
M0300_1.02 10 AATGACGTCA
M0305_1.02 9 GCCACGTGT
M0307_1.02 8 ATACGTTT
M0395_1.02 8 GTACTAAT
M0396_1.02 10 AACGGTAGCA
M0398_1.02 11 AGGAAGTGCAA
M0404_1.02 10 AAGGGGGGCA
M0405_1.02 10 TGGGCGTGGC
M0408_1.02 10 ATGTGCACAT
M0413_1.02 10 GTTGCGGGAC
M0415_1.02 8 ATAACGGT
M0422_1.02 10 CCGGGGGGTC
M0424_1.02 10 TTTGACAGCT
M0428_1.02 8 AGGAGCAC
M0431_1.02 9 ACGGTAGCA
M0432_1.02 9 CGCGCGCAC
M0433_1.02 10 ATCTAGAACA
M0436_1.02 10 TTGTTTATTG
M0437_1.02 9 TATATATAT
M0442_1.02 9 AATGCAGTG
M0443_1.02 10 TGGGCGTGGC
M0594_1.02 9 ATTTGAATT
M0603_1.02 7 TTAGCGG
M0607_1.02 9 GCGTAAATA
M0608_1.02 10 GGGGGCGTAA
M0609_1.02 10 CCCCGCTGCC
M0610_1.02 9 ATCGCGTTA
M0629_1.02 11 AATGTATCAAT
M0630_1.02 10 AATGTATCAA
M0632_1.02 10 AATGTATCAA
M0633_1.02 10 TAATGTATTA
M0635_1.02 13 AACATGTATAAAA
M0714_1.02 10 AACCGGAAGT
M0718_1.02 10 ATGTAAACAA
M0719_1.02 8 GTAAACAA
M0728_1.02 12 AATAAACAAACA
M0736_1.02 8 GTAAACAA
M0737_1.02 10 TATGTAAACA
M0747_1.02 10 AATGTAAACA
M0756_1.02 9 GTAAACAAA
M0887_1.02 9 CCTAATGAG
M0890_1.02 8 GTAATCAA
M0891_1.02 10 TTAATTGGTT
M0892_1.02 10 CCTAATTACC
M0893_1.02 10 GTTAATTAAC
M0894_1.02 8 TTAATTAG
M0896_1.02 8 TTAATTAG
M0897_1.02 10 TTTTATGGGC
M0898_1.02 8 TTACGTAA
M0900_1.02 8 TTAATTGG
M0901_1.02 8 CTTGTCAA
M0905_1.02 9 TTAATTACC
M0906_1.02 10 AATTAATTAG
M0931_1.02 9 TAATTAATT
M0937_1.02 7 TGATACC
M0942_1.02 8 TTGTAATT
M0943_1.02 8 GCTAATTA
M0949_1.02 7 TTAATGA
M0952_1.02 8 TGATACCC
M0958_1.02 7 CTAATTA
M0961_1.02 9 CTAATTGGT
M0969_1.02 9 CTAATCAGC
M0975_1.02 9 TAATTAATT
M0994_1.02 9 ATGATACCC
M0996_1.02 7 GAAATCA
M0999_1.02 9 ATTAATTAC
M1007_1.02 9 TTTATGACC
M1012_1.02 9 TTAATGACC
M1016_1.02 7 GTGATAC
M1018_1.02 7 TAATTAA
M1025_1.02 8 GCTAATTA
M1027_1.02 9 TTAATTACC
M1030_1.02 9 ACCACTTAA
M1034_1.02 7 GCAATTA
M1039_1.02 9 GCTAATTGG
M1049_1.02 10 ATGATACCCC
M1070_1.02 9 TTAATGACC
M1071_1.02 8 TTAATGAC
M1073_1.02 9 TTAATGACC
M1110_1.02 10 GGGCAATAGA
M1125_1.02 10 GCTAATTGGC
M1157_1.02 10 TTTTATGACC
M1163_1.02 9 ATTAATTAC
M1266_1.02 10 GACCGAAACC
M1281_1.02 9 CTTACGCAA
M1358_1.02 9 TAACCCTAG
M1359_1.02 10 TTTTGCGCCA
M1418_1.02 8 TGGTACCA
M1432_1.02 10 ATTGACCTCT
M1458_1.02 10 ACTGACCTCG
M1507_1.02 10 AATTTTGGCT
M1528_1.02 10 CCATGGCAAC
M1529_1.02 10 CCATAGCAAC
M1545_1.02 9 CGTACGTCA
M1581_1.02 10 TTTGCTGACT
M1582_1.02 11 ATATATAATAA
M1583_1.02 8 TTCATTGA
M1589_1.02 10 GCAGAACAAT
M1592_1.02 8 AAAACAAT
M1594_1.02 10 CATTGTTTTT
M1601_1.02 9 ATTGTTTTC
M1605_1.02 10 ATTCATCTTT
M1628_1.02 11 AGGTGTGAAGA
M1668_1.02 12 TCCAAACGAGAT
M1838_1.02 15 CATTGCCTCAGGGCA
M1841_1.02 15 GAACATTCTGTTCTT
M1863_1.02 8 GTAAACAT
M1868_1.02 14 ACAGATAAGAATCT
M1871_1.02 10 TGGGTGGGGC
M1882_1.02 21 AAAGTGAAAGTGAAAGTAAAA
M1884_1.02 15 AGCTAAAAATAGCAT
M1889_1.02 10 AAGCACATGG
M1890_1.02 18 AGAGTGCTGATTGGTCCA
M1906_1.02 11 GGGGGCGGGGC
M1915_1.02 20 GCAAGGCATTATGGGAAATC
M1917_1.02 11 GGTCACGTGGC
M1919_1.02 12 CAAGATGGCGGC
M1925_1.02 11 TATTGTGCAAT
M1926_1.02 9 CAGGTGAGG
M1927_1.02 8 GCCACGTG
M1928_1.02 11 GGGAATTTCCC
M1929_1.02 15 CATGTCTGGGCATGT
M1934_1.02 20 AGGTCAGGGTGACCTGGGCC
M1950_1.02 6 GTGGAT
M1955_1.02 11 TTTCCAGGAAA
M1963_1.02 14 GGGGCCGAGGCCTG
M1968_1.02 11 TCCCTGGGGAC
M1970_1.02 6 TGCCAA
M2065_1.02 15 AGGTCAGGGTGACCT
M2264_1.02 8 GCCATCTG
M2267_1.02 11 TTTTATGGCTT
M2268_1.02 11 TATTGCACAAT
M2270_1.02 11 TAATTTAATCA
M2273_1.02 11 GGGCGGGAAGG
M2275_1.02 13 GAACCAGGAAGTG
M2277_1.02 11 ACAGGAAGTGG
M2278_1.02 11 TGTGACTCATT
M2281_1.02 11 TCCAATCCACA
M2283_1.02 15 CAAAAGTAAACAAAG
M2286_1.02 15 TGGACTTTGGACTCT
M2287_1.02 13 GGCCATAAATCAC
M2289_1.02 13 AAGATGATGTCAT
M2292_1.02 11 GGTGACTCATC
M2296_1.02 15 CTGAGTCAGCAATTT
M2299_1.02 13 AGGGACAGCTGCA
M2301_1.02 15 AAATGGACCAATCAG
M2303_1.02 15 TGACCTCTGACCCCT
M2305_1.02 11 TGCGCAGGCGC
M2306_1.02 13 TTCATTTGCATAT
M2307_1.02 15 AGAAAGTGAAAGTGA
M2310_1.02 15 CAAACCACAAACCCC
M2313_1.02 10 CCATTGTTTT
M2314_1.02 15 GGGAGGGGGCGGGGC
M2319_1.02 14 TTCCTTTGATCTTT
M2321_1.02 20 AGACATGCCCAGACATGCCC
M2323_1.02 15 CAGATCTCGCGAGAG
M2385_1.02 11 AAGTAAACAAA
M2387_1.02 10 GTGGGGTGAT
M2388_1.02 10 ATGGGGTGAT
M2390_1.02 8 CAGGAAGG
M2391_1.02 10 GGGGCGGGGC
M2392_1.02 19 GTTGCCATGGCAACCGCGG
M4344_1.02 8 GGTTGCTA
M4427_1.02 21 GTGGCCACCAGGGGGCGCTGT
M4428_1.02 14 GGAACATTCTGTTC
M4438_1.02 15 AGGTCACGGTGACCT
M4444_1.02 14 AGGGGATTTCCCAG
M4451_1.02 11 GGTCACGTGAC
M4452_1.02 15 TCTCGATATGACTCA
M4453_1.02 15 AAGAGGAAGTGAAAC
M4454_1.02 15 AAATCTCGCGAGAAC
M4459_1.02 20 GTGCGGGGGCGGGGGGGGGG
M4461_1.02 21 GCCTTCTGGGAATTGTAGTTC
M4462_1.02 11 CGCCGGAAGTG
M4463_1.02 18 AATGTGGAAATGAGTCAG
M4467_1.02 15 ATGCCAAAAATAGCA
M4469_1.02 14 TCCATGGTGCTGAA
M4471_1.02 15 GCAGCCAAGCGTGAC
M4473_1.02 15 GCCGGCCAATCAGAG
M4476_1.02 15 TCACCTGTTGCTAGG
M4477_1.02 19 CCATGGCCATATAAGGCAA
M4478_1.02 20 CAGGTGATTTCCGGGAAATG
M4479_1.02 11 GCAGCAGCTGT
M4481_1.02 15 GGTCACGTGGCCCGG
M4484_1.02 15 CTGGGAATTGTAGTC
M4509_1.02 17 ATTTGCATAACAAAGGA
M4511_1.02 8 TGACCTCT
M4522_1.02 10 CCGGAAGTGG
M4525_1.02 15 AGCCTCAGGGCATGG
M4526_1.02 15 GGGGGGTGACTCATC
M4527_1.02 21 GGACTACAACTCCCAGCAGGC
M4532_1.02 10 CCACGTGCTC
M4536_1.02 15 GGGGAGGGCGCGCGG
M4537_1.02 15 GGCGGGAAATTTGAA
M4543_1.02 11 GGAACCACGTG
M4545_1.02 15 AGAAAGTGAAAGTGA
M4551_1.02 17 TTCATACTGGAGAGAAA
M4553_1.02 10 GGTCACGTGC
M4565_1.02 14 CAGGATGAGTCACC
M4567_1.02 15 GCAAAGTAAACAGAG
M4569_1.02 18 GTCCCGGGTTCGAATCCC
M4572_1.02 15 TGCTGACTCAGCAAA
M4600_1.02 11 GCAGATAAGGA
M4604_1.02 21 GGGGAGGAGGGAGGGGAGGAG
M4612_1.02 15 CCGCCAGGGGGCGCC
M4619_1.02 11 GGGTGACTCAT
M4623_1.02 15 CGGTGACTCATCCTT
M4629_1.02 17 CATGACTCAGCAATTTT
M4635_1.02 15 GAAAATGAAACTGAA
M4636_1.02 21 CTGCCCTCATCCAAGATGGCG
M4640_1.02 15 GGGCAGGGGTCTCGG
M4665_1.02 15 CAGATAAGAATCTGT
M4680_1.02 8 GTCACGTG
M4681_1.02 10 TGCTGAGTCA
M4692_1.02 10 ACTACAACTC
M4698_1.02 15 CTGGACTTTGGACTC
M4702_1.02 8 TGACCTTT
M4708_1.02 10 TATGCAAATA
M4840_1.02 11 AAATGAGCAAC
M4850_1.02 21 TGTTGTGTCCGTGCCATCTGG
M4930_1.02 11 AAATCGTGACT
M4971_1.02 10 GTAACAGCTG
M5116_1.02 9 ACCACCTGT
M5209_1.02 11 GTGGGCGTGGC
M5234_1.02 10 GGTCACGTAC
M5284_1.02 10 GCTAATTAGC
M5287_1.02 13 CTAATTAAATTAA
M5291_1.02 13 TTAATTTAATTAA
M5292_1.02 13 GGATGATGCAATA
M5293_1.02 14 CGATGACGTCATCG
M5294_1.02 10 GTTAAACGGT
M5300_1.02 17 TAATCGGTATTTAATTG
M5302_1.02 14 TGATGACGTCATCA
M5303_1.02 17 TGCTTTCTAGGAATTCA
M5304_1.02 10 ACCATATGGT
M5307_1.02 12 AAACATATGTTT
M5308_1.02 10 ACCATATGTT
M5310_1.02 8 TTAATTGG
M5320_1.02 15 CCCGCATACAACGAA
M5321_1.02 10 AACACGTGTT
M5322_1.02 8 TTTTTATT
M5323_1.02 14 TGATGACGTCATCG
M5325_1.02 14 TGATGACGTGGCAT
M5335_1.02 18 ATCGATAATTTTATCGAT
M5339_1.02 10 GATAATTAGG
M5342_1.02 8 GTAATTGG
M5343_1.02 8 ATAATTAC
M5344_1.02 8 GTAATTGG
M5345_1.02 10 GTTAATCCGC
M5346_1.02 10 GCTAATCCGT
M5348_1.02 13 CTAATCTAATTAA
M5349_1.02 13 CTAATTTAATCAA
M5363_1.02 12 TTTCCCGCCAAA
M5377_1.02 12 AACCCGGAAGTG
M5388_1.02 10 GCTAATTAGC
M5390_1.02 10 GCTAATTGGG
M5394_1.02 10 GTTAATTGGA
M5398_1.02 10 ACCGGAAGTG
M5414_1.02 10 GTTAATTGGT
M5420_1.02 10 ACCGGAAGTA
M5421_1.02 11 AACCGGAAATA
M5422_1.02 10 ACCGGAAGTG
M5425_1.02 15 CCGGAAGCGGAAGTG
M5427_1.02 10 GCTAATTACC
M5428_1.02 10 GCTAATTACC
M5430_1.02 10 ACCACCTGTT
M5435_1.02 14 TCGCTGTGTCATTC
M5445_1.02 14 AGTAAATATTTTTT
M5446_1.02 7 GTAAACA
M5460_1.02 7 GTAAACA
M5471_1.02 14 GTAAACATGTTTAC
M5480_1.02 10 GCTAATTAGT
M5481_1.02 10 GCTAATTGGT
M5487_1.02 10 TATGCGGGTA
M5490_1.02 16 GCTTCGTGGGGGGTCT
M5491_1.02 14 CTTCGCGGGGGGTC
M5493_1.02 8 GTACGTAA
M5497_1.02 17 AACCGGTTTAACCGGTT
M5500_1.02 10 GCTAATCCCC
M5501_1.02 10 CCTAATCCGC
M5502_1.02 10 TTTAATTAGG
M5503_1.02 10 TTTAATTAGT
M5504_1.02 12 TGGCACGTGCCG
M5506_1.02 12 TGGCACGTGCCA
M5509_1.02 10 GGCACGTGTC
M5512_1.02 9 GGTGGGCAT
M5517_1.02 10 ACTAGTTAAC
M5518_1.02 11 TTTTAATTGCT
M5519_1.02 11 TTTTAATTGGT
M5520_1.02 11 TGTTAATTGCT
M5530_1.02 12 TATAATCGTTTT
M5541_1.02 10 GTTAATTACT
M5542_1.02 10 GCTAATTAGT
M5543_1.02 10 TTTAATTAGT
M5544_1.02 10 TTTTTATGGG
M5547_1.02 11 GGTCGTAAAAT
M5551_1.02 9 TTTTATTAC
M5553_1.02 10 CCAATAAAAA
M5555_1.02 10 GTCGTAAAAA
M5557_1.02 9 GTAATAAAA
M5563_1.02 10 GCTAATTAGC
M5567_1.02 13 GAACGTTCTAGAA
M5568_1.02 15 TTCGAAACGTTCGAA
M5571_1.02 10 GACAGGTGTA
M5581_1.02 12 CATGTCATGTAA
M5582_1.02 12 CATGTCATGTAA
M5583_1.02 8 TTAAGTGC
M5584_1.02 13 TTAATCTAATTAA
M5587_1.02 9 ATGACTCAT
M5591_1.02 18 CAAAAAGGGGCGTGGCAT
M5592_1.02 14 AAGGGGGCGTGGCC
M5593_1.02 11 GGGGGCGTGGC
M5594_1.02 13 CTCGACCTAATTA
M5602_1.02 8 TTAATTGG
M5604_1.02 8 TTAATTAA
M5605_1.02 8 TTAATTAA
M5616_1.02 12 GCTATAAATAGC
M5621_1.02 8 CCTGTCAA
M5623_1.02 10 GCTAATTAAC
M5624_1.02 10 AGTAATTAAC
M5627_1.02 10 CACAGGTGTT
M5628_1.02 8 AGGTGTGA
M5631_1.02 10 GTTAATTAGA
M5632_1.02 10 ATCACGTGAT
M5634_1.02 10 ACCACGTGCC
M5635_1.02 10 TTTAATTACC
M5636_1.02 10 AACAGCTGTT
M5637_1.02 18 TAATTGGTTTTTAATTGC
M5643_1.02 12 ACCGTTAAACGG
M5652_1.02 10 GCCATATGGT
M5653_1.02 10 GACATATGTT
M5660_1.02 15 TTGGCACGGTGCCAA
M5662_1.02 15 TTGGCACAGTGCCAG
M5664_1.02 15 TTGGCACCGTGCCAA
M5672_1.02 10 GCTAATTAGC
M5689_1.02 11 AATTTGCTGAC
M5690_1.02 10 AACATATGTT
M5691_1.02 10 ACCATATGTT
M5693_1.02 10 ACCATATGTT
M5697_1.02 14 ATTATTGATTTTTT
M5702_1.02 17 TGCAGTCATGCGTGACG
M5704_1.02 10 TAATCGATTA
M5705_1.02 8 CTAATTAG
M5709_1.02 10 TAATCGATTA
M5711_1.02 17 TGCAGTCATGCGTGACG
M5714_1.02 11 TAATTTAATTA
M5715_1.02 11 TAATTTAATTA
M5717_1.02 9 CTTAATCCC
M5720_1.02 9 CTTAATCCC
M5722_1.02 12 TGACACCTGTCA
M5729_1.02 9 ATTTGCATA
M5735_1.02 13 AAATTAGCATAAT
M5738_1.02 9 ATTTGCATA
M5740_1.02 14 ATGAATAATTAATG
M5743_1.02 16 ATGCATAATTAATGAG
M5744_1.02 9 ATTTGCATA
M5746_1.02 10 ATAATGAGCT
M5750_1.02 13 GGGGGCCTTGAAA
M5753_1.02 12 CAAGACGCCTTA
M5771_1.02 10 GTTAATTGGC
M5772_1.02 8 TTAATTGG
M5777_1.02 16 CGTTGCCATGGCAACG
M5782_1.02 9 GGATAATCC
M5804_1.02 15 GAGCAACAGGTGGTT
M5805_1.02 13 ATGCAACAGGTGG
M5807_1.02 8 TTAATTGG
M5815_1.02 12 ACAATAACATTG
M5825_1.02 15 AACACTACCATTGTT
M5835_1.02 16 AACAATGTTCATTGTT
M5838_1.02 16 AACAATGTGCAGTGTT
M5856_1.02 12 AGTGGGCGTGGC
M5857_1.02 11 ACCCGGATGTA
M5865_1.02 14 AAAAAGAGGAAGTA
M5873_1.02 10 AGGTGTGAAA
M5875_1.02 20 AGGTGTGAAAAAAGGTGTGA
M5880_1.02 19 AGGTGTGAAATTCACACCT
M5882_1.02 20 TTTCACACCTAGGTGTGAAA
M5883_1.02 16 TCACACCTTCACACCT
M5889_1.02 16 GGTGTGAATTCACACC
M5896_1.02 8 AGGTGTGA
M5903_1.02 12 AAAGATCAAAGG
M5932_1.02 10 GTCACGTGAT
M5934_1.02 12 TGACAGCTGTCA
M5935_1.02 12 TGACAGCTGTCA
M5941_1.02 13 CTAATTTAATTAG
M5944_1.02 8 CTAATTAC
M5945_1.02 8 CTAATTAC
M5949_1.02 8 CTAATTAT
M5955_1.02 11 TAATGGCGGAC
M5958_1.02 13 TATGTCGCGATAG
M5959_1.02 17 TTTCGCCTGGCACGTCA
M5962_1.02 12 TTCGGTGGTCGC
M5965_1.02 15 GCACAGCGGGGGGTC
M5967_1.02 19 ATGTTAAATGTAGATTAAG
M5970_1.02 17 GTCGTGTTGTGGGAAAG
M5971_1.02 14 TCGAGGCTAGACCA
M5972_1.02 17 GAGTATTATGGGATGGA
M5973_1.02 18 AGGTGTTCTGTTAACACT
M5974_1.02 12 GGGTTCGAGGGT
M5976_1.02 17 TTCGTGGCATTTTTCTA
M5977_1.02 10 GTGGGGGGGG
M5979_1.02 12 TGTGGGAAAAGC
M5980_1.02 10 AGGTAGGTAC
M5981_1.02 15 TTTTCAGTGTGTGCA
M5998_1.02 12 GGTGACGTCATT
M6037_1.02 12 TTTGTCATGTAG
M6111_1.02 13 AGAAAGGGTTAAT
M6114_1.02 10 AAAGCAAACA
M6115_1.02 15 CATGTCTGGGCATGT
M6119_1.02 15 AAAAAGAGGAAGTGG
M6123_1.02 15 GGGGTGGGGGAGGGG
M6131_1.02 21 CCGGTTCAAACCGGTTCTGGC
M6139_1.02 9 GCACGCAAC
M6140_1.02 18 ATTGGTTTTATTGGTTAA
M6141_1.02 12 TAATTCAATTAT
M6144_1.02 10 GCCCCCGGGC
M6146_1.02 14 ACGCGCCTCGGGCG
M6147_1.02 22 TTTAATTTGATTTCGATTAATT
M6149_1.02 13 TGTTAGTATTGTG
M6150_1.02 12 GCCTCCCACGCC
M6151_1.02 8 TCACGTGC
M6152_1.02 10 GTGACGTCAC
M6154_1.02 12 TAAGGAAGAAGG
M6155_1.02 12 GTGGTGACGTGG
M6157_1.02 10 TCATTAATTG
M6159_1.02 16 TTCCTAGAAAGCTTTT
M6161_1.02 20 ACCGGGTCACGTGCAGAAGG
M6162_1.02 14 GGGTCACGTGTCCA
M6163_1.02 12 TTTGTTGTTTTC
M6164_1.02 25 ACATAGTGACACCTAGGTGTGAAAT
M6166_1.02 15 ATTATGTTAAATCAC
M6167_1.02 8 ACATAAAT
M6171_1.02 11 AATTGTGCAAT
M6172_1.02 12 AAGATTGCGCAA
M6173_1.02 13 CAGATTGCAAAAT
M6174_1.02 11 AGCCAATCAGC
M6176_1.02 12 TGACCTTTGACC
M6180_1.02 9 GTGACGTCA
M6181_1.02 11 CACTGACGTCA
M6182_1.02 8 CTAATCCC
M6184_1.02 14 AGGGGGATCGATGG
M6185_1.02 7 CGTTGGC
M6186_1.02 11 TGTTACATAAC
M6187_1.02 13 GGGGATTGCATTT
M6188_1.02 8 ATAATTAT
M6189_1.02 10 GATAATTACA
M6191_1.02 10 GGCGCGAAAC
M6192_1.02 10 CGCGCGAAAC
M6194_1.02 10 CGCGCCAAAC
M6196_1.02 13 TAAGGCGCGAAAA
M6197_1.02 9 CGTGACGTC
M6199_1.02 11 GGCGTGGGCGG
M6200_1.02 11 AGAGTGGGTGT
M6201_1.02 11 GGCGGCAGGGC
M6204_1.02 15 TAGCAGGAAGTGAGT
M6205_1.02 14 GGCAAACAGGAAAT
M6206_1.02 11 ATAAGGAAGTA
M6207_1.02 9 ACCGGAAGT
M6208_1.02 12 CCCAGGAAGTGC
M6210_1.02 13 TGCCCACGTGGTG
M6211_1.02 14 CGGGGATACGAAAT
M6212_1.02 13 CCCACGTACGCAC
M6213_1.02 11 ACCGGAAATCC
M6215_1.02 9 TGACCTTGA
M6216_1.02 9 TGACCTTGA
M6221_1.02 11 GCGGGAAGTGG
M6222_1.02 8 CAGGAAGT
M6223_1.02 13 GACAGGAAGTAAC
M6224_1.02 17 GCCACAGGAAGTAACAC
M6225_1.02 16 AAGATAAGATAAGATA
M6226_1.02 10 CAGGAAATAA
M6228_1.02 10 CTGACTCATC
M6234_1.02 13 GCAAAGCAAACAA
M6235_1.02 15 CTTAAGTAAACAATG
M6236_1.02 15 TCTGGCAAAACAAAC
M6237_1.02 9 AAACAAACA
M6238_1.02 11 AAAATAAACAT
M6239_1.02 11 AAAAGTAAACA
M6240_1.02 12 AACCAATCAGAG
M6241_1.02 10 TAAATAAACA
M6242_1.02 13 TAAACAAAAACAA
M6244_1.02 13 AAAAACAAACAAC
M6245_1.02 16 AAAAAGTAAACAAACC
M6246_1.02 13 AGGTAAACAAACA
M6247_1.02 9 AATAAACAA
M6249_1.02 9 AAACAAATT
M6250_1.02 12 AAATAAACAATT
M6251_1.02 12 TTGTGTTTTTTT
M6256_1.02 9 ACAGATAAC
M6257_1.02 17 TAAGAGATAACTTAGAT
M6258_1.02 7 AAGATAA
M6259_1.02 14 CACATGCGGGTATT
M6262_1.02 11 TGCAGTGATTT
M6263_1.02 10 GCTGTGATTT
M6264_1.02 11 CTGGGTGGTCT
M6265_1.02 11 GTGGGTGGTCT
M6266_1.02 11 TTGGGTGGTCC
M6267_1.02 10 GTGGGGGGTA
M6268_1.02 12 AATGCCAGACGC
M6269_1.02 9 ATTCATTGA
M6270_1.02 20 AGGGACGCAGCTGCTCCCCA
M6271_1.02 13 GGGCTCGTGGCGG
M6272_1.02 16 AGGCCACGTGCCGGAT
M6273_1.02 17 GGGGGCACGTGGCATTA
M6274_1.02 9 GGGTTGCCC
M6275_1.02 12 GCGTACGTGCGG
M6276_1.02 16 GCGCTAGCGGACGTTA
M6277_1.02 13 CTGTTACGTAATC
M6278_1.02 12 TAGGGCTGCAAA
M6279_1.02 7 AAAATAC
M6280_1.02 15 AATAATCGCGAATAT
M6281_1.02 15 GGTTAATTATTAACC
M6282_1.02 14 GTTAATCATTAACC
M6285_1.02 14 TTTATTGATTTTTT
M6287_1.02 14 AGAATGTTCTAGAA
M6289_1.02 12 TCATAAATTATC
M6290_1.02 11 CCAATAAAACC
M6291_1.02 10 CATCCATCAA
M6292_1.02 10 CATTAATCAA
M6293_1.02 15 TCCAATCTATTGATT
M6295_1.02 10 CCATCCATCA
M6296_1.02 13 TGCATCAATCATT
M6297_1.02 10 CATTAATCAA
M6298_1.02 11 GCATTAATCAA
M6299_1.02 15 AAAGTAATAAATCAT
M6300_1.02 14 GGGCATCAATCAAA
M6301_1.02 10 AATTAAAGCA
M6302_1.02 11 TCCCTAATAAA
M6303_1.02 8 TTAATTGA
M6304_1.02 10 TAATTAAATT
M6306_1.02 12 TGTCAGGGGGCA
M6308_1.02 14 GGAAAGTGAAAGCA
M6309_1.02 17 GGAAAGCGAAACTGAAA
M6311_1.02 20 TAAAGGAAAGCCAAAAGTGA
M6312_1.02 10 GAAAGTGAAA
M6313_1.02 15 GAGAAAGTGAAACTG
M6314_1.02 12 GAAAGCGAAACT
M6315_1.02 7 GTTAATG
M6316_1.02 9 CCAGGTGCA
M6321_1.02 17 GGCGGGGAGGTGGGGGC
M6322_1.02 11 CAGGGTGTGGC
M6323_1.02 15 TGCCTGGGTGTGGCT
M6324_1.02 10 TGGGCGGGGC
M6325_1.02 8 GGGGGCGG
M6326_1.02 9 CAGGGGGTG
M6327_1.02 7 CTTTGAT
M6328_1.02 13 CACTTTTAATTAG
M6329_1.02 13 AAAATTAATTAAT
M6330_1.02 21 GTGCTGACCCCGCAGCCTTCG
M6331_1.02 9 TGCTGACGG
M6332_1.02 8 TTGCTGAC
M6333_1.02 7 CATGACT
M6336_1.02 17 GGGGGGGGGAGGGAGGG
M6337_1.02 11 GGGGCCGGAGG
M6338_1.02 17 TACAACAACCTGTTCTT
M6339_1.02 7 CTCCGGG
M6342_1.02 12 GCTAAAAATAGC
M6343_1.02 13 CATAAAACTGTCA
M6344_1.02 13 TGACAGCTGTCAA
M6345_1.02 10 ATCACATGAC
M6346_1.02 19 CCACGGCGGTGTCACATGC
M6347_1.02 7 TAATTGT
M6348_1.02 17 AGTGCCGTGTGCAAAAC
M6349_1.02 10 TCAACCTGCA
M6350_1.02 7 CAGTTGG
M6352_1.02 8 CCACGTGG
M6353_1.02 7 GCAGCTG
M6354_1.02 9 GACAGCTGC
M6355_1.02 13 TGACAGCTGCTGC
M6356_1.02 9 GGTGGGGAA
M6357_1.02 8 TTTAATGG
M6358_1.02 12 CGGCAGATGGCC
M6359_1.02 7 AATGACT
M6360_1.02 12 CATGACTCAGCA
M6361_1.02 13 ATGGAAATTTCCA
M6363_1.02 9 AATTTTCCA
M6364_1.02 9 AGTTTTCCA
M6365_1.02 10 AAATTTTCCT
M6366_1.02 15 CATGGATTTTTCCAC
M6368_1.02 14 ATGCATTACATAAC
M6370_1.02 11 GGAATCTCCCT
M6373_1.02 14 CAGCCAATCAGCGC
M6374_1.02 10 CTCAAGTGCT
M6375_1.02 12 AAACCACTTAAA
M6376_1.02 7 TCAAGTG
M6377_1.02 9 TTCAAGGAC
M6378_1.02 13 AATAAGTATATAA
M6379_1.02 11 AGTTAAGTGGA
M6380_1.02 9 CTAATTGGT
M6381_1.02 10 TCTCCCACGC
M6382_1.02 14 TTTGACCTACTTTT
M6383_1.02 19 CGTTGACCTTTGACCTTTA
M6384_1.02 14 AGGTCATTGACCCT
M6385_1.02 19 CTGAACTTTTTTGACCTCA
M6387_1.02 18 CTGAACTTTCCTGACCCC
M6389_1.02 13 CTGACCTCTGGCC
M6391_1.02 14 TGACTTTTGACTTT
M6392_1.02 18 TCAATTGAACTTTGTCCT
M6393_1.02 9 GTGACCTTT
M6394_1.02 9 GTGACCTTT
M6395_1.02 10 CTGACCTTTG
M6396_1.02 10 TGGCCTTGAA
M6397_1.02 13 TGACCTTGAACTT
M6399_1.02 21 GTCTTGTTATTGATTTTTTTT
M6400_1.02 8 CTAATCCT
M6401_1.02 15 CTTTAATCCCTTAAC
M6402_1.02 9 TGTAACTGT
M6406_1.02 18 GTTCAGTCATGCGTGACA
M6410_1.02 11 TCAAGCGTGAA
M6411_1.02 14 GTCACTGAAGCGGG
M6412_1.02 15 CCCATCAATCAAATT
M6413_1.02 15 CCATCAATCAATTTA
M6415_1.02 9 CTAATTACC
M6416_1.02 11 TCTGTGGTTTG
M6417_1.02 13 ATATATTCATGAG
M6418_1.02 10 TTTAATCCCA
M6419_1.02 13 CATCAATCAAGCT
M6420_1.02 17 GGGGGCATCAGGAGGGG
M6422_1.02 10 CGGGGGGCCC
M6423_1.02 9 ATTTGCATA
M6425_1.02 14 TTTGCATTACAATG
M6426_1.02 10 CATAAATAAT
M6427_1.02 13 CAGCTCATTAATA
M6429_1.02 13 CATAATTTATGCA
M6430_1.02 7 TGACCTT
M6432_1.02 14 TGACCTTTGTCCTA
M6433_1.02 18 GTGACCTTTGACCTACTT
M6436_1.02 13 TACAGACTGTTCT
M6438_1.02 15 GAGTAATTAATATAA
M6439_1.02 7 TAATCTG
M6440_1.02 7 TTAATTG
M6441_1.02 21 GGACAGCTGTTCTGTTTCCTG
M6442_1.02 17 CCCTGCCCCCCCCTTCC
M6443_1.02 7 TGACCTC
M6445_1.02 11 GCCCTGACCTC
M6446_1.02 20 GTGACCTCTGGGTGACCCCC
M6448_1.02 12 GGGGGATTTCCC
M6449_1.02 12 TGGGGATTTCCC
M6451_1.02 12 GTTGCTAGGGAA
M6453_1.02 14 TTACCATGGCAACC
M6454_1.02 12 TGACCTAGTTTT
M6455_1.02 13 CTGACCTACTTTT
M6456_1.02 22 GGGGGGGGGGGTGGTTTGGGGT
M6457_1.02 10 TAACCACAAA
M6459_1.02 14 AACCACAAACCCCA
M6461_1.02 10 TGTGACCTCA
M6462_1.02 13 GTGACCTTTGACC
M6463_1.02 12 AGCCTGTCTGCC
M6464_1.02 11 GTGTCCGTCTG
M6465_1.02 10 GTGTCTGGCC
M6466_1.02 9 TGTCTGGCC
M6468_1.02 8 CCAGGTGG
M6469_1.02 7 TCAGGTG
M6470_1.02 7 TCTTTGT
M6471_1.02 8 CATTGTTC
M6472_1.02 7 CATTGTT
M6473_1.02 18 CAACAATCTTCATTGTCC
M6474_1.02 19 GGAAAAGAACAATGGGTTC
M6475_1.02 16 ATTTGCATAACAATGG
M6476_1.02 12 GAGAACAAAGCG
M6477_1.02 8 TAACAATA
M6478_1.02 11 AGAACAATGGG
M6482_1.02 20 GGGGGGGGGCGGGGCCGGGG
M6483_1.02 24 GGGGCCAGGGGGGGGGCGGGGCCG
M6485_1.02 12 AAAAAGAGGAAG
M6486_1.02 16 CGGCTGTTACCCTGGG
M6490_1.02 9 AAAACAAAA
M6491_1.02 12 TTTCCAGGAATT
M6492_1.02 13 TTTTCTGGGAATT
M6496_1.02 13 TTTCCCAGAAAAG
M6497_1.02 13 TTCCCAGGAATTT
M6498_1.02 9 TGACCTTGA
M6499_1.02 9 CGTGGGAAA
M6500_1.02 12 GACCATCTGTTC
M6503_1.02 25 GTCGCTTTTCACACCTCTGATGGCA
M6504_1.02 24 AGGTAGAGAATTAGGTGATAAAAA
M6505_1.02 8 AGGTGTGA
M6506_1.02 12 GCGCTTTGTTCT
M6507_1.02 14 CACATTCCTGCGCC
M6508_1.02 15 GATATTTCTGCTCTA
M6509_1.02 12 AAAAATAGCTCT
M6510_1.02 14 TGTTTATGTAAATG
M6513_1.02 11 GCCAGCTGCGG
M6514_1.02 16 GCCTGAACTGGCCAGA
M6515_1.02 14 AAATGGCGGGAAAC
M6516_1.02 11 GACCATCTGGT
M6517_1.02 10 GGTCATGTGG
M6518_1.02 9 GGTCACGTG
M6519_1.02 16 CAGGTGACACCTGACA
M6521_1.02 10 CTGACCTGAA
M6523_1.02 17 TGACCTGACCTGACCTC
M6525_1.02 11 CGCCAAGGAGC
M6527_1.02 10 ACCCAGGTGG
M6529_1.02 7 TTTCTGG
M6532_1.02 7 TGACCTC
M6534_1.02 11 TTAGCTAATTA
M6535_1.02 13 GCGGGGGCGGGGG
M6536_1.02 12 GACGTGTCATTA
M6537_1.02 11 GGGGATTGGCC
M6539_1.02 22 CGGAGAGGGGGAGGGGGGGGGC
M6540_1.02 15 CAATAGCGGTGGTGG
M6542_1.02 13 AGATGATAGAGCC
M6544_1.02 12 GGGGATTTCCCA
M6545_1.02 14 GGTAGGGAAACCCC
M6546_1.02 11 ATTAATAATTA
M6547_1.02 19 GGGGGCCCCAGGCCTCGGC
M6548_1.02 9 GGGGTGGTC
M6549_1.02 9 GGGGTGGTC
M6550_1.02 9 TGGGTGGTC
M6552_1.02 15 GGGGTGGGGGAGGGG
M6553_1.02 12 GAGGGGGGCGGA
M6554_1.02 14 TCCAGATGTTTCGG
M6555_1.02 9 CGATAATGA
M6556_1.02 24 GGGCAACAAATCCCTGCGCCCCGT
M6557_1.02 12 GGAAAAAATCGG
M6558_1.02 15 GCACCCTTGGGTGCC
M6559_1.02 16 CCCACGGTTACTGCCG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.255 C 0.245 G 0.245 T 0.255


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
M4427_1.02 CTCF chr8 + 89984289 89984309 7.16e-10 0.000364 ACTGCCACCAGGGGGCGCCGC
M4427_1.02 CTCF chr14 + 103105104 103105124 1.28e-09 0.000364 GTGGCCAGCAGGGGGCGCGCG
M4427_1.02 CTCF chr15 + 74127695 74127715 6.56e-08 0.0111 GCTTCCAGCAGGGGGCGCGCG
M4427_1.02 CTCF chr1 + 116139202 116139222 7.86e-08 0.0111 CTTGCCAGCAGAGGGCAGCAA
M4427_1.02 CTCF chr22 - 32519029 32519049 1.56e-07 0.0177 TTGGCCTGCAGATGGCAGCCT
M4427_1.02 CTCF chr1 + 16440610 16440630 3.11e-07 0.0294 GTTTCCAGCAGAGGGCGCACA
M4427_1.02 CTCF chr16 - 4585613 4585633 4.92e-07 0.0378 CCAACCAGCAGGTGGCAGAAT
M4427_1.02 CTCF chr19 + 38544548 38544568 5.7e-07 0.0378 ttttccagcagatggcagtaa
M4427_1.02 CTCF chr2 + 121975202 121975222 6.29e-07 0.0378 gcttccagcagatggcagtaa
M4427_1.02 CTCF chr3 + 9932951 9932971 6.86e-07 0.0378 GCGGCCGCCAGGGGCCGCGCG
M4427_1.02 CTCF chr7 - 12686812 12686832 7.33e-07 0.0378 CCGGCCTGTAGGGGGCGCGCA
M4427_1.02 CTCF chr3 - 23644246 23644266 9.87e-07 0.0433 TTGGCCTGCAGATGGCAACCC
M4427_1.02 CTCF chr12 + 103965995 103966015 1.03e-06 0.0433 GTGCCCGGCAGGTGGAGCCGC
M4427_1.02 CTCF chr10 + 12428901 12428921 1.07e-06 0.0433 atacccagaagagggcgctca
M4427_1.02 CTCF chr17 + 16386804 16386824 1.32e-06 0.0485 GTCACCACCAGGTGTCGCGAC
M4427_1.02 CTCF chr21 - 33495866 33495886 1.39e-06 0.0485 TTGGCCGGCAGATGGCTGCCT
M4427_1.02 CTCF chr17 + 64777015 64777035 1.45e-06 0.0485 CTGGCCACAAGGCGGCGGGCT
M4427_1.02 CTCF chr20 - 35947601 35947621 1.58e-06 0.0497 TTGAGCAGCAGAGGGCGATCT
M4427_1.02 CTCF chr6 - 135184026 135184046 1.78e-06 0.053 GCCGCCCGCAGGGGGCAGCCA
M4427_1.02 CTCF chr1 + 182910372 182910392 2.3e-06 0.0652 caggccaccaggtggtagggt
M4427_1.02 CTCF chr19 - 17522408 17522428 2.9e-06 0.0785 AGAGCCTCCAGAGGGAACCAG
M4427_1.02 CTCF chr10 + 69696304 69696324 3.15e-06 0.0812 gcatccggcaggtgtcactgt
M4427_1.02 CTCF chr11 - 22829850 22829870 3.52e-06 0.0856 CGAGCCAGTGGAGGGCGGTGG
M4427_1.02 CTCF chr19 + 36916456 36916476 3.62e-06 0.0856 GTTTCCGGCAGGTGACGCTGC
M4427_1.02 CTCF chr10 + 92087918 92087938 3.91e-06 0.0886 TTAGCCACATGGTGGCACGGT
M4427_1.02 CTCF chr17 + 64777181 64777201 5.56e-06 0.121 gcttaCACCAGAGGACGCTGG
M4427_1.02 CTCF chr5 + 39217953 39217973 6.92e-06 0.145 TAGACCACTAGATGTCAGTGT
M4427_1.02 CTCF chr14 - 105532972 105532992 7.91e-06 0.16 TAGGCCACGAGAGGGAGCAGA
M4427_1.02 CTCF chr5 - 134570964 134570984 8.64e-06 0.164 CCATCCAGCTGGTGGCACACG
M4427_1.02 CTCF chr15 - 74127652 74127672 9e-06 0.164 GTCAACGGCAGAGGGTGCTGG
M4427_1.02 CTCF chr4 - 3778308 3778328 9.15e-06 0.164 CCTGCCAGGAGGTGGCTGCCC
M4427_1.02 CTCF chr12 - 131870191 131870211 9.23e-06 0.164 GAACCCAGGAGATGGCAGTGG
M4427_1.02 CTCF chr6 + 20212765 20212785 9.82e-06 0.169 CCTTCCACTAGAGAGCACCAC
M4427_1.02 CTCF chr21 - 31918591 31918611 1.02e-05 0.169 GCAGCCACCAGGGGCTGGGAG
M4427_1.02 CTCF chr1 + 20271654 20271674 1.08e-05 0.169 tctcccactagatggtgcaac
M4427_1.02 CTCF chr1 + 116139269 116139289 1.09e-05 0.169 GAGCCCAGCAGGTGTCACACT
M4427_1.02 CTCF chr11 + 64843062 64843082 1.11e-05 0.169 CCCGCCAGAAGAGGGCCGAAG
M4427_1.02 CTCF chr7 - 148942029 148942049 1.13e-05 0.169 TGAGCCACCAGGAGGTGGAGG
M4427_1.02 CTCF chr1 + 20486783 20486803 1.18e-05 0.172 GCCTCCAGGAGGGGGAGGGGG
M4427_1.02 CTCF chr3 + 47043348 47043368 1.23e-05 0.174 actgacaccagaggacactca
M4427_1.02 CTCF chr19 - 40539322 40539342 1.3e-05 0.18 CTATCCACCAGGGGGTGAGCA
M4427_1.02 CTCF chr10 + 43397203 43397223 1.46e-05 0.197 TCGGCCCCGAGGAGGCGCGGG
M4427_1.02 CTCF chr9 - 88741538 88741558 1.61e-05 0.209 AACCACACAAGGGGGCGCTAA
M4427_1.02 CTCF chr5 - 1951064 1951084 1.64e-05 0.209 ACCCACAGTAGAGGGCACACG
M4427_1.02 CTCF chr14 + 72691807 72691827 1.66e-05 0.209 gcggacaggagaaggcagcat
M4427_1.02 CTCF chr3 - 186173016 186173036 1.76e-05 0.216 GAGGCAGCCAGAGGGCAGCCA
M4427_1.02 CTCF chr11 - 59106382 59106402 1.79e-05 0.216 CCAGCCTGGAGGAGGCAGTGG
M4427_1.02 CTCF chr10 + 8246756 8246776 1.85e-05 0.216 ctggcttgcagatggcagccc
M4427_1.02 CTCF chr16 + 2459570 2459590 1.89e-05 0.216 TGCCCCACCAGGGGCCACCTC
M4427_1.02 CTCF chr5 - 14546645 14546665 1.92e-05 0.216 TGGGCTTGCAGGTGGCAGCCT
M4427_1.02 CTCF chr6 + 20212647 20212667 1.95e-05 0.216 AGCGACGCCAGCGGGCGCCGC
M4427_1.02 CTCF chr1 - 10836197 10836217 2.02e-05 0.216 GCCTGCTCTAGGTGGCAGTGG
M4427_1.02 CTCF chr19 + 40691392 40691412 2.02e-05 0.216 CCCGGCAACAGATGGCACAGG
M4427_1.02 CTCF chr14 - 104820885 104820905 2.08e-05 0.218 GAAGCCGCCAGTGGGAGCTGC
M4427_1.02 CTCF chr17 + 73609350 73609370 2.21e-05 0.227 tggaccaggaggaggagccag
M4427_1.02 CTCF chr7 - 148942026 148942046 2.24e-05 0.227 GCCACCAGGAGGTGGAGGTTT
M4427_1.02 CTCF chr12 - 70604831 70604851 2.35e-05 0.233 TTGGCCTGCAAATGGCACCTT
M4427_1.02 CTCF chr17 + 68588591 68588611 2.42e-05 0.233 ttggctagcagatggctgcct
M4427_1.02 CTCF chr19 + 35947574 35947594 2.44e-05 0.233 GGGGGAGCCAGAGGGCACTGT
M4427_1.02 CTCF chr15 - 72801160 72801180 2.55e-05 0.233 ATAGCCAGTAAGTGGCAGAAT
M4427_1.02 CTCF chr5 - 1951122 1951142 2.57e-05 0.233 ACGCACAGCAGACGGCGCACG
M4427_1.02 CTCF chr5 - 1951140 1951160 2.57e-05 0.233 ACGCACAGCAGACGGCGCACG
M4427_1.02 CTCF chr9 - 129446041 129446061 2.59e-05 0.233 GAGGCCACCTGAGGACACAGG
M4427_1.02 CTCF chr2 - 192195209 192195229 2.89e-05 0.252 GCCTTCGGTAGGGGGCGTCCT
M4427_1.02 CTCF chr10 + 43397121 43397141 2.89e-05 0.252 GGGACCTggggggggcggccg
M4427_1.02 CTCF chr9 + 136410657 136410677 2.98e-05 0.252 ggagacgcaagATGGCGGCTG
M4427_1.02 CTCF chr21 - 46052676 46052696 3.07e-05 0.252 TTGAACGCGAGAGGGTGGCCT
M4427_1.02 CTCF chr16 + 3045456 3045476 3.09e-05 0.252 ctgcccaggaggaggcatccg
M4427_1.02 CTCF chrX + 47991518 47991538 3.09e-05 0.252 AAAACCACGAGGTGGCAAACT
M4427_1.02 CTCF chr17 - 41547474 41547494 3.14e-05 0.252 GTGGCCAGGGGAGGGCTGCCC
M4427_1.02 CTCF chr22 + 48944320 48944340 3.18e-05 0.252 gcggcctccaggggtggacgg
M4427_1.02 CTCF chr9 - 88741403 88741423 3.21e-05 0.252 TTGCCTTGCAGGTGGCAGTCT
M4427_1.02 CTCF chr6 + 149078676 149078696 3.24e-05 0.252 tgggcttgcagagggcacctt
M4427_1.02 CTCF chr1 - 156591895 156591915 3.28e-05 0.252 GTCCCCACCAGGTGGGTCCCG
M4427_1.02 CTCF chr19 + 35947564 35947584 3.38e-05 0.254 GCTCCCATGAGGGGGAGCCAG
M4427_1.02 CTCF chr19 - 42268523 42268543 3.44e-05 0.254 AGCGGCACGAGGGGGAGGTGC
M4427_1.02 CTCF chr8 - 89984287 89984307 3.48e-05 0.254 GGCGCCCCCTGGTGGCAGTCC
M4427_1.02 CTCF chr22 + 35651247 35651267 3.49e-05 0.254 agtgccagtagggcgcacttc
M4427_1.02 CTCF chr19 - 40691454 40691474 3.57e-05 0.256 GCGGCCTCCAGGTGCAGATGG
M4427_1.02 CTCF chr22 - 23242597 23242617 3.61e-05 0.256 TCAACCAGCAGGGGCAGGGAG
M4427_1.02 CTCF chr18 + 79069301 79069321 3.76e-05 0.264 AAGGCCCGCAGGCGGCGCCTC
M4427_1.02 CTCF chr2 + 121975274 121975294 3.95e-05 0.266 AGTGCCTGTAGGGTGCACTCT
M4427_1.02 CTCF chr6 - 118644584 118644604 3.98e-05 0.266 TTAGTGGGCAGAGGGCGGTGG
M4427_1.02 CTCF chrX + 20149057 20149077 4.02e-05 0.266 gaggcagcaagagggcggcca
M4427_1.02 CTCF chr12 + 121672628 121672648 4.02e-05 0.266 GGGCCCGGCCGGGGTCGCTAT
M4427_1.02 CTCF chr10 - 15626990 15627010 4.03e-05 0.266 GTGTCCAGTATAGGGAACCAC
M4427_1.02 CTCF chr3 - 39105230 39105250 4.09e-05 0.266 GGTTTCTGCAGGGGGAGCCGT
M4427_1.02 CTCF chr1 + 16440571 16440591 4.2e-05 0.266 GAAGCCTCCGGAGGTCGCCCG
M4427_1.02 CTCF chr8 + 142136686 142136706 4.22e-05 0.266 AGAGCCCCCAGAGGGAACTTC
M4427_1.02 CTCF chr6 - 20212658 20212678 4.28e-05 0.266 AGGGCCAGGCGGCGGCGCCCG
M4427_1.02 CTCF chr7 + 100335716 100335736 4.31e-05 0.266 GGGGCCTCCACGAGGCGGCCT
M4427_1.02 CTCF chr9 - 135379848 135379868 4.36e-05 0.266 CTGCCCACTTGGTGGCAGGTG
M4427_1.02 CTCF chr10 + 17006084 17006104 4.37e-05 0.266 ccagcctccaggagacagcac
M4427_1.02 CTCF chr19 - 36489447 36489467 4.42e-05 0.266 AAACCCGGGAGAGGGCGGGGC
M4427_1.02 CTCF chr1 + 156592096 156592116 4.45e-05 0.266 TCAGCCAGGAGGAGGCCCAGG
M4427_1.02 CTCF chr1 - 24887053 24887073 4.5e-05 0.266 GCAACCACCAGGAGCCAGGAG
M4427_1.02 CTCF chr4 + 102760664 102760684 4.65e-05 0.272 AGCACCAGAAGAAGGCGGGCG
M4427_1.02 CTCF chr14 - 20343741 20343761 4.81e-05 0.273 GGTCACAGTAGGTGGCATCGT
M4427_1.02 CTCF chr1 - 20486918 20486938 4.82e-05 0.273 CCCGAGGGCAGAGGGCGGCAG
M4427_1.02 CTCF chr19 + 36916482 36916502 4.84e-05 0.273 CCCCGCAGCAGGGGGCGAGCA
M4427_1.02 CTCF chr5 + 178227167 178227187 4.89e-05 0.273 gaggccgtcagggggcccctc
M4427_1.02 CTCF chr19 + 46000004 46000024 4.93e-05 0.273 TCAGCCACCAGGATGAGCCAC
M4427_1.02 CTCF chr11 - 22829980 22830000 5e-05 0.273 AATGCCTTAAGGGGGCGCAGC
M4427_1.02 CTCF chr2 - 237958552 237958572 5.02e-05 0.273 ATTCCCAGTGGATGGCGGCTG
M4427_1.02 CTCF chr10 + 92087840 92087860 5.05e-05 0.273 TGTACTTCCAGGTGGCAGCAG
M4427_1.02 CTCF chr9 + 128448826 128448846 5.2e-05 0.277 cagaacaccagatggaggttg
M4427_1.02 CTCF chr5 + 148849218 148849238 5.24e-05 0.277 ttgacttgcaggtggcaacct
M4427_1.02 CTCF chr7 + 12686844 12686864 5.32e-05 0.277 cgcgcgggcagggggcgggGA
M4427_1.02 CTCF chr13 + 98116598 98116618 5.33e-05 0.277 ggagccttcagagggagccca
M4427_1.02 CTCF chr16 - 85683538 85683558 5.37e-05 0.277 AGGCCCAGGAGAGGGAGTTGC
M4427_1.02 CTCF chr1 + 10836007 10836027 5.53e-05 0.282 GCGGCCTCCAGGGGCGGGAGG
M4427_1.02 CTCF chr17 + 81455529 81455549 5.57e-05 0.282 GCCGACAGCAGGAGGAGGAGG
M4427_1.02 CTCF chr12 - 108561472 108561492 5.73e-05 0.286 ACCTTCTCAAGATGGCGCCAA
M4427_1.02 CTCF chr19 + 43798926 43798946 5.75e-05 0.286 CTGGCCCGCAGGAGGCCCGGT
M4427_1.02 CTCF chr6 - 110435365 110435385 5.81e-05 0.287 GTGGTCTTCAGGTGGTGCCCT
M4427_1.02 CTCF chr3 + 9932941 9932961 6.15e-05 0.298 TTCTCCGGCAGCGGCCGCCAG
M4427_1.02 CTCF chr6 - 163753954 163753974 6.15e-05 0.298 GCTACCACCAGAAGCCAGAGG
M4427_1.02 CTCF chr18 + 49687553 49687573 6.22e-05 0.299 ttggcttgcagatggctctct
M4427_1.02 CTCF chr6 + 53061702 53061722 6.37e-05 0.299 AGGACCGGCCGAGGGCTCCGT
M4427_1.02 CTCF chr5 - 1950831 1950851 6.49e-05 0.299 ATGCACAGCAGATGACACACG
M4427_1.02 CTCF chr2 + 196548813 196548833 6.49e-05 0.299 ttggcttataggtggcggtct
M4427_1.02 CTCF chr17 - 41547634 41547654 6.58e-05 0.299 GCATCCACCAGGGGCCCCACA
M4427_1.02 CTCF chr14 - 94882589 94882609 6.63e-05 0.299 TTGGCTTGCAGGTGGCCGCCT
M4427_1.02 CTCF chr17 - 64776851 64776871 6.65e-05 0.299 GCAGGCTCCCGGTGGCGCACT
M4427_1.02 CTCF chr5 + 134570852 134570872 6.7e-05 0.299 TGCCCCACGTGGGGGTGCTGG
M4427_1.02 CTCF chr5 - 1950937 1950957 6.79e-05 0.299 AGGCACAGCAGACGGCACAAG
M4427_1.02 CTCF chr19 - 7457228 7457248 6.79e-05 0.299 ATGGCCACTCGAGGACACAGA
M4427_1.02 CTCF chr17 + 30724402 30724422 6.81e-05 0.299 agagacacaagaggtcacagc
M4427_1.02 CTCF chr7 - 149874013 149874033 6.93e-05 0.299 GGGCCGAGCAGCGGGCGCTGC
M4427_1.02 CTCF chr8 - 30136349 30136369 6.96e-05 0.299 GTGGCTTGCGGGTGGCAGTGT
M4427_1.02 CTCF chr21 - 43854479 43854499 6.96e-05 0.299 TCCGGCAGTAGGGGCCGCAAA
M4427_1.02 CTCF chr3 - 59052994 59053014 6.98e-05 0.299 AAAGCCACTAGGGGGAGTGTG
M4427_1.02 CTCF chr5 - 1950853 1950873 7.01e-05 0.299 ATACACAGCAGATGACGCAGG
M4427_1.02 CTCF chr14 + 54396772 54396792 7.31e-05 0.306 CTGGCGGGAGGAGGGCGCCCT
M4427_1.02 CTCF chr6 + 137219433 137219453 7.31e-05 0.306 GGCGTCGGCAGGAGGCGGGAC
M4427_1.02 CTCF chr2 + 233352716 233352736 7.39e-05 0.306 ggtgtcggcagggggagttcc
M4427_1.02 CTCF chr9 + 90053207 90053227 7.41e-05 0.306 catgacagatgggggcgctca
M4427_1.02 CTCF chr5 - 1950991 1951011 7.49e-05 0.306 ACGCACAGCAGATGACACACG
M4427_1.02 CTCF chr5 - 1951042 1951062 7.49e-05 0.306 ACGCACAGCAGATGACACACG
M4427_1.02 CTCF chrX + 153749301 153749321 7.54e-05 0.306 aaggccacatgaggccaccac
M4427_1.02 CTCF chr11 + 64843234 64843254 7.59e-05 0.306 ATTGTCAACAGAGGGCCCCCA
M4427_1.02 CTCF chr6 - 39229121 39229141 8.03e-05 0.319 GCTTTCTCTAGGAGGCGGCCG
M4427_1.02 CTCF chr12 - 115912481 115912501 8.03e-05 0.319 TAGGCCACAAGAAGACGGCCA
M4427_1.02 CTCF chr19 + 42268243 42268263 8.14e-05 0.321 CTCCCCTCCCGGTGGCAACAG
M4427_1.02 CTCF chr21 - 43902551 43902571 8.22e-05 0.322 TCTGCCATATGAGGGCACAAC
M4427_1.02 CTCF chr10 - 69696374 69696394 8.28e-05 0.322 TGAGGCCCCTGGGGGCACCAT
M4427_1.02 CTCF chr1 + 20486780 20486800 8.37e-05 0.322 AGGGCCTCCAGGAGGGGGAGG
M4427_1.02 CTCF chr17 - 34575525 34575545 8.4e-05 0.322 ATGGCCAGCATGTGGCTTTCC
M4427_1.02 CTCF chrX + 47991195 47991215 8.63e-05 0.329 aaagacaccagaggtccctct
M4427_1.02 CTCF chr1 + 40709562 40709582 8.78e-05 0.332 TCTCCCAGTCGGTGGAGGTAT
M4427_1.02 CTCF chr8 - 26127301 26127321 8.96e-05 0.334 TGAGCCACCAGGATGTGCCCT
M4427_1.02 CTCF chr3 - 42013127 42013147 9.06e-05 0.334 GATGCCACCAAAGGGTGACAG
M4427_1.02 CTCF chr19 + 42268415 42268435 9.09e-05 0.334 ACAACCACGTGGGGGAGGGGT
M4427_1.02 CTCF chr9 + 90053318 90053338 9.09e-05 0.334 ttggcttgcagatggcgtctt
M4427_1.02 CTCF chr6 - 35318263 35318283 9.15e-05 0.334 TTGGCCGCCCGGCGCCGCTCC
M4427_1.02 CTCF chr1 + 1781379 1781399 9.24e-05 0.334 GGCGTCTGCAGGGGCCAGTGT
M4427_1.02 CTCF chr21 - 33839529 33839549 9.31e-05 0.334 TGCTCCACACGGGGGTGGCCT
M4427_1.02 CTCF chr6 + 135183736 135183756 9.31e-05 0.334 AGGTCCTGCAGAAGTCACTCT
M4427_1.02 CTCF chr19 + 14325374 14325394 9.57e-05 0.339 ttggcttgcagatggccgcct
M4427_1.02 CTCF chr19 - 37371419 37371439 9.57e-05 0.339 TCACACACAAGCGGGCGCACG
M4427_1.02 CTCF chr2 - 192195381 192195401 9.73e-05 0.339 GTCGCCAGCAGGACGCCCTCT
M4427_1.02 CTCF chr16 + 24498497 24498517 9.8e-05 0.339 GGAACCACTAGATGATGGCCC
M4427_1.02 CTCF chr9 + 88741378 88741398 9.83e-05 0.339 atgaccatgtgagggcacagg
M4427_1.02 CTCF chr6 - 53061884 53061904 9.86e-05 0.339 AGGGCCAGCGAGGGGAGCTGC
M4427_1.02 CTCF chr15 + 69028278 69028298 9.93e-05 0.339 AGGAGCTGCAGGAGGCACTGA
M4427_1.02 CTCF chr10 + 78444823 78444843 9.97e-05 0.339 ttggctcccaggtggctgtgt
M4427_1.02 CTCF chr7 - 149874229 149874249 9.97e-05 0.339 GCCGCCGCCCCGGGGCGGAGG

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_34 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif M4427_1.02 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_34 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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