Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
CTTCYAGC 8 CTTCCAGC
GYAGGGY 7 GCAGGGT
AAGGTGYY 8 AAGGTGTC
GRAACCA 7 GAAACCA
ATYTTGGA 8 ATCTTGGA
GTTCTRGA 8 GTTCTGGA
GAGGCYTC 8 GAGGCCTC
CAAGYCAA 8 CAAGCCAA
GTGAGRAA 8 GTGAGAAA
AKAAAT 6 AGAAAT
TAAACMA 7 TAAACAA
CCTSCAGC 8 CCTGCAGC
CATCTRCA 8 CATCTGCA
TCCRAGA 7 TCCAAGA
AGGTDTCA 8 AGGTGTCA
GARAATA 7 GAAAATA
GGAGARA 7 GGAGAGA
CCTCAGAA 8 CCTCAGAA
CTCCAG 6 CTCCAG
ACTRTG 6 ACTGTG
GGCTTRCA 8 GGCTTGCA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.255 C 0.245 G 0.245 T 0.255

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CATCTRCA DREME-13 chr12 + 2592033 2592040 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr1 + 3359540 3359547 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr10 - 8246762 8246769 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr6 + 10286383 10286390 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr12 - 10696148 10696155 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr5 + 10891293 10891300 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr2 + 11994924 11994931 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr10 + 12260145 12260152 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr19 - 14325380 14325387 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr5 - 14546694 14546701 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr10 - 17242185 17242192 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr1 - 17746845 17746852 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr11 + 18011436 18011443 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr1 + 20486611 20486618 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr20 - 22586140 22586147 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr3 + 23644253 23644260 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chrX - 23945279 23945286 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr1 - 24172852 24172859 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr8 - 26127185 26127192 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr1 + 26814549 26814556 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr12 - 26970358 26970365 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr8 + 27511046 27511053 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr13 + 27672183 27672190 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr8 + 29748498 29748505 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr19 - 29934465 29934472 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr19 + 30170624 30170631 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr19 - 30564818 30564825 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr22 + 32519036 32519043 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr7 - 34176026 34176033 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr1 - 34695225 34695232 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr21 + 37715789 37715796 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr8 - 38042570 38042577 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr20 - 38664531 38664538 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr2 + 39386227 39386234 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr4 + 40547431 40547438 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr19 + 40691455 40691462 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr13 - 41113594 41113601 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr13 - 41457795 41457802 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr17 - 41547652 41547659 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chrX + 44559226 44559233 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr18 + 48551213 48551220 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr18 - 48757058 48757065 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr18 - 49687559 49687566 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr11 + 57287753 57287760 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr15 - 60073657 60073664 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr11 + 62456133 62456140 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr18 + 62607671 62607678 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr18 - 62749626 62749633 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr12 - 69951334 69951341 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr14 + 72691825 72691832 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr17 + 73023927 73023934 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr5 - 74917622 74917629 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr6 - 79380770 79380777 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr9 - 90053324 90053331 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr9 + 91515170 91515177 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr13 - 94431363 94431370 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr14 + 96393707 96393714 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr13 - 98116373 98116380 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr4 - 102760797 102760804 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr12 - 104693051 104693058 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr7 - 112171910 112171917 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr11 - 114270647 114270654 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr12 - 115912475 115912482 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr12 + 117677431 117677438 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr2 + 121043578 121043585 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr7 + 124919659 124919666 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr7 - 128564529 128564536 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr8 + 142137152 142137159 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr4 - 148075403 148075410 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chrX - 153749137 153749144 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr5 + 159121322 159121329 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr1 + 162668733 162668740 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr2 + 175731414 175731421 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr4 + 182073423 182073430 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr1 + 182637907 182637914 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr2 - 199834071 199834078 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr1 + 202283959 202283966 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr2 - 216844886 216844893 1.52e-05 0.109 CATCTGCA
CATCTRCA DREME-13 chr1 + 229575190 229575197 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr1 + 230503291 230503298 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr1 + 231076942 231076949 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr2 + 235332416 235332423 1.52e-05 0.109 catctgca
CATCTRCA DREME-13 chr12 - 2591882 2591889 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr4 - 3627641 3627648 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr4 - 3627716 3627723 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr20 - 4709504 4709511 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr5 - 6454306 6454313 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr4 + 6568757 6568764 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr6 - 7670650 7670657 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr1 + 7870314 7870321 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr6 - 8132339 8132346 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr19 + 8621873 8621880 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr19 - 8691137 8691144 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr17 - 9237250 9237257 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr2 + 9519765 9519772 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr8 - 10682314 10682321 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr19 - 14612264 14612271 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr10 + 15626798 15626805 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr1 - 24887099 24887106 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr18 - 26562776 26562783 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr8 + 26684841 26684848 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr8 - 28549103 28549110 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr21 - 33839461 33839468 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr1 + 45364387 45364394 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr22 - 45458787 45458794 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr10 + 45490455 45490462 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr17 + 51097239 51097246 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr16 - 54380536 54380543 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr5 - 57836637 57836644 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr15 + 65976540 65976547 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr17 - 78550816 78550823 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr6 - 79380755 79380762 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr17 - 81739447 81739454 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr6 + 83331668 83331675 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr12 + 89258390 89258397 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr12 + 98399769 98399776 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr14 + 99071270 99071277 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr15 - 99366256 99366263 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr9 + 113610841 113610848 3.11e-05 0.142 CATCTACa
CATCTRCA DREME-13 chr3 - 126310645 126310652 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr11 - 130484522 130484529 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr6 + 134670311 134670318 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr4 + 148075548 148075555 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chrX - 151412779 151412786 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr6 - 154841358 154841365 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr1 + 167502801 167502808 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr2 - 230846595 230846602 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr2 - 233352760 233352767 3.11e-05 0.142 CATCTACA
CATCTRCA DREME-13 chr1 + 237580859 237580866 3.11e-05 0.142 catctaca
CATCTRCA DREME-13 chr8 + 713212 713219 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr11 + 2735906 2735913 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr1 - 2929355 2929362 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr16 + 3045624 3045631 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr17 + 3893800 3893807 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr16 - 4532290 4532297 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr20 + 4709324 4709331 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr6 + 7670802 7670809 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr1 - 7870180 7870187 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr19 - 7976494 7976501 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr12 - 10695943 10695950 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr3 + 12451887 12451894 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr5 - 14546482 14546489 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr19 - 14703839 14703846 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr10 - 15626775 15626782 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr1 + 24173006 24173013 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr1 + 24887128 24887135 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr8 + 26127336 26127343 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr8 + 26127351 26127358 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr17 - 27365296 27365303 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr8 + 28548886 28548893 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr21 + 29362829 29362836 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr16 + 30498082 30498089 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr22 - 30513516 30513523 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr17 + 31540994 31541001 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr6 + 33437021 33437028 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr21 - 36494565 36494572 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr6 + 37010414 37010421 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr19 + 38005170 38005177 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr1 + 38488917 38488924 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr2 - 39386204 39386211 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chrX + 40487048 40487055 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr21 - 43854150 43854157 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chrX - 48490181 48490188 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr18 + 48589373 48589380 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr12 - 49865199 49865206 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr13 + 51520909 51520916 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr5 + 57836666 57836673 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr17 - 60088241 60088248 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr8 + 61094747 61094754 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr20 + 61413994 61414001 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr15 - 64015748 64015755 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr17 - 66579746 66579753 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr11 + 76770242 76770249 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr11 + 76770349 76770356 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr9 + 78100135 78100142 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr17 - 78550445 78550452 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr5 - 90382897 90382904 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr14 - 95047927 95047934 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr8 - 102732870 102732877 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr6 + 105983005 105983012 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr12 - 124776216 124776223 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr3 - 127724005 127724012 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr10 - 128122252 128122259 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr7 + 129177052 129177059 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr6 + 133131071 133131078 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr4 + 139905818 139905825 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr7 - 149827836 149827843 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr7 + 149874097 149874104 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr6 - 163753705 163753712 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr6 + 163754028 163754035 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr1 - 171632005 171632012 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr5 + 178227276 178227283 6.22e-05 0.182 catctcca
CATCTRCA DREME-13 chr2 - 192195311 192195318 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr3 - 194111075 194111082 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr3 - 194719535 194719542 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr1 - 204634473 204634480 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr1 + 223094616 223094623 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr1 + 227319185 227319192 6.22e-05 0.182 CATCTCCA
CATCTRCA DREME-13 chr1 - 229390279 229390286 6.22e-05 0.182 CATCTTCA
CATCTRCA DREME-13 chr1 + 235604596 235604603 6.22e-05 0.182 catcttca
CATCTRCA DREME-13 chr1 + 235951348 235951355 6.22e-05 0.182 CATCTTCA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_34 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif CATCTRCA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_34
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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