# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:55:55 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF548.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:55:55 PDT 2018) # host: indra # when: Thu May 10 18:33:47 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.233 C 0.269 G 0.266 T 0.233 MOTIF CTTCYAGC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CTTCYAGC GCTRGAAG 286 7 3.0e-094 7.9e-090 # CTTCCAGC GCTGGAAG 260 3 7.5e-089 2.0e-084 # CTTCTAGC GCTAGAAG 26 4 2.4e-005 6.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 286 E= 7.9e-090 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GYAGGGY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GYAGGGY RCCCTRC 337 40 1.1e-083 2.9e-079 # GCAGGGT ACCCTGC 182 14 7.6e-045 2.0e-040 # GCAGGGC GCCCTGC 127 21 2.7e-022 7.1e-018 # GTAGGGT ACCCTAC 20 2 5.3e-005 1.4e+000 # GTAGGGC GCCCTAC 14 3 6.1e-003 1.6e+002 letter-probability matrix: alength= 4 w= 7 nsites= 349 E= 2.9e-079 0.000000 0.000000 1.000000 0.000000 0.000000 0.902579 0.000000 0.097421 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.412607 0.000000 0.587393 MOTIF AAGGTGYY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAGGTGYY RRCACCTT 228 7 1.2e-069 3.2e-065 # AAGGTGTC GACACCTT 130 3 2.0e-038 5.0e-034 # AAGGTGCC GGCACCTT 49 0 6.4e-016 1.6e-011 # AAGGTGTT AACACCTT 28 0 2.7e-009 6.9e-005 # AAGGTGCT AGCACCTT 22 4 2.3e-004 6.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 229 E= 3.2e-065 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.310044 0.000000 0.689956 0.000000 0.781659 0.000000 0.218341 MOTIF GRAACCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GRAACCA TGGTTYC 198 15 1.4e-049 3.4e-045 # GAAACCA TGGTTTC 149 10 3.0e-037 7.7e-033 # GGAACCA TGGTTCC 52 5 1.2e-011 3.1e-007 letter-probability matrix: alength= 4 w= 7 nsites= 201 E= 3.4e-045 0.000000 0.000000 1.000000 0.000000 0.741294 0.000000 0.258706 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATYTTGGA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ATYTTGGA TCCAARAT 172 6 1.6e-049 4.0e-045 # ATCTTGGA TCCAAGAT 146 5 1.8e-041 4.5e-037 # ATTTTGGA TCCAAAAT 26 1 1.6e-007 4.1e-003 letter-probability matrix: alength= 4 w= 8 nsites= 173 E= 4.0e-045 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.849711 0.000000 0.150289 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTTCTRGA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GTTCTRGA TCYAGAAC 138 1 3.0e-044 7.6e-040 # GTTCTGGA TCCAGAAC 129 1 4.8e-041 1.2e-036 # GTTCTAGA TCTAGAAC 9 0 1.9e-003 4.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 138 E= 7.6e-040 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.065217 0.000000 0.934783 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGGCYTC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GAGGCYTC GARGCCTC 95 8 8.4e-022 2.1e-017 # GAGGCCTC GAGGCCTC 76 5 1.2e-018 3.1e-014 # GAGGCTTC GAAGCCTC 19 3 3.9e-004 9.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 2.1e-017 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAAGYCAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CAAGYCAA TTGRCTTG 76 2 9.2e-022 2.3e-017 # CAAGCCAA TTGGCTTG 64 1 3.2e-019 8.0e-015 # CAAGTCAA TTGACTTG 12 1 1.6e-003 4.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 2.3e-017 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.842105 0.000000 0.157895 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTGAGRAA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GTGAGRAA TTYCTCAC 72 2 1.7e-020 4.3e-016 # GTGAGAAA TTTCTCAC 58 1 2.6e-017 6.4e-013 # GTGAGGAA TTCCTCAC 14 1 4.6e-004 1.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 4.3e-016 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.808219 0.000000 0.191781 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AKAAAT DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AKAAAT ATTTMT 131 31 3.2e-018 8.0e-014 # AGAAAT ATTTCT 98 22 4.3e-014 1.1e-009 # ATAAAT ATTTAT 53 9 2.3e-009 5.6e-005 letter-probability matrix: alength= 4 w= 6 nsites= 139 E= 8.0e-014 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.669065 0.330935 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF TAAACMA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST TAAACMA TKGTTTA 39 2 2.2e-010 5.4e-006 # TAAACAA TTGTTTA 25 0 2.3e-008 5.7e-004 # TAAACCA TGGTTTA 17 2 3.3e-004 8.2e+000 letter-probability matrix: alength= 4 w= 7 nsites= 41 E= 5.4e-006 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.609756 0.390244 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTSCAGC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CCTSCAGC GCTGSAGG 51 8 2.0e-009 5.0e-005 # CCTGCAGC GCTGCAGG 26 1 1.6e-007 3.9e-003 # CCTCCAGC GCTGGAGG 25 7 9.2e-004 2.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 5.0e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.472727 0.527273 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CATCTRCA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CATCTRCA TGYAGATG 32 1 2.7e-009 6.4e-005 # CATCTGCA TGCAGATG 23 1 1.2e-006 3.0e-002 # CATCTACA TGTAGATG 9 0 1.9e-003 4.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 6.4e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.281250 0.000000 0.718750 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCCRAGA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST TCCRAGA TCTYGGA 44 7 3.4e-008 8.2e-004 # TCCAAGA TCTTGGA 32 6 9.2e-006 2.2e-001 # TCCGAGA TCTCGGA 12 1 1.6e-003 4.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 44 E= 8.2e-004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.000000 0.272727 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGTDTCA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST AGGTDTCA TGAHACCT 31 2 4.6e-008 1.1e-003 # AGGTGTCA TGACACCT 15 2 1.1e-003 2.7e+001 # AGGTATCA TGATACCT 8 0 3.8e-003 9.2e+001 # AGGTTTCA TGAAACCT 8 0 3.8e-003 9.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.1e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.258065 0.000000 0.483871 0.258065 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GARAATA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST GARAATA TATTYTC 24 0 4.7e-008 1.1e-003 # GAAAATA TATTTTC 13 0 1.1e-004 2.8e+000 # GAGAATA TATTCTC 11 0 4.7e-004 1.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 24 E= 1.1e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.541667 0.000000 0.458333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGAGARA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST GGAGARA TYTCTCC 98 42 2.8e-007 6.8e-003 # GGAGAAA TTTCTCC 39 13 1.5e-004 3.7e+000 # GGAGAGA TCTCTCC 60 31 1.1e-003 2.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 100 E= 6.8e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTCAGAA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CCTCAGAA TTCTGAGG 38 6 3.1e-007 7.3e-003 # CCTCAGAA TTCTGAGG 38 6 3.1e-007 7.3e-003 letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 7.3e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCCAG DREME-19 # Word RC Word Pos Neg P-value E-value # BEST CTCCAG CTGGAG 143 79 1.2e-006 3.0e-002 # CTCCAG CTGGAG 143 79 1.2e-006 3.0e-002 letter-probability matrix: alength= 4 w= 6 nsites= 150 E= 3.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACTRTG DREME-20 # Word RC Word Pos Neg P-value E-value # BEST ACTRTG CAYAGT 82 34 1.7e-006 3.9e-002 # ACTATG CATAGT 21 3 1.2e-004 2.9e+000 # ACTGTG CACAGT 61 31 7.7e-004 1.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 84 E= 3.9e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGCTTRCA DREME-21 # Word RC Word Pos Neg P-value E-value # BEST GGCTTRCA TGYAAGCC 28 3 1.8e-006 4.2e-002 # GGCTTGCA TGCAAGCC 21 3 1.2e-004 2.8e+000 # GGCTTACA TGTAAGCC 7 0 7.7e-003 1.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.2e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 81.11 seconds