Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
TAAATAAA | 8 | TAAATAAA |
CCTTDCC | 7 | CCTTTCC |
RTCTCAAA | 8 | GTCTCAAA |
ACAGWG | 6 | ACAGAG |
GGAATRGA | 8 | GGAATGGA |
AGGGGCWG | 8 | AGGGGCAG |
ARCAAAGG | 8 | AACAAAGG |
GTCTYR | 6 | GTCTTA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.269 C 0.231 G 0.231 T 0.269
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
ARCAAAGG | DREME-7 | chr16 | - | 11580684 | 11580691 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr16 | - | 12680049 | 12680056 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr19 | - | 13742080 | 13742087 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr1 | - | 16905626 | 16905633 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr8 | - | 17831717 | 17831724 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr10 | - | 21290660 | 21290667 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr17 | - | 30717449 | 30717456 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr13 | - | 45771180 | 45771187 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr13 | - | 50532881 | 50532888 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr9 | - | 77111573 | 77111580 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr3 | - | 78982068 | 78982075 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr10 | - | 79067386 | 79067393 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr2 | - | 85555055 | 85555062 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr4 | - | 88582730 | 88582737 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr7 | - | 99820583 | 99820590 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr3 | - | 99843150 | 99843157 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr11 | - | 102555331 | 102555338 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr8 | - | 105275052 | 105275059 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr7 | - | 139124649 | 139124656 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr6 | - | 152418869 | 152418876 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr5 | - | 154181357 | 154181364 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr1 | - | 155080871 | 155080878 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr5 | - | 181235554 | 181235561 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr1 | - | 181385826 | 181385833 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr8 | + | 9077586 | 9077593 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr12 | + | 11154587 | 11154594 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr18 | + | 13482780 | 13482787 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chrX | + | 17968121 | 17968128 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr9 | + | 20115185 | 20115192 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr16 | + | 21184197 | 21184204 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr10 | + | 23089880 | 23089887 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr21 | + | 36123253 | 36123260 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr8 | + | 36916252 | 36916259 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr7 | + | 43621834 | 43621841 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr13 | + | 45771085 | 45771092 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr5 | + | 55463890 | 55463897 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr15 | + | 59596853 | 59596860 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr11 | + | 60909000 | 60909007 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr15 | + | 67064467 | 67064474 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr5 | + | 74309257 | 74309264 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr3 | + | 77479454 | 77479461 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr3 | + | 101629231 | 101629238 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr10 | + | 120034462 | 120034469 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr11 | + | 122823763 | 122823770 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr5 | + | 124286719 | 124286726 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr5 | + | 125032777 | 125032784 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr6 | + | 161526979 | 161526986 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr5 | + | 168287130 | 168287137 | 1.73e-05 | 0.205 | AACAAAGG |
ARCAAAGG | DREME-7 | chr1 | + | 232193588 | 232193595 | 1.73e-05 | 0.205 | aacaaagg |
ARCAAAGG | DREME-7 | chr16 | - | 5231547 | 5231554 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr17 | + | 7234385 | 7234392 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr1 | + | 8075725 | 8075732 | 3.23e-05 | 0.246 | agcaaagg |
ARCAAAGG | DREME-7 | chr1 | + | 8075984 | 8075991 | 3.23e-05 | 0.246 | agcaaagg |
ARCAAAGG | DREME-7 | chr8 | + | 18479325 | 18479332 | 3.23e-05 | 0.246 | agcaaagg |
ARCAAAGG | DREME-7 | chr22 | + | 19756356 | 19756363 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr22 | - | 27225007 | 27225014 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr2 | - | 27719975 | 27719982 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr16 | - | 29740954 | 29740961 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr15 | + | 40545619 | 40545626 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr19 | - | 43703068 | 43703075 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr19 | - | 43703088 | 43703095 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr17 | - | 50783186 | 50783193 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr5 | - | 72272637 | 72272644 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr3 | + | 77479206 | 77479213 | 3.23e-05 | 0.246 | agcaaagg |
ARCAAAGG | DREME-7 | chr12 | + | 90321568 | 90321575 | 3.23e-05 | 0.246 | agcaaagg |
ARCAAAGG | DREME-7 | chr11 | + | 93768845 | 93768852 | 3.23e-05 | 0.246 | agcaaagg |
ARCAAAGG | DREME-7 | chr14 | + | 104996646 | 104996653 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr2 | - | 108995782 | 108995789 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr2 | - | 119538011 | 119538018 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr5 | + | 127257105 | 127257112 | 3.23e-05 | 0.246 | agcaaagg |
ARCAAAGG | DREME-7 | chr4 | - | 128228431 | 128228438 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr3 | + | 150251203 | 150251210 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr3 | - | 150251511 | 150251518 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr3 | - | 167672244 | 167672251 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr6 | - | 169831867 | 169831874 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chr4 | + | 174453917 | 174453924 | 3.23e-05 | 0.246 | AGCAAAGG |
ARCAAAGG | DREME-7 | chrUn_KI270466v1 | - | 400 | 407 | 6.45e-05 | 0.398 | ATCAAAGG |
ARCAAAGG | DREME-7 | chrUn_KI270467v1 | - | 3220 | 3227 | 6.45e-05 | 0.398 | ATCAAAGG |
ARCAAAGG | DREME-7 | chrUn_KI270467v1 | - | 3220 | 3227 | 6.45e-05 | 0.398 | ATCAAAGG |
ARCAAAGG | DREME-7 | chr19 | - | 4444080 | 4444087 | 6.45e-05 | 0.398 | ATCAAAGG |
ARCAAAGG | DREME-7 | chr17 | - | 8094052 | 8094059 | 6.45e-05 | 0.398 | ATCAAAGG |
ARCAAAGG | DREME-7 | chr16 | + | 19084153 | 19084160 | 6.45e-05 | 0.398 | accaaagg |
ARCAAAGG | DREME-7 | chr9 | + | 21765502 | 21765509 | 6.45e-05 | 0.398 | accaaagg |
ARCAAAGG | DREME-7 | chr14 | - | 24818222 | 24818229 | 6.45e-05 | 0.398 | ATCAAAGG |
ARCAAAGG | DREME-7 | chr14 | - | 24818289 | 24818296 | 6.45e-05 | 0.398 | ACCAAAGG |
ARCAAAGG | DREME-7 | chr10 | + | 28347304 | 28347311 | 6.45e-05 | 0.398 | atcaaagg |
ARCAAAGG | DREME-7 | chr1 | - | 33497781 | 33497788 | 6.45e-05 | 0.398 | ACCAAAGG |
ARCAAAGG | DREME-7 | chr8 | + | 33607214 | 33607221 | 6.45e-05 | 0.398 | atcaaagg |
ARCAAAGG | DREME-7 | chr10 | + | 38527501 | 38527508 | 6.45e-05 | 0.398 | ATCAAAGG |
ARCAAAGG | DREME-7 | chr10 | + | 41899750 | 41899757 | 6.45e-05 | 0.398 | atcaaagg |
ARCAAAGG | DREME-7 | chr5 | + | 67520530 | 67520537 | 6.45e-05 | 0.398 | ACCAAAGG |
ARCAAAGG | DREME-7 | chr14 | - | 90369766 | 90369773 | 6.45e-05 | 0.398 | ATCAAAGG |
ARCAAAGG | DREME-7 | chr10 | + | 114649464 | 114649471 | 6.45e-05 | 0.398 | atcaaagg |
ARCAAAGG | DREME-7 | chr1 | - | 224623897 | 224623904 | 6.45e-05 | 0.398 | ACCAAAGG |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_13 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif ARCAAAGG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_13 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.