# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:28:13 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF530.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:28:14 PST 2017) # host: kali # when: Mon Dec 18 16:47:59 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.302 C 0.206 G 0.221 T 0.271 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 169 33 1.6e-027 4.4e-023 # TAAATAAA TTTATTTA 169 33 1.6e-027 4.4e-023 letter-probability matrix: alength= 4 w= 8 nsites= 831 E= 4.4e-023 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTTDCC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCTTDCC GGHAAGG 202 56 9.0e-026 2.5e-021 # CCTTTCC GGAAAGG 161 44 3.7e-020 1.0e-015 # CCTTGCC GGCAAGG 38 8 3.2e-006 8.7e-002 # CCTTACC GGTAAGG 20 5 1.9e-003 5.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 377 E= 2.5e-021 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.053050 0.000000 0.090186 0.856764 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RTCTCAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST RTCTCAAA TTTGAGAY 88 4 2.5e-023 6.9e-019 # GTCTCAAA TTTGAGAC 65 3 3.3e-017 9.1e-013 # ATCTCAAA TTTGAGAT 24 1 6.2e-007 1.7e-002 letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 6.9e-019 0.269663 0.000000 0.730337 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAGWG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACAGWG CWCTGT 140 34 3.8e-019 1.0e-014 # ACAGAG CTCTGT 103 24 2.1e-014 5.6e-010 # ACAGTG CACTGT 44 11 2.7e-006 7.4e-002 letter-probability matrix: alength= 4 w= 6 nsites= 161 E= 1.0e-014 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.695652 0.000000 0.000000 0.304348 0.000000 0.000000 1.000000 0.000000 MOTIF GGAATRGA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GGAATRGA TCYATTCC 77 11 1.7e-014 4.6e-010 # GGAATGGA TCCATTCC 74 11 1.1e-013 3.0e-009 # GGAATAGA TCTATTCC 16 0 1.4e-005 3.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 261 E= 4.6e-010 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.057471 0.000000 0.942529 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGGGCWG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGGGGCWG CWGCCCCT 59 6 7.3e-013 2.0e-008 # AGGGGCAG CTGCCCCT 46 4 1.1e-010 2.8e-006 # AGGGGCTG CAGCCCCT 14 2 2.0e-003 5.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 2.0e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.754098 0.000000 0.000000 0.245902 0.000000 0.000000 1.000000 0.000000 MOTIF ARCAAAGG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ARCAAAGG CCTTTGYT 51 4 4.0e-012 1.1e-007 # AACAAAGG CCTTTGTT 33 2 1.2e-008 3.3e-004 # AGCAAAGG CCTTTGCT 18 2 1.8e-004 4.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.1e-007 1.000000 0.000000 0.000000 0.000000 0.647059 0.000000 0.352941 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GTCTYR DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GTCTYR YRAGAC 141 55 8.5e-012 2.2e-007 # GTCTCG CGAGAC 28 6 8.0e-005 2.1e+000 # GTCTTA TAAGAC 37 12 1.8e-004 4.7e+000 # GTCTTG CAAGAC 41 16 4.8e-004 1.3e+001 # GTCTCA TGAGAC 44 22 3.7e-003 9.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 157 E= 2.2e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.484076 0.000000 0.515924 0.541401 0.000000 0.458599 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 45.31 seconds