Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
ATAAATAA 8 ATAAATAA
GARAC 5 GAGAC
CTTCAYCC 8 CTTCACCC
ACASAG 6 ACAGAG
CATCTYA 7 CATCTCA
ATTRGGG 7 ATTGGGG
CAARACY 7 CAAGACT
AGCTGGR 7 AGCTGGA
CAGCAYAC 8 CAGCATAC
CCTGGGC 7 CCTGGGC
GGYACA 6 GGTACA
AGCYTC 6 AGCTTC
GATAAAGA 8 GATAAAGA
TAGYACA 7 TAGTACA
AATTTCCT 8 AATTTCCT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.296 C 0.204 G 0.204 T 0.296


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CTTCAYCC DREME-3 chr20 + 646706 646713 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr12 + 2405209 2405216 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr19 + 4748680 4748687 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr6 - 7836568 7836575 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr1 - 14539503 14539510 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr6 - 14746351 14746358 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr1 + 15142415 15142422 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr1 + 17227657 17227664 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr6 - 20247220 20247227 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr20 + 20901721 20901728 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr14 + 21032900 21032907 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr6 + 21986061 21986068 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr8 - 22112396 22112403 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr1 + 24251650 24251657 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr3 + 24715582 24715589 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr2 + 25075004 25075011 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr15 + 25839798 25839805 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr14 - 26603103 26603110 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr8 - 26617207 26617214 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr22 - 26703515 26703522 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr22 + 27153062 27153069 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr22 - 27535671 27535678 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr16 - 27658013 27658020 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr13 + 27835971 27835978 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr22 + 29390466 29390473 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr7 - 30874898 30874905 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr19 - 31333157 31333164 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr6 + 32158230 32158237 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr6 + 32428112 32428119 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr6 - 33767148 33767155 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr20 - 34669299 34669306 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr21 - 35150781 35150788 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr20 + 38458486 38458493 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr4 + 40347652 40347659 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr19 - 46887446 46887453 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chrX - 47163387 47163394 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr17 - 47251074 47251081 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr19 + 47321752 47321759 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr20 - 48258032 48258039 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr17 + 48348519 48348526 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr18 - 55220032 55220039 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr20 + 57291863 57291870 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr6 + 57480357 57480364 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr12 + 57866476 57866483 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr17 + 58832684 58832691 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr15 + 65060372 65060379 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr3 - 66141191 66141198 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr16 - 66417516 66417523 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr15 - 68491635 68491642 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr17 + 70996200 70996207 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr10 - 71058538 71058545 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr10 + 71455225 71455232 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr15 - 72189476 72189483 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr5 + 76165212 76165219 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr18 + 76549526 76549533 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr2 + 86707114 86707121 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr15 + 90182818 90182825 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr14 - 92608273 92608280 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr11 + 94772101 94772108 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr8 - 97810469 97810476 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr2 + 99259643 99259650 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr1 - 99992539 99992546 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr8 - 100535300 100535307 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr6 - 100599596 100599603 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr12 - 106333224 106333231 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chrX + 110060496 110060503 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr12 + 110869976 110869983 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr10 + 112875161 112875168 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr13 + 113894978 113894985 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr9 - 114506222 114506229 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr10 - 116801874 116801881 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr11 + 119412206 119412213 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr2 - 121627212 121627219 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr12 + 122168649 122168656 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr12 + 124515420 124515427 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr3 + 126973983 126973990 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr3 - 130740080 130740087 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr7 - 140424560 140424567 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr5 + 142411284 142411291 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr6 + 150173095 150173102 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr5 + 169760391 169760398 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr5 - 173191238 173191245 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr1 + 183150633 183150640 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr1 - 213181034 213181041 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr1 + 226037939 226037946 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr2 - 232597595 232597602 9.1e-06 0.0613 CTTCACCC
CTTCAYCC DREME-3 chr2 + 234293017 234293024 9.1e-06 0.0613 cttcaccc
CTTCAYCC DREME-3 chr6 + 817364 817371 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr19 + 2577316 2577323 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr10 - 6455798 6455805 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr10 - 6457580 6457587 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr2 - 9024835 9024842 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr1 + 10087370 10087377 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr3 + 10360657 10360664 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr16 - 15229833 15229840 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr2 - 19645002 19645009 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr21 + 25864730 25864737 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr8 + 26722478 26722485 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr8 - 29992719 29992726 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr10 - 34273652 34273659 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr6 - 36169823 36169830 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr17 - 36794186 36794193 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr7 - 37231820 37231827 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr17 + 41591402 41591409 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr19 + 43947520 43947527 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr19 - 50447287 50447294 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr10 - 52007420 52007427 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr4 - 54043863 54043870 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr16 - 55254199 55254206 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr20 + 57185313 57185320 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr17 + 57515978 57515985 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr3 - 58315635 58315642 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr18 + 58924640 58924647 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr17 + 59538699 59538706 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr5 - 60718927 60718934 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr2 - 62402370 62402377 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr17 + 66936146 66936153 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr3 - 67609934 67609941 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr2 + 69605504 69605511 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr17 - 73040595 73040602 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr15 - 79111630 79111637 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr13 + 79989567 79989574 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr1 + 82079782 82079789 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr2 + 88499365 88499372 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr9 - 92774001 92774008 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr15 - 100980622 100980629 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr6 - 104754997 104755004 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr5 - 115311377 115311384 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr1 - 117844765 117844772 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr1 - 118791282 118791289 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr10 - 122967151 122967158 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr3 + 124147599 124147606 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr6 + 125514157 125514164 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr12 + 131061598 131061605 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr9 + 132144867 132144874 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr4 + 150931184 150931191 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr5 + 168676047 168676054 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr5 + 168676204 168676211 2.24e-05 0.0904 Cttcatcc
CTTCAYCC DREME-3 chr2 - 173961598 173961605 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr5 - 178264057 178264064 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr5 - 178264268 178264275 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr3 - 184012164 184012171 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr1 - 204667308 204667315 2.24e-05 0.0904 CTTCATCC
CTTCAYCC DREME-3 chr1 + 207994224 207994231 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr2 + 224421229 224421236 2.24e-05 0.0904 cttcatcc
CTTCAYCC DREME-3 chr10 - 11907330 11907337 4.47e-05 0.147 CTTCAACC
CTTCAYCC DREME-3 chr6 - 12481527 12481534 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chr1 - 17227427 17227434 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chr17 + 31936487 31936494 4.47e-05 0.147 cttcaacc
CTTCAYCC DREME-3 chr19 - 33122968 33122975 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chr19 - 35289711 35289718 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chr19 + 35882118 35882125 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr21 - 36123118 36123125 4.47e-05 0.147 CTTCAACC
CTTCAYCC DREME-3 chr6 + 38045200 38045207 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr19 + 39794542 39794549 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr19 - 40103711 40103718 4.47e-05 0.147 CTTCAACC
CTTCAYCC DREME-3 chrX - 41282357 41282364 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chr5 + 43014486 43014493 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr13 + 45064168 45064175 4.47e-05 0.147 cttcaacc
CTTCAYCC DREME-3 chr17 - 48017043 48017050 4.47e-05 0.147 CTTCAACC
CTTCAYCC DREME-3 chr12 - 56219913 56219920 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chr6 - 57480188 57480195 4.47e-05 0.147 CTTCAACC
CTTCAYCC DREME-3 chr1 + 57659942 57659949 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr2 - 62402178 62402185 4.47e-05 0.147 CTTCAACC
CTTCAYCC DREME-3 chr16 + 69408248 69408255 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr14 - 73694424 73694431 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chr15 + 79111520 79111527 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr15 + 90182738 90182745 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr6 - 90454125 90454132 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chrX + 117908132 117908139 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chrX + 123770627 123770634 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr7 + 140424270 140424277 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr5 + 154259180 154259187 4.47e-05 0.147 cttcaacc
CTTCAYCC DREME-3 chr1 + 155225424 155225431 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr5 - 160008778 160008785 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chr5 + 160243441 160243448 4.47e-05 0.147 cttcagcc
CTTCAYCC DREME-3 chr1 - 236315164 236315171 4.47e-05 0.147 CTTCAGCC
CTTCAYCC DREME-3 chr1 - 236476088 236476095 4.47e-05 0.147 CTTCAGCC

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_13 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif CTTCAYCC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_13 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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