# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 AAATAAATAAATAAATAAATAAAT MEME-1 AAATAAATAAATAAATAAATAAAT 6.5e-276 8.7e-279 -640.26 0.0 41 477 298 324 0.08595 3.7e-281 238 1 YTTBABMCAGHKTCYCVCWMTG MEME-2 YTTBABMCAGHKTCYCVCWMTG 2.2e-191 3.0e-194 -445.61 0.0 101 479 426 515 0.21086 1.2e-196 239 1 AAATAAATAAATAAAT MEME-3 AAATAAATAAATAAAT 3.5e-254 4.7e-257 -590.22 0.0 45 485 296 333 0.09278 1.9e-259 242 2 ATAAATAA DREME-1 ATAAATAA 6.3e-238 8.3e-241 -552.80 0.0 49 493 296 340 0.09939 3.4e-243 246 2 GARAC DREME-2 GAGAC 2.4e-008 3.2e-011 -24.16 0.0 102 496 191 562 0.20565 1.3e-013 247 2 CTTCAYCC DREME-3 CTTCAYCC 1.2e-055 1.6e-058 -133.10 0.0 103 493 122 143 0.20892 6.4e-061 246 2 ACASAG DREME-4 ACAGAG 3.2e-050 4.2e-053 -120.60 0.0 135 495 273 430 0.27273 1.7e-055 247 2 CATCTYA DREME-5 CATCTCA 9.5e-041 1.3e-043 -98.78 0.0 104 494 129 183 0.21053 5.1e-046 246 2 ATTRGGG DREME-6 ATTGGGG 2.2e-047 2.9e-050 -114.07 0.0 96 494 116 150 0.19433 1.2e-052 246 2 CAARACY DREME-7 CAARACY 3.2e-008 4.3e-011 -23.88 0.0 104 494 124 317 0.21053 1.7e-013 246 2 AGCTGGR DREME-8 AGCTGGR 9.2e-007 1.2e-009 -20.52 0.0 370 494 330 370 0.74899 5.0e-012 246 2 CAGCAYAC DREME-9 CAGCAYAC 2.2e-012 3.0e-015 -33.45 0.0 63 493 41 76 0.12779 1.2e-017 246 2 CCTGGGC DREME-10 CCTGGGC 2.3e0000 3.0e-003 -5.80 0.0 132 494 160 444 0.26721 1.2e-005 246 2 GGYACA DREME-11 GGTACA 1.4e-004 1.8e-007 -15.52 0.0 155 495 134 273 0.31313 7.4e-010 247 2 AGCYTC DREME-12 AGCTTC 8.2e-008 1.1e-010 -22.94 0.0 317 495 338 422 0.64040 4.4e-013 247 2 GATAAAGA DREME-13 GATAAAGA 5.2e-007 7.0e-010 -21.08 0.0 57 493 63 216 0.11562 2.8e-012 246 2 TAGYACA DREME-14 TAGYACA 1.1e-009 1.4e-012 -27.28 0.0 148 494 70 105 0.29960 5.8e-015 246 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 7.2e-027 9.6e-030 -66.82 0.0 60 490 176 565 0.12245 3.9e-032 244 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 7.4e-004 9.9e-007 -13.83 0.0 90 492 154 540 0.18293 4.0e-009 245 3 M0395_1.02 (ZNF187)_(Mus_musculus)_(DBD_0.88) GTACTAAT 8.3e-002 1.1e-004 -9.11 0.0 173 493 239 524 0.35091 4.5e-007 246 3 M0398_1.02 (ZSCAN10)_(Mus_musculus)_(DBD_0.82) NGDRAGTGCNN 1.2e-009 1.5e-012 -27.20 0.0 168 490 271 535 0.34286 6.3e-015 244 3 M0404_1.02 (ZNF202)_(Mus_musculus)_(DBD_0.87) NNNKGGGGBV 2.9e-003 3.8e-006 -12.47 0.0 35 491 81 590 0.07128 1.6e-008 245 3 M0424_1.02 (SNAI3)_(Mus_musculus)_(DBD_0.75) NNTGACAKNN 1.3e-003 1.7e-006 -13.28 0.0 143 491 238 592 0.29124 7.0e-009 245 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 3.1e-022 4.1e-025 -56.15 0.0 63 491 177 593 0.12831 1.7e-027 245 3 M0442_1.02 (ZBTB3)_(Mus_musculus)_(DBD_1.00) NNTGCAGYG 2.7e-017 3.6e-020 -44.78 0.0 192 492 352 598 0.39024 1.5e-022 245 3 M0594_1.02 (LIN54)_(Gallus_gallus)_(DBD_0.98) DTTTRAATH 9.1e0000 1.2e-002 -4.41 0.0 412 492 497 554 0.83740 5.0e-005 245 3 M0633_1.02 DMRT2 KAATKTATWN 6.8e-058 9.1e-061 -138.25 0.0 57 491 224 577 0.11609 3.7e-063 245 3 M0719_1.02 FOXG1 RTAAACAW 1.8e-009 2.5e-012 -26.73 0.0 41 493 106 577 0.08316 1.0e-014 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 5.5e-017 7.3e-020 -44.06 0.0 43 489 129 589 0.08793 3.0e-022 244 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 1.3e-111 1.7e-114 -261.94 0.0 49 491 278 591 0.09980 7.1e-117 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 8.4e-058 1.1e-060 -138.04 0.0 63 491 240 595 0.12831 4.6e-063 245 3 M0891_1.02 TLX2 NTAAWNNNNN 3.4e-004 4.5e-007 -14.62 0.0 93 491 23 35 0.18941 1.8e-009 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 8.4e-004 1.1e-006 -13.71 0.0 117 491 161 448 0.23829 4.5e-009 245 3 M1359_1.02 (MYPOP)_(Mus_musculus)_(DBD_0.97) NWTTGCGCCR 3.2e-003 4.3e-006 -12.36 0.0 213 491 260 461 0.43381 1.7e-008 245 3 M1528_1.02 (RFX6)_(Mus_musculus)_(DBD_0.66) NCNTRGYWAC 5.3e-004 7.0e-007 -14.17 0.0 131 491 224 593 0.26680 2.9e-009 245 3 M1582_1.02 (HMG20B)_(Mus_musculus)_(DBD_0.94) NWAWATAATWN 3.9e-026 5.2e-029 -65.12 0.0 44 490 147 573 0.08980 2.1e-031 244 3 M1589_1.02 (SOX30)_(Mus_musculus)_(DBD_1.00) NNDNRACAAT 1.3e-001 1.8e-004 -8.63 0.0 273 491 389 594 0.55601 7.3e-007 245 3 M1668_1.02 PRKRIR NYCVNVSKRNNN 7.2e-020 9.6e-023 -50.70 0.0 139 489 284 583 0.28425 3.9e-025 244 3 M1915_1.02 (ZNF76)_(Xenopus_laevis)_(DBD_0.84) KCRWKGMATBMTGGGARDTV 8.8e-001 1.2e-003 -6.74 0.0 129 481 192 538 0.26819 4.9e-006 240 3 M2273_1.02 E2F6 RGGCGGGARRV 2.7e-003 3.6e-006 -12.54 0.0 284 490 376 540 0.57959 1.5e-008 244 3 M2278_1.02 FOS DVTGASTCATB 3.1e-001 4.1e-004 -7.80 0.0 298 490 337 474 0.60816 1.7e-006 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 6.0e-037 8.0e-040 -90.02 0.0 62 486 205 592 0.12757 3.3e-042 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 2.3e0000 3.1e-003 -5.78 0.0 54 488 84 476 0.11066 1.3e-005 243 3 M2292_1.02 JUND DRTGASTCATS 2.8e0000 3.7e-003 -5.60 0.0 298 490 334 477 0.60816 1.5e-005 244 3 M2299_1.02 (MYF5)_(Mus_musculus)_(DBD_0.90) NRNRRCAGCTGSN 6.5e-001 8.7e-004 -7.05 0.0 376 488 479 565 0.77049 3.6e-006 243 3 M2385_1.02 FOXP2 RWGTAAACAVR 5.9e-025 7.9e-028 -62.41 0.0 48 490 153 577 0.09796 3.2e-030 244 3 M4467_1.02 MEF2C DDKCYAAAAATAGMH 5.0e-004 6.7e-007 -14.21 0.0 80 486 153 587 0.16461 2.8e-009 242 3 M4479_1.02 TCF12 VSAGCAGSTGB 9.2e-001 1.2e-003 -6.71 0.0 388 490 496 574 0.79184 5.0e-006 244 3 M4509_1.02 POU5F1 ATYTGCATRACAAWGRV 3.0e-004 4.0e-007 -14.73 0.0 80 484 139 514 0.16529 1.7e-009 241 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 6.9e-005 9.2e-008 -16.21 0.0 306 486 384 506 0.62963 3.8e-010 242 3 M4537_1.02 E2F4 GGCGGGAARWTBVRR 1.3e0000 1.8e-003 -6.33 0.0 326 486 396 522 0.67078 7.4e-006 242 3 M4551_1.02 ZNF274 YTCAYACTGGAGAGAAA 9.1e-015 1.2e-017 -38.95 0.0 144 484 166 302 0.29752 5.0e-020 241 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 6.0e-002 8.0e-005 -9.43 0.0 305 487 352 479 0.62628 3.3e-007 243 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 3.1e-022 4.1e-025 -56.15 0.0 68 486 187 594 0.13992 1.7e-027 242 3 M4572_1.02 MAFF TGCTGACTCAGCAWW 3.6e-001 4.7e-004 -7.65 0.0 308 486 335 454 0.63374 2.0e-006 242 3 M4604_1.02 ZNF263 RRGGAGGASGVVGRGGRGGRG 5.8e0000 7.7e-003 -4.87 0.0 296 480 374 534 0.61667 3.2e-005 239 3 M4619_1.02 FOSL1 BGGTGASTCAT 3.5e0000 4.6e-003 -5.37 0.0 312 490 334 459 0.63673 1.9e-005 244 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 6.3e0000 8.4e-003 -4.78 0.0 274 484 283 427 0.56612 3.5e-005 241 3 M4681_1.02 BACH2 TGCTGAGTCA 4.6e-002 6.1e-005 -9.71 0.0 301 491 328 451 0.61303 2.5e-007 245 3 M4698_1.02 HNF4A BTGRMCTTTGVHCYB 1.1e-006 1.4e-009 -20.37 0.0 146 486 249 572 0.30041 5.9e-012 242 3 M5287_1.02 ALX4 HTAATYNAATTAN 4.5e-100 6.0e-103 -235.37 0.0 42 488 240 556 0.08607 2.5e-105 243 3 M5291_1.02 ARX YTAATTNRATTAN 8.3e-132 1.1e-134 -308.44 0.0 48 488 279 525 0.09836 4.6e-137 243 3 M5294_1.02 BARHL2 NHTAAAYGNT 6.9e0000 9.2e-003 -4.69 0.0 105 491 149 516 0.21385 3.8e-005 245 3 M5320_1.02 CENPB CCCGCDTNNWRCGAA 6.0e0000 8.0e-003 -4.83 0.0 438 486 377 394 0.90123 3.3e-005 242 3 M5322_1.02 CPEB1 TTTTTATT 9.8e-011 1.3e-013 -29.66 0.0 65 493 152 593 0.13185 5.3e-016 246 3 M5335_1.02 CUX2 ATCGATAHNWTTATYGAT 1.0e-180 1.3e-183 -421.08 0.0 49 483 275 374 0.10145 5.6e-186 241 3 M5348_1.02 DRGX NTAATYHAATTAN 1.7e-068 2.2e-071 -162.68 0.0 44 488 204 538 0.09016 9.2e-074 243 3 M5425_1.02 ETV6 CCGGAASCGGAAGTR 5.1e-001 6.8e-004 -7.30 0.0 300 486 250 340 0.61728 2.8e-006 242 3 M5435_1.02 FOXB1 TCGCYGTGTCATTC 1.3e-006 1.7e-009 -20.20 0.0 145 487 200 442 0.29774 6.9e-012 243 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 8.0e-003 1.1e-005 -11.46 0.0 59 487 110 542 0.12115 4.4e-008 243 3 M5446_1.02 FOXD4L2 RTAAACA 6.5e-051 8.7e-054 -122.18 0.0 50 494 202 593 0.10121 3.5e-056 246 3 M5460_1.02 FOXL1 RTAAACA 1.1e-076 1.5e-079 -181.50 0.0 48 494 234 594 0.09717 6.1e-082 246 3 M5544_1.02 HOXC10 DTTTWATKDB 1.6e-011 2.1e-014 -31.51 0.0 77 491 172 588 0.15682 8.4e-017 245 3 M5563_1.02 HOXD8 VHWAATTADV 6.5e-001 8.6e-004 -7.06 0.0 415 491 538 592 0.84521 3.5e-006 245 3 M5584_1.02 ISX YTAATCTAATTAR 2.1e-110 2.8e-113 -259.17 0.0 48 488 248 487 0.09836 1.1e-115 243 3 M5604_1.02 LMX1A YTAATTAA 1.9e0000 2.5e-003 -6.01 0.0 93 493 129 479 0.18864 1.0e-005 246 3 M5605_1.02 LMX1B TTAATTRN 1.2e-002 1.6e-005 -11.07 0.0 59 493 113 574 0.11968 6.3e-008 246 3 M5621_1.02 MEIS3 SCTGTCAH 4.6e-003 6.1e-006 -12.01 0.0 113 493 194 591 0.22921 2.5e-008 246 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 1.3e-004 1.7e-007 -15.59 0.0 71 483 112 428 0.14700 7.0e-010 241 3 M5697_1.02 ONECUT3 DTTATYGATTTTTY 1.6e-119 2.1e-122 -280.16 0.0 63 487 299 526 0.12936 8.8e-125 243 3 M5711_1.02 PAX9 KKCASTCAWGCGTGACS 6.5e-002 8.7e-005 -9.35 0.0 212 484 142 237 0.43802 3.6e-007 241 3 M5714_1.02 PHOX2A TAATYYAATTA 3.8e-053 5.0e-056 -127.33 0.0 52 490 202 552 0.10612 2.1e-058 244 3 M5715_1.02 PHOX2B TAATYYAATTA 1.1e-044 1.4e-047 -107.88 0.0 54 490 194 555 0.11020 5.8e-050 244 3 M5735_1.02 POU3F3 WAATTWGCATAWW 5.1e0000 6.8e-003 -4.99 0.0 146 488 197 514 0.29918 2.8e-005 243 3 M5740_1.02 POU4F1 ATGMATAATTAATG 5.9e-112 7.9e-115 -262.73 0.0 45 487 258 544 0.09240 3.3e-117 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 2.2e-096 3.0e-099 -226.86 0.0 43 485 235 537 0.08866 1.2e-101 242 3 M5753_1.02 PROX1 YAAGACGYCTTA 7.4e-012 9.9e-015 -32.25 0.0 99 489 123 294 0.20245 4.0e-017 244 3 M5815_1.02 SOX14 ACAATAMCATTG 1.0e-003 1.4e-006 -13.51 0.0 153 489 141 298 0.31288 5.6e-009 244 3 M5825_1.02 SOX21 AACAMTRMMATTGTT 1.9e0000 2.5e-003 -5.98 0.0 174 486 93 181 0.35802 1.0e-005 242 3 M5889_1.02 TBX21 GGTGTGAHWTCACACC 4.3e-001 5.8e-004 -7.46 0.0 373 485 251 286 0.76907 2.4e-006 242 3 M5941_1.02 UNCX NTAATYBAATTAN 1.2e-013 1.5e-016 -36.40 0.0 44 488 121 571 0.09016 6.4e-019 243 3 M5949_1.02 VSX1 YTAATTAN 9.2e-001 1.2e-003 -6.71 0.0 415 493 503 554 0.84178 5.0e-006 246 3 M5970_1.02 ZNF282 NTCGTGTTRKGGGAAAG 3.7e0000 5.0e-003 -5.30 0.0 24 484 29 249 0.04959 2.1e-005 241 3 M5972_1.02 ZNF410 GANTATTATGGGATGKM 2.7e0000 3.6e-003 -5.63 0.0 74 484 49 176 0.15289 1.5e-005 241 3 M5974_1.02 ZNF524 GGGTTCRAGGGT 8.9e-002 1.2e-004 -9.04 0.0 263 489 295 452 0.53783 4.8e-007 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 5.2e-080 7.0e-083 -189.17 0.0 65 491 276 596 0.13238 2.8e-085 245 3 M6123_1.02 (ZNF281)_(Mus_musculus)_(DBD_1.00) GRGKTGGGGGAGGGG 6.0e-002 8.0e-005 -9.43 0.0 336 486 423 536 0.69136 3.3e-007 242 3 M6141_1.02 ALX1 TAATBYAATTAY 7.6e-012 1.0e-014 -32.22 0.0 49 489 126 572 0.10020 4.1e-017 244 3 M6146_1.02 TFAP2D ACGNGCCBCRGGCK 5.6e-001 7.5e-004 -7.20 0.0 299 487 287 396 0.61396 3.1e-006 243 3 M6147_1.02 ARID3A TWWAWTTTGATWYYVWTTAATH 3.5e-111 4.6e-114 -260.96 0.0 49 479 272 559 0.10230 1.9e-116 239 3 M6149_1.02 ARID5B DBYKDGTATTSKR 3.2e0000 4.2e-003 -5.47 0.0 428 488 552 593 0.87705 1.7e-005 243 3 M6186_1.02 DBP KVTTRCATAAB 4.1e-002 5.5e-005 -9.81 0.0 44 490 88 560 0.08980 2.2e-007 244 3 M6187_1.02 DDIT3 GGGGATTGCABBB 1.0e-007 1.4e-010 -22.72 0.0 310 488 445 575 0.63525 5.6e-013 243 3 M6191_1.02 E2F2 GGCGCGAAAC 9.3e-005 1.2e-007 -15.90 0.0 103 491 146 434 0.20978 5.1e-010 245 3 M6205_1.02 ELF3 GGSAAACAGGAARY 2.3e0000 3.0e-003 -5.80 0.0 231 487 317 562 0.47433 1.2e-005 243 3 M6221_1.02 ETS2 VMVGGAAGTKS 1.6e-007 2.1e-010 -22.29 0.0 258 490 398 593 0.52653 8.5e-013 244 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 2.7e-088 3.6e-091 -208.24 0.0 64 488 284 592 0.13115 1.5e-093 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 7.9e-036 1.0e-038 -87.45 0.0 56 486 183 550 0.11523 4.3e-041 242 3 M6236_1.02 FOXC2 YCTRDSWAAACAAAC 3.0e-004 4.0e-007 -14.73 0.0 400 486 499 546 0.82305 1.7e-009 242 3 M6237_1.02 FOXD3 AAACAAACA 3.6e-066 4.9e-069 -157.30 0.0 40 492 202 591 0.08130 2.0e-071 245 3 M6238_1.02 FOXF1 WAAATAAACAW 2.4e-101 3.2e-104 -238.31 0.0 64 490 297 583 0.13061 1.3e-106 244 3 M6239_1.02 FOXF2 HWADGTAAACA 4.0e-088 5.4e-091 -207.85 0.0 72 490 299 590 0.14694 2.2e-093 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 9.1e-132 1.2e-134 -308.35 0.0 39 491 273 589 0.07943 5.0e-137 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 4.5e-034 5.9e-037 -83.41 0.0 48 488 169 572 0.09836 2.4e-039 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 9.8e-034 1.3e-036 -82.63 0.0 56 488 188 598 0.11475 5.4e-039 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 3.9e-045 5.2e-048 -108.88 0.0 49 485 193 592 0.10103 2.1e-050 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 2.3e-038 3.1e-041 -93.28 0.0 50 488 184 593 0.10246 1.3e-043 243 3 M6247_1.02 FOXO4 MRTAAACAA 4.4e-013 5.9e-016 -35.07 0.0 44 492 122 590 0.08943 2.4e-018 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 8.9e-060 1.2e-062 -142.59 0.0 53 489 216 561 0.10838 4.9e-065 244 3 M6269_1.02 HBP1 AYYCATTGA 4.6e-001 6.1e-004 -7.41 0.0 268 492 350 545 0.54472 2.5e-006 245 3 M6276_1.02 HINFP DMSHHMGCGGACGTTV 4.1e0000 5.5e-003 -5.20 0.0 221 485 195 344 0.45567 2.3e-005 242 3 M6279_1.02 HMGA1 AAAATWN 2.8e0000 3.8e-003 -5.57 0.0 412 494 527 589 0.83401 1.5e-005 246 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 2.7e-095 3.5e-098 -224.39 0.0 89 487 333 571 0.18275 1.5e-100 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 9.2e-011 1.2e-013 -29.73 0.0 49 489 122 568 0.10020 5.0e-016 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 8.4e0000 1.1e-002 -4.50 0.0 346 490 447 573 0.70612 4.6e-005 244 3 M6297_1.02 HOXB7 MATYAATCAA 1.0e-089 1.4e-092 -211.53 0.0 43 491 221 513 0.08758 5.5e-095 245 3 M6298_1.02 HOXB8 BMATTAATCAA 2.8e-064 3.7e-067 -152.95 0.0 52 490 208 511 0.10612 1.5e-069 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 2.2e-151 2.9e-154 -353.52 0.0 48 486 271 436 0.09877 1.2e-156 242 3 M6301_1.02 HOXD10 AATTAAARCA 2.5e-013 3.4e-016 -35.63 0.0 95 491 202 579 0.19348 1.4e-018 245 3 M6328_1.02 LHX2 YRSDTTYAATWAG 2.1e-001 2.8e-004 -8.19 0.0 224 488 293 520 0.45902 1.1e-006 243 3 M6329_1.02 LHX3 AAAATTAATTARY 6.8e-062 9.1e-065 -147.46 0.0 60 488 218 503 0.12295 3.7e-067 243 3 M6330_1.02 MAFA BTGCTGACBMYGCARYHTYCV 4.4e-004 5.9e-007 -14.35 0.0 298 480 415 562 0.62083 2.5e-009 239 3 M6347_1.02 MSX2 TAATTNK 3.7e-001 5.0e-004 -7.61 0.0 384 494 498 583 0.77733 2.0e-006 246 3 M6348_1.02 MTF1 MGKGCCGTGTGCAAADS 6.9e-014 9.3e-017 -36.92 0.0 182 484 267 458 0.37603 3.8e-019 241 3 M6356_1.02 MZF1 RGDGGGGAW 3.1e-002 4.1e-005 -10.10 0.0 36 492 79 583 0.07317 1.7e-007 245 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 1.5e-001 2.0e-004 -8.52 0.0 121 487 136 377 0.24846 8.2e-007 243 3 M6374_1.02 NKX2-1 STCAAGKGCH 2.2e-002 2.9e-005 -10.45 0.0 141 491 230 594 0.28717 1.2e-007 245 3 M6378_1.02 NKX3-1 WWTAAGTATWTWW 7.8e-126 1.0e-128 -294.70 0.0 44 488 278 578 0.09016 4.3e-131 243 3 M6381_1.02 NR0B1 YSTCCCMCKC 4.8e-002 6.4e-005 -9.65 0.0 237 491 342 582 0.48269 2.6e-007 245 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 7.7e-127 1.0e-129 -297.01 0.0 52 480 285 524 0.10833 4.3e-132 239 3 M6410_1.02 PAX6 TSAWGCGTRAA 2.5e0000 3.3e-003 -5.70 0.0 356 490 449 558 0.72653 1.4e-005 244 3 M6411_1.02 PAX8 BTVAYTSRMGYRKR 2.4e0000 3.2e-003 -5.74 0.0 363 487 482 588 0.74538 1.3e-005 243 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 2.7e-018 3.5e-021 -47.09 0.0 52 486 148 582 0.10700 1.5e-023 242 3 M6417_1.02 POU1F1 RWATATTCATKAR 1.3e-003 1.8e-006 -13.24 0.0 50 488 106 590 0.10246 7.4e-009 243 3 M6426_1.02 POU3F2 CATRAATWWT 1.1e-089 1.5e-092 -211.42 0.0 49 491 251 585 0.09980 6.2e-095 245 3 M6429_1.02 POU6F1 CATAAWTTATGCR 8.3e0000 1.1e-002 -4.50 0.0 412 488 311 339 0.84426 4.6e-005 243 3 M6432_1.02 PPARD TGACCTTTNNCCTR 1.6e-004 2.1e-007 -15.39 0.0 139 487 232 575 0.28542 8.5e-010 243 3 M6433_1.02 PPARG GKKMMCTTTGACCYASWT 2.9e-014 3.8e-017 -37.80 0.0 145 483 279 584 0.30021 1.6e-019 241 3 M6438_1.02 PROP1 RASHAATTAAHWTVR 2.9e-005 3.9e-008 -17.05 0.0 82 486 156 568 0.16872 1.6e-010 242 3 M6440_1.02 PRRX2 YTAATTR 6.1e-002 8.2e-005 -9.41 0.0 406 494 484 538 0.82186 3.3e-007 246 3 M6442_1.02 PURA CCMBGCCCNCCMMYWCC 1.8e-004 2.5e-007 -15.22 0.0 304 484 426 571 0.62810 1.0e-009 241 3 M6462_1.02 RXRG DTGACCTTTGACC 5.7e0000 7.6e-003 -4.88 0.0 210 488 192 358 0.43033 3.2e-005 243 3 M6472_1.02 SOX15 CWTTGTT 4.1e0000 5.5e-003 -5.21 0.0 174 494 255 587 0.35223 2.2e-005 246 3 M6475_1.02 SOX2 WTTTGCATRACAAWGG 1.3e0000 1.7e-003 -6.37 0.0 275 485 373 568 0.56701 7.1e-006 242 3 M6476_1.02 SOX4 GAGAACAAAGSG 4.8e0000 6.4e-003 -5.05 0.0 163 489 221 527 0.33333 2.6e-005 244 3 M6478_1.02 SOX9 ARAACAATRGR 2.0e0000 2.7e-003 -5.92 0.0 270 490 358 559 0.55102 1.1e-005 244 3 M6510_1.02 TEF TGTTTATRTAAMTK 7.9e-018 1.1e-020 -46.00 0.0 69 487 173 571 0.14168 4.3e-023 243 3 M6546_1.02 ZFHX3 ATTAWTAATTA 8.2e-130 1.1e-132 -303.85 0.0 48 490 276 520 0.09796 4.5e-135 244 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).