Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CTTYAYCC | 8 | CTTCATCC |
AGYTTSCC | 8 | AGCTTCCC |
ACAGCAYA | 8 | ACAGCATA |
CTGTRY | 6 | CTGTGT |
RAGACCCA | 8 | AAGACCCA |
AATGTHAA | 8 | AATGTAAA |
CCAATTAA | 8 | CCAATTAA |
TCTYACA | 7 | TCTTACA |
RGCATTTA | 8 | GGCATTTA |
TRTCAAAA | 8 | TATCAAAA |
CCABTGG | 7 | CCATTGG |
CTCTTGAA | 8 | CTCTTGAA |
ATCTTGCM | 8 | ATCTTGCA |
CCAGGAWA | 8 | CCAGGAAA |
GGTACA | 6 | GGTACA |
ACTATAG | 7 | ACTATAG |
TGCAAARA | 8 | TGCAAAGA |
GGGGAGRC | 8 | GGGGAGGC |
AAGGTTAR | 8 | AAGGTTAG |
CAATRTCA | 8 | CAATATCA |
AAATGKGC | 8 | AAATGGGC |
CTCTGTC | 7 | CTCTGTC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.301 C 0.199 G 0.199 T 0.301
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
TRTCAAAA | DREME-10 | chr20 | + | 646756 | 646763 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr7 | + | 1688982 | 1688989 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr1 | + | 10087409 | 10087416 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr16 | + | 16571102 | 16571109 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr10 | + | 23101941 | 23101948 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr1 | + | 24251699 | 24251706 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr7 | + | 37231589 | 37231596 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr22 | + | 37436421 | 37436428 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr20 | + | 38458536 | 38458543 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr19 | + | 41815508 | 41815515 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr8 | + | 53998378 | 53998385 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr12 | + | 57866526 | 57866533 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr10 | + | 70648849 | 70648856 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr5 | + | 76165261 | 76165268 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr4 | + | 89516812 | 89516819 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr4 | + | 102604427 | 102604434 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr8 | + | 108301172 | 108301179 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr12 | + | 110870025 | 110870032 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr5 | + | 112660332 | 112660339 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr10 | + | 112875211 | 112875218 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr7 | + | 113953596 | 113953603 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr12 | + | 114041687 | 114041694 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr12 | + | 114043070 | 114043077 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr10 | + | 114649395 | 114649402 | 2.94e-05 | 0.317 | tgtcAaaa |
TRTCAAAA | DREME-10 | chrX | + | 123770369 | 123770376 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr9 | + | 132144917 | 132144924 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chrX | + | 150813466 | 150813473 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr6 | + | 151377235 | 151377242 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr3 | + | 189069440 | 189069447 | 2.94e-05 | 0.317 | tgtcaaaa |
TRTCAAAA | DREME-10 | chr1 | - | 14539453 | 14539460 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr16 | - | 15229783 | 15229790 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chrX | - | 15960415 | 15960422 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr8 | - | 18711483 | 18711490 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr14 | - | 21199967 | 21199974 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr1 | - | 29379656 | 29379663 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr6 | - | 36169774 | 36169781 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr19 | - | 46887403 | 46887410 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chrX | - | 47163344 | 47163351 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr18 | - | 55219982 | 55219989 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr2 | - | 68470681 | 68470688 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr4 | - | 75040646 | 75040653 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr14 | - | 77247174 | 77247181 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr17 | - | 78558346 | 78558353 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr6 | - | 81386531 | 81386538 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr14 | - | 92608224 | 92608231 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr15 | - | 101946125 | 101946132 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr10 | - | 103047535 | 103047542 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr12 | - | 106333175 | 106333182 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr12 | - | 107641317 | 107641324 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr12 | - | 123053386 | 123053393 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr5 | - | 142411148 | 142411155 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chrX | - | 150813477 | 150813484 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr1 | - | 204667259 | 204667266 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr2 | - | 234292890 | 234292897 | 2.94e-05 | 0.317 | TGTCAAAA |
TRTCAAAA | DREME-10 | chr11 | + | 1134933 | 1134940 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr12 | + | 2405262 | 2405269 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr19 | + | 12261751 | 12261758 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr16 | + | 19348341 | 19348348 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr10 | + | 21725100 | 21725107 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr22 | + | 27153112 | 27153119 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr22 | + | 29390252 | 29390259 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr17 | + | 30002302 | 30002309 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr6 | + | 32158279 | 32158286 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr4 | + | 39678015 | 39678022 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr7 | + | 46181492 | 46181499 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr13 | + | 46311452 | 46311459 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr17 | + | 47164491 | 47164498 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr1 | + | 47976937 | 47976944 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr10 | + | 52007270 | 52007277 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr17 | + | 58832731 | 58832738 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr3 | + | 61646572 | 61646579 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr17 | + | 66935960 | 66935967 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr11 | + | 73611455 | 73611462 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr18 | + | 74299379 | 74299386 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr14 | + | 76582695 | 76582702 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr14 | + | 77247002 | 77247009 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr1 | + | 82079833 | 82079840 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr7 | + | 98158077 | 98158084 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr5 | + | 103249317 | 103249324 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr11 | + | 119412255 | 119412262 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr12 | + | 120051746 | 120051753 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr8 | + | 130208202 | 130208209 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr3 | + | 130739924 | 130739931 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr3 | + | 161266516 | 161266523 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr1 | + | 207994274 | 207994281 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chr2 | + | 224421384 | 224421391 | 7.38e-05 | 0.401 | tatcaaaa |
TRTCAAAA | DREME-10 | chrUn_KI270466v1 | - | 359 | 366 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr20 | - | 3400397 | 3400404 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr1 | - | 15142292 | 15142299 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr2 | - | 20307451 | 20307458 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr22 | - | 26703465 | 26703472 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr15 | - | 29593975 | 29593982 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr6 | - | 33767099 | 33767106 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr7 | - | 37231770 | 37231777 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr14 | - | 54711481 | 54711488 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr3 | - | 55345667 | 55345674 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr2 | - | 62402320 | 62402327 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr3 | - | 67609885 | 67609892 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr7 | - | 72609028 | 72609035 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr13 | - | 72680539 | 72680546 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr4 | - | 85175306 | 85175313 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr6 | - | 100599549 | 100599556 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr15 | - | 101945903 | 101945910 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr5 | - | 135362082 | 135362089 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr1 | - | 164967345 | 164967352 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr4 | - | 187366244 | 187366251 | 7.38e-05 | 0.401 | TATCAAAA |
TRTCAAAA | DREME-10 | chr1 | - | 213180985 | 213180992 | 7.38e-05 | 0.401 | TATCAAAA |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_28 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif TRTCAAAA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_28 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF529.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.